ID FR694193; SV 1; linear; genomic RNA; STD; VRL; 3907 BP. XX AC FR694193; XX DT 23-DEC-2010 (Rel. 107, Created) DT 23-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Avian orthoreovirus segment L3, strain AVS-B, genomic RNA XX KW . XX OS Avian orthoreovirus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus. XX RN [1] RP 1-3907 RA Banyai K.; RT ; RL Submitted (29-SEP-2010) to the INSDC. RL Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research RL Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY. XX RN [2] RA Banyai K., Dandar E., Dorsey K.M., Mato T., Palya V.; RT "The genomic constellation of a novel avian orthoreovirus strain associated RT with runting-stunting syndrome in broilers"; RL Virus Genes 0:0(2010). XX DR MD5; de696b42d7ffc8f566511db5ab832856. XX FH Key Location/Qualifiers FH FT source 1..3907 FT /organism="Avian orthoreovirus" FT /segment="L3" FT /strain="AVS-B" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:38170" FT CDS 13..3870 FT /gene="lambda-C" FT /product="lambda-C protein" FT /db_xref="GOA:E7AXT2" FT /db_xref="InterPro:IPR010311" FT /db_xref="UniProtKB/TrEMBL:E7AXT2" FT /protein_id="CBX25025.1" FT /translation="MAQIRGLRLSTTLSAPPSRKTLTSHTYDELISALKLTTKPWRPLK FT SRDRNSITAVQLLFPLNGYIEPMFILEKDMSYEDFESWLSPLLSALADQLLRRYPIASH FT HGRLVNPLLSNAIVAAFLSNVPYLHALDHLFIIRGVVEDILDVGLSIQNHLWYDRSALV FT TPAGQKFIQLSGYHFSSQDPCLFSKQLRCYGLVYYFLDMSDCISYCQRHLSNSTPLIHF FT DRPSNGVHCLVPSESTTPIAGSLPVSALSSILLESCIQQSLLNTRTPTGSPVVRQVEVL FT LPISSPFFERQNTLEYSLFALSNALVNGYQLIDLQPNHPDCATVAAILARLIDFSKDIT FT TIRPSPAQFNIYADSPLTYSGENANFIRRLPCSSGNPIGPVVVGKTVDRAIGWMPQFDP FT ASSYNPDLAMDSLSKATTLPLRAKFSPFWSGPALFSFASCDRKNGIYDVSFMSQFPSLY FT FSDDDTASRSRFSSYRAVKDRSLLKDTANLLYISNLASSHDHRLIPDSKTMVYVGASGT FT HADNQPSVIKPLLNGSLPGVFKPLSVKQIGWEVTNGTICDIELPLATGTFFFVYSDVDQ FT VQAGDSDLDASSRRFCSQLDMLVKLTYTGGSVVAKCNFPTNLVWRHLFTTVSPYFSSIH FT LLKPLIANNLELYVLLAEKLPVPEASFLPSADMVVFWRSQIQRYRTLRDSFAVVPSIDS FT TLSLEDDLTVSVLNFVDVTSLSSVEDQHALAAFSVITSLGSQKLSIHPYFDSYRTQLIG FT IITPHSRNVLDRLAYIPRVFPSTIDVQHRIMSSSDPEIFGFRSTYWTQLSFFYDNALMQ FT MDFTEAKHWLDLGTGPEARPLSFLPSDLPVTLCDTRPFIFPSGCWATFTDFLSYDYLTT FT NVILSTGADVVSCVLTLGAACADANITLHEGVRQIVSQCVDANVKTLFLQLNCPLPSAG FT DVPRDVLELVQTNSTYIFHSLGRIEPFIPYSALLEIVEDLCPGIVVEIKTMDPSLSWLN FT YAVHFNASVSSDDIVLAMRLSHFCPLFVFHLNRHSADFPDDARVGSPFTVLLSNYEDTS FT SYEVTLDNVTIATITAGSLVGFSSGVQVASKDDQLTLTINSASPGILSIIQVLPVRVSL FT GSCVIEAPDPSLSLIFPAKLDTSLSGTDLELFLSDWYDVALFYIDEANSRLLPVSDTKY FT EIYRKDQTPGTRTINYIFDRSDVFFKIVLCDVSPSGVGRFIYRELPELSSPVWPEDVRT FT FLSLPFDSPMVIISPDGPVNYDGATVTPPTSWLTVDGSTCVVDGRPSFFVPPGRYGLVR FT V" XX SQ Sequence 3907 BP; 822 A; 1000 C; 813 G; 1272 T; 0 other; gcttttccac ccatggctca gattagaggc cttcggttgt caacgacgct ctcagctcct 60 ccttcacgaa agactttgac ttcacataca tacgatgagc taatatctgc gttgaagcta 120 actaccaaac catggcgacc acttaagtct agggatcgga attccatcac cgcggtgcaa 180 ctattattcc ccctcaatgg atatatcgaa ccaatgttca tactggagaa agacatgagc 240 tatgaggatt ttgagtcttg gttatcacct ctactttcag ctttggcgga tcaattgtta 300 cggcgttacc ccattgcgtc tcaccatggg cgactggtta atccattgct ttccaatgcc 360 atcgtcgcgg cctttctatc aaatgttcct tacttgcatg cgctggatca tctttttata 420 atccgcggcg ttgttgaaga cattctggat gtcggacttt ccattcagaa tcatctgtgg 480 tatgatcgta gtgcccttgt gacgccagct ggtcagaagt tcatccaact atctggttat 540 catttctcct ctcaagatcc ttgtttgttt tcaaagcaac tgcgttgcta tgggctcgtc 600 tattattttc tagacatgtc ggactgcatt tcatattgtc agcgacatct ctccaattct 660 actcctctta ttcatttcga tcgcccatct aatggagtac attgcttggt cccttccgaa 720 tcaacaactc caattgctgg ctccctacct gtgtcagcac tcagttctat cttgcttgag 780 tcttgtattc aacaatctct tctgaatact cgaactccta ccgggagtcc ggttgtgagg 840 caagttgagg tgttactacc tatttcgtcc cctttcttcg agcgtcaaaa tactttggaa 900 tactccttat ttgcgctctc taacgcgctg gttaatggct accagctaat agacttacaa 960 ccgaatcacc cggattgcgc gactgtagcc gctattttag ccaggctgat tgatttttcg 1020 aaggacatta ctaccattcg cccatctccc gcgcaattta atatttatgc tgacagtcca 1080 ctgacttata gtggtgagaa cgctaacttt atccggcgct taccctgctc ttctgggaac 1140 cctattggtc cagtcgtcgt cggcaaaact gttgaccgcg ctatcggttg gatgcctcaa 1200 tttgatcccg cctcttctta caatcctgat ttggctatgg actccttatc taaagccacg 1260 acgctaccgc ttcgcgcaaa attttcgccc ttctggtctg gtccagcttt attctctttc 1320 gcttcttgcg atcggaagaa tggaatttac gatgtctctt tcatgtccca atttccatct 1380 ttgtatttca gtgatgatga cacagcctct agatcccggt tctcttccta tcgcgccgtc 1440 aaagacagat ctttgctgaa ggacacagct aacttactgt atatctcgaa cttggccagt 1500 tcgcacgatc accgccttat tccagactcg aagaccatgg tgtacgttgg ggcttcaggt 1560 acgcacgcgg ataatcagcc atctgtcatc aagcctttac taaatgggtc acttccgggc 1620 gtctttaaac ctctctctgt gaagcagatt ggatgggagg tgactaatgg tactatttgc 1680 gacattgagt taccactcgc gacaggcaca tttttcttcg tctacagcga tgtcgatcaa 1740 gttcaggctg gtgactccga tcttgatgcc tcttcccgcc gcttctgctc ccaattggac 1800 atgcttgtca aattgacata cacaggtgga tccgtcgttg ctaaatgtaa cttcccaact 1860 aatctcgttt ggcggcacct ctttacgacc gtttctccat acttttcttc tattcatctg 1920 ctgaaaccac taatcgctaa taatttggag ttgtatgttc tattggctga gaagttgcca 1980 gttcctgaag cgtccttcct cccttctgca gatatggtcg tcttctggag atcacagatt 2040 caacgttatc gaactttacg tgattctttt gctgtagttc cctcgattga ctctactctt 2100 agcttggaag atgatttaac tgtttctgtt ctgaattttg ttgatgtgac ttctctctca 2160 tctgtggaag atcaacatgc cctggctgcc ttttcagtaa ttacttcatt agggtctcag 2220 aaactgtcga ttcaccccta ttttgatagt taccgtactc agctgatcgg gataatcact 2280 ccccactctc gtaacgtatt ggataggctg gcgtacatac cgcgtgtgtt tccctctacc 2340 attgatgttc agcatcgcat catgtcgtca tctgaccctg agatcttcgg tttccgctct 2400 acctattgga ctcagctctc attcttttat gacaatgcat tgatgcagat ggatttcact 2460 gaagcgaaac attggcttga cttagggaca ggacctgaag ctaggccttt atctttcttg 2520 ccctccgatc ttcccgtcac cctgtgtgat actcgacctt tcatatttcc ttctggttgc 2580 tgggccacgt tcacagattt tcttagttac gattacctaa ccacaaatgt tattctctcg 2640 accggagctg atgttgtatc ttgcgttctc actttaggtg ctgcttgtgc cgacgcgaac 2700 ataacgcttc atgagggagt tcgccagata gtttcacaat gtgtggatgc caatgttaag 2760 acgctcttct tacagctcaa ttgtcctttg ccttctgccg gtgatgtgcc ccgtgacgtt 2820 ttggaactgg tgcagactaa ctcgacttac attttccatt cgttgggccg cattgaacct 2880 tttattcctt actctgctct tcttgagatc gtggaggact tatgcccggg tatcgttgtg 2940 gagattaaga cgatggatcc atctctttcg tggctcaatt acgctgtaca ttttaatgca 3000 tctgtttctt ccgatgatat agtgttggct atgcggttgt ctcacttctg tcccctattc 3060 gtgtttcact tgaaccgtca ttcagctgat tttccagacg atgcgcgcgt aggctctcct 3120 tttacggttt tactgtccaa ttatgaggac acgagctctt atgaggttac tttagataac 3180 gtcacgattg ctacaatcac tgctggatct cttgtgggct tttcatcggg tgtccaggtc 3240 gcttcaaaag atgatcaact cactttaacc ataaactctg ccagtcctgg aattttgtct 3300 attattcagg tgctcccggt gcgtgtctct cttggcagct gtgtgataga ggccccagac 3360 ccttcactgt ccttgatttt cccggccaaa ctggacacat ctctatcggg cacagatctg 3420 gaattgttct tatctgattg gtatgatgtc gctttattct atattgatga agccaactct 3480 cgtttgttgc cggtgtcgga taccaagtac gaaatttaca gaaaagatca aactccaggt 3540 actaggacga ttaattatat cttcgatcgc tcagatgtct tcttcaaaat agtgttgtgt 3600 gacgtttctc catcaggagt tggccgattc atttatcgcg agctacccga gttaagttca 3660 cccgtgtggc ctgaagacgt tcgcaccttt ctatcgctac ctttcgactc tccaatggtc 3720 attatctctc ctgatggtcc tgtgaactac gatggtgcga ctgtgacgcc ccccacgtct 3780 tggttgacag ttgacggtag tacatgcgtt gtcgatggtc ggccttcatt ctttgtgcct 3840 cccggtagat atggcctggt gagagtctag acgaccgcgg gcctccagta gaagggtgtt 3900 actcatc 3907 //