ID   FR694198; SV 1; linear; genomic RNA; STD; VRL; 1324 BP.
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AC   FR694198;
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DT   23-DEC-2010 (Rel. 107, Created)
DT   23-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Avian orthoreovirus segment S2, strain AVS-B, genomic RNA
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KW   .
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OS   Avian orthoreovirus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus.
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RN   [1]
RP   1-1324
RA   Banyai K.;
RT   ;
RL   Submitted (29-SEP-2010) to the INSDC.
RL   Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research
RL   Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY.
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RN   [2]
RA   Banyai K., Dandar E., Dorsey K.M., Mato T., Palya V.;
RT   "The genomic constellation of a novel avian orthoreovirus strain associated
RT   with runting-stunting syndrome in broilers";
RL   Virus Genes 0:0(2010).
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DR   MD5; 3af4fc2e0756212dea7544f8b3b4e623.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1324
FT                   /organism="Avian orthoreovirus"
FT                   /segment="S2"
FT                   /strain="AVS-B"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:38170"
FT   CDS             16..1266
FT                   /gene="sigma-A"
FT                   /product="sigma-A protein"
FT                   /db_xref="InterPro:IPR004317"
FT                   /db_xref="UniProtKB/TrEMBL:E7AXT7"
FT                   /protein_id="CBX25030.1"
FT                   /translation="MARAVYDFFSTPFGNRGLATNRTQLSSLLTSSNSPWQRFLSSMTP
FT                   LTAPGIVSTPEAPYPGSLMYQESMLHSATVPGVLGNRDAWRTFNVFGLSWTDEGLSGLV
FT                   AAQDPPPAAPYQPASAQWSDLLNYPRWANRRRELQSKYPLLLRSTLLSAMRAGPVLYVE
FT                   TWPNMISGRLADWFMSQYGNNFVDMCARLTQSCLNMPVEPDGNYDQQMRALISLWLLSY
FT                   IGVVNQTNTISGFYFSSKTRGQALDSWTLFYTTNTNRVQITQRHFAYVCARSPDWNVDK
FT                   SWIAAANLTAIIMACRQPPMFANQGVINQAQNRPGFSMNGGTPVHELNLLTTAQECIRQ
FT                   WVVAGLVSAAKGQTLTQEANDFSALIQADLGQIKAQDDALYNQQPGYARRIKPFVNGDW
FT                   TPGMTAQALAVLATFTA"
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SQ   Sequence 1324 BP; 301 A; 365 C; 325 G; 333 T; 0 other;
     gctttttctc ccacgatggc gcgtgccgta tacgacttct tttctacgcc tttcgggaat        60
     cgtggtctag caacgaatcg tactcaacta tcatcactac taacaagctc gaattcccca       120
     tggcaacgat ttctatcttc aatgactcca ttgacggcgc caggtattgt ctcaacacct       180
     gaagcaccct atccgggctc actgatgtat caagagtcca tgcttcacag tgccactgtc       240
     cctggagtac ttggtaatcg tgatgcttgg cgtacgttta atgtcttcgg gctttcatgg       300
     actgacgaag gactgtcagg actggtggct gctcaagatc ctcctcccgc cgccccgtat       360
     cagccagcct ctgctcagtg gtcagatctc ctcaactacc ccagatgggc gaacagacgt       420
     cgtgagttac aatcaaaata cccgcttctg cttcgatcca cgctgctttc tgccatgcga       480
     gctggtcctg ttctttatgt tgagacgtgg ccgaatatga tctcaggacg gctagccgac       540
     tggttcatgt cccaatatgg caacaatttc gttgacatgt gtgccaggtt gacacagtct       600
     tgtttgaaca tgcctgtcga acctgatggg aattacgatc agcagatgcg tgctttgatc       660
     agtttgtggc tcctttcgta cattggggta gtcaatcaga ctaataccat cagcggcttc       720
     tacttctcct cgaagactcg gggtcaagcg ttagacagtt ggaccttatt ttacaccaca       780
     aacaccaatc gtgtccaaat tacccagagg catttcgctt acgtgtgtgc acggtcccct       840
     gattggaacg tggataaatc gtggatcgct gcggcgaatt tgaccgctat catcatggcc       900
     tgtcgtcaac cgccaatgtt tgccaaccaa ggcgttatca accaagcgca gaaccggcct       960
     ggcttttcca tgaatggagg gacgcccgtt cacgagctca acttactgac taccgcgcag      1020
     gaatgcatta ggcagtgggt ggtagctggt ctggtgtcag cggcgaaggg gcaaacatta      1080
     acacaagagg ctaatgactt ttcggccctc atccaggcag atctaggaca aatcaaggcg      1140
     caggatgatg ctctgtacaa tcagcagcca ggatacgcaa ggagaataaa acccttcgtt      1200
     aacggtgact ggacaccagg catgaccgcg caagctctgg ccgttctagc cacttttacc      1260
     gcctaggcgt agggtcgtac gctgcccgag tccagccctc cggcagcacg tgggtgtact      1320
     catc                                                                   1324
//