ID FR694191; SV 1; linear; genomic RNA; STD; VRL; 3958 BP. XX AC FR694191; XX DT 23-DEC-2010 (Rel. 107, Created) DT 23-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Avian orthoreovirus segment L1, strain AVS-B, genomic RNA XX KW . XX OS Avian orthoreovirus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus. XX RN [1] RP 1-3958 RA Banyai K.; RT ; RL Submitted (29-SEP-2010) to the INSDC. RL Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research RL Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY. XX RN [2] RA Banyai K., Dandar E., Dorsey K.M., Mato T., Palya V.; RT "The genomic constellation of a novel avian orthoreovirus strain associated RT with runting-stunting syndrome in broilers"; RL Virus Genes 0:0(2010). XX DR MD5; 4466248c41736e1bdbd27b674dedee96. XX FH Key Location/Qualifiers FH FT source 1..3958 FT /organism="Avian orthoreovirus" FT /segment="L1" FT /strain="AVS-B" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:38170" FT CDS 21..3902 FT /gene="lambda-A" FT /product="lambda-A protein" FT /db_xref="GOA:E7AXT0" FT /db_xref="InterPro:IPR013087" FT /db_xref="UniProtKB/TrEMBL:E7AXT0" FT /protein_id="CBX25023.1" FT /translation="MSSRKVARRRHKDATESKDTKNTTKSKPSSTDVKESVENATDKKV FT TVPTPDNPAASTPSSTDGASQTSVAKQTNDNDNSVKESAPKPTVSSDGKDGMHGAVKSQ FT DAKATVAVDNNKDRDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKAMME FT QKQLVAGLPKQPKSANHLCTVCMAQFASSDALAIHQTTHSIGSNAALTSFSISTAVEEF FT IQSWATATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNTVQDVI FT SYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESNARSFSM FT LLNTGATPEGTFNPNTLRMNVLQMCLQYVLSNLHLNRSTQFTMDLTAAAPNLSASQLRI FT VPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAPSEWADMWE FT TADSLTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVARLLPWRVSS FT DERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAMSTIVESTTNT FT QSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGGSVTSIDTLVDM FT FVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAAAFNNPTTWPQCF FT LHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFTPPDVLLLPLQHRP FT IRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRASMRNAMTNFRIIKSY FT TPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVSRQAPNNLAQPALNMS FT MTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLTPLYSNDGLFNNVQHAM FT VASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATIFGRSINSLFQTAFDLSP FT STVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMISEATLLVERTLSHEYNLF FT GLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDVDVHEFGSRSFANFGMNGEEILVMDA FT NGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLYIRLEVGAYPYTVQYYQGREF FT TDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGMVTHYIWSTEYNDGSLFATNTD FT LPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTIDLYCSLRRYYLETPPITATVTTY FT GDGLPALNH" XX SQ Sequence 3958 BP; 895 A; 1065 C; 877 G; 1121 T; 0 other; gcttttctcc gaacgccgaa atgagttcgc gcaaagtggc tagacgtcgt cataaggatg 60 ctactgaatc taaagacact aagaacacta ctaagtctaa gccatcttcc actgacgtta 120 aagaatccgt agaaaacgcc acagacaaga aagtcaccgt cccaacgcca gataatccag 180 ctgcctctac tccctcctct actgatgggg cttcacaaac ctcagtcgct aagcagacga 240 atgataatga taactcggtt aaggaatcag ctcccaaacc tactgtatct agtgatggga 300 aagatggaat gcacggtgcg gtgaaatcgc aagacgctaa agcgaccgta gctgtagata 360 ataataagga tagagacgta gtatttggtg gtgcgggttc tggtgataag aatgctatta 420 cgaagactgg gtctgttgac aatgatgggg gtgttaaggt tgttccagct aaagacgcta 480 cgatatcttc agctaaagct atgatggagc aaaagcagct tgtagctggc cttccgaagc 540 aaccgaaatc cgctaatcat ttgtgtactg tctgcatggc ccagttcgcg tcatctgacg 600 ctcttgctat tcaccagact acgcattcta ttggttctaa tgctgctctg acaagctttt 660 cgatttctac tgctgttgaa gaattcattc agtcatgggc taccgccacg tctacagcca 720 acactaagac ggctttgact gtgtctgacg ttgactcact gatgatgact gaaggaatac 780 gcctcataac ttgggattcc gggttatgta catctttcga acttgtcccg attgtccatt 840 caaatactgt tcaagatgtt atttcttatt catggtttac gtcaagctac aacatcacta 900 ccccctttcc acaggcgact gtcgtacgaa tcgttttacg taccaactgg gctgctaagt 960 tggattcacc atcatcatcg cgggaatgtg atcttcgtct tgccccccct acagagagta 1020 acgctaggtc attctcgatg ctactcaaca cgggtgcgac cccagaaggc acttttaacc 1080 caaacactct tcgtatgaat gtgctgcaga tgtgtcttca gtatgtgctg tctaacttac 1140 acttaaaccg tagtactcaa tttaccatgg atttgactgc cgcggctcct aatctttccg 1200 cgtctcaact ccgtattgtt ccagaggata aggagggtaa atggtttcct gtcatgtatc 1260 catcccgagt gaacatcccc ttgttcaaca agactgctga tttcgtcaat cagtgcattc 1320 gtgataggat tggccgatat gatcgtgctc aaactttcgc tggtgcacct tctgaatggg 1380 ctgacatgtg ggagacagcg gactcgctaa ctctttccgt tcgtgaaatg tggatgtcgc 1440 gtatttctca gatgaacatt actcctgctg acattgctga cgctatctcc agatgttctc 1500 agtccttgct cactgttgct gcgcctacgg ctccctctgt ggctcgcttg ttaccgtggc 1560 gggttagttc tgatgaaagg cagctcctcc aattgttaat gtacctaaat gttgggacca 1620 gtgccgacta cgtccagccg attctgtctg cgtttgctcg gaccctgtct cgtgtgtcac 1680 cattacgcat taatcccacc ctaatcgcta acgctatgtc gacgatcgtc gagagcacta 1740 ctaacaccca gagtcccgct gcggctatct tgtcaaagct taaacctgtg gcctctgatt 1800 tttccgactt cagattggcg tgtgccgctt ggttatataa cggttgcgtt cagacatacc 1860 tgtctgagga ttcatatcca agtagtggtg ggtctgtcac tagcattgac acgttggttg 1920 atatgttcgt gtgtctactg gcgttacctt tagtcactga tcctaatgct ccgtgccaag 1980 cctttatggt tgtcgctaat gccatggttg gctacgagaa tctgcctatg gacgatccta 2040 atttcactca gcagagattg gctgcagcat ttaacaatcc taccacctgg cctcagtgct 2100 tccttcaccc tcaaaatatt gatcgtcgcc agtgtcccat cctctcctgg tgggctcagc 2160 aaatccaccg taattggcct acaccatctc agattactta cggtgcacct gatatcattg 2220 gatccgccaa tcttttcact ccccctgatg tgctgctgct tccattacaa cacaggccca 2280 tacgtattac caatcccact ctgaacttcg ataatgagtt gacgacctgg cgtaacaccg 2340 tggtcgactt agtcttgcgc atcatcgaca gtggtcggta ccagcctaat tggaatcagt 2400 ccattcgcgc gtccatgcga aatgcgatga cgaatttcag gattatcaag tcttacactc 2460 ctgcctacat agcggaactg ctacccgtcg aattggcggc catcgcccca actttaccct 2520 tccagccttt ccaggtaccg tttgctcgtt tggatcgtga cgctatcgtc acccacgtca 2580 atgtatctcg gcaagctccc aacaatcttg ctcaacctgc gttaaatatg tctatgacgt 2640 accagcgcac aggagttccg atctctctca gcgcccgtcc cttagcggtc gctcttctgt 2700 caggccagta ccccactgat cctcctcttc agaccaacgt ttggtacgtg aacactctca 2760 cacctctgta ttctaatgat ggtctcttta acaacgtgca acatgcgatg gttgcctctg 2820 aagcttacgc cactttgatc actatgctgg ctcagtgcac tgacatgcaa tatcccgtgg 2880 atcgccctct gaactggttg cgtcagatta atttggctgc taatgaggcg acgatttttg 2940 gtcgctcgat caattcactt ttccagactg cctttgacct ctcgccttct actgtgttgc 3000 ttcaaccttt cttggagtct gatccacgtg caacgcaact agccatttct tacgttcgct 3060 ataatggaga cagtgagacc ttcgtaccga cagtacggcc atctatgatc tcagaggcga 3120 cattgctcgt tgagcgcact ctttcgcatg aatacaatct cttcggtcta tgccgtggtg 3180 acatcattct gggacaacac atgactccga ctgcgttcaa tcccttagct cctcctcctt 3240 ctgtcatttt taacaggggt gatgttgatg ttcatgaatt tggatctcgt agcttcgcta 3300 acttcggtat gaatggagag gagatcttgg tcatggacgc gaacggtgtg cgtcgtccac 3360 tacttggccg gtgggttatg ccgctccagc ttttgatggt gaatattggc gtatttccca 3420 agctgctgtt ggatcgtatc ttgaaaggac gtctatatat cagacttgaa gttggcgcgt 3480 atccctacac ggtgcagtac taccagggac gtgagttcac tgacggtttt acattgcttg 3540 agcaatggat gtccaaggtg tcgcccatgg gtatccctcc tgttcctttt ctcatgccac 3600 agtccgaggg acacaacatc acttcaggca tggtcactca ctacatctgg tccactgagt 3660 acaatgatgg gtcactcttt gccacgaaca ctgacctgcc ggttactgta tttgggcctg 3720 accgtaccat tccaatcgag cgctatcgtg cactcgttga tccaggcgcc ctccctgcta 3780 ctaaccaact gccgcacact atcgatctct actgctcact gagacgttac tatctggaga 3840 cgcctcccat tactgccact gtcactactt atggcgatgg actccccgcg ctgaaccatt 3900 agagcggcga ggctagacgc gagctgatcg cgtcgactct cgttggagat tattcatc 3958 //