ID FR687353; SV 1; linear; genomic RNA; STD; VRL; 5401 BP. XX AC FR687353; XX DT 03-MAR-2011 (Rel. 108, Created) DT 03-MAR-2011 (Rel. 108, Last updated, Version 1) XX DE Raspberry bushy dwarf virus gene for non-structural polyprotein, isolate DE SE3, genomic RNA XX KW . XX OS Raspberry bushy dwarf virus OC Viruses; Riboviria; Idaeovirus. XX RN [1] RP 1-5401 RA Valasevich N.; RT ; RL Submitted (03-SEP-2010) to the INSDC. RL Valasevich N., Department of Plant Biology and Forest Genetics, Swedish RL University of Agricultural Sciences, Box 7080, SE-750 07 Uppsala, SE-750 RL 07, SWEDEN. XX RN [2] RX DOI; 10.1007/s00705-010-0912-9. RX PUBMED; 21253783. RA Valasevich N., Kukharchyk N., Kvarnheden A.; RT "Molecular characterisation of Raspberry bushy dwarf virus isolates from RT Sweden and Belarus"; RL Arch. Virol. 156(3):369-374(2011). XX DR MD5; cb52bae8c90ea8b1e8c67834a9bcd21d. XX FH Key Location/Qualifiers FH FT source 1..5401 FT /organism="Raspberry bushy dwarf virus" FT /segment="RNA-1" FT /host="Rubus idaeus" FT /isolate="SE3" FT /mol_type="genomic RNA" FT /country="Sweden:Uppsala" FT /collection_date="10-Sep-2009" FT /db_xref="taxon:12451" FT CDS 77..5161 FT /product="non-structural polyprotein" FT /db_xref="GOA:F0V3Z9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F0V3Z9" FT /protein_id="CBW59110.1" FT /translation="MECLDFSKLWFSTAAGLQQRCYYDCVAWECLGDDDLQIFISGLNR FT LIGSVAVSCTGDEDLDFVVDSCNEFVTGKDLKSFFAADLPVREVSSVGCISHFIPGSVS FT GLNVSDLLDNQLYGCSVFSSDFESKLRDIRDAALSDAASGVSQLVSCHFEKDVRHLLAE FT NANSVKIPVPQKLSDDDMRILRDHFPRYELKFTQNVDGPHNMAAAHRLLETHDLLSNFP FT ADAPILDIGGNWFSHFRYGRSNVHSCCPMLDLRDNERHTHRLTMTESLMSSLRHRYAGT FT IDLDPDAHLSRKVSDSMKEFYKRWAVHPKDLIRLYAGIRDGNSSLYCHHKFGVSWNDVL FT WESERNNCLTIPKPECSFKAKYAIMVHSGYDLPLKELIGGMVQHGVVELHGTMIADPAM FT LVATSGYIPALRCNWEKSKGQIWFSFRDDSTMGYRHDWEVYSKYLTSTVVSCGKHFYVM FT ERDKYRHGVLFYSIIKCSGSLRKGDHTFFHNAWFHEMYDKYIMKVPLVKVKDLTGDEGS FT VECSWREVVMSRKLVDRVIEVCLRGVKPINFGNCDDAVHMDNLRIIQNHLLSHSQTLVL FT NGSTIIREEAIPFKDFSPVSVTIYFEILLTRYKESLSLAWFHAGLGPDFKLGSWVSSLK FT RVFYRILGFPANLLKYVLNALFRCHDKVSDMEFVKPAVEKLTVLENTYIGKSLMGDCPT FT LKEYDDSAFFNILENVGNELFNNSSTDSGKPEIPETTMTGNPNAVIAEAISYCRAEVDR FT IGKKCERILHAYQATGNCGGYLNDTDNVGVFDKMTSWVQKPKEFDHEFGWDGSSFIKLS FT WFGKIPDFVGRYLVVTDGTRVMTNLKFSRQYAAIPATVTPTIKLVDGVTGCGKTTEIVR FT RYRPGILILSVCKANVDEIRRKLTAVDSKFIRTVDSYLLSPSVTGSCDELFIDEYGLSH FT PGILLLAIHVSGIQKVTFFGDSEQIPFCNRLADFPLKYNSVEDVGLNFDREIRSTTYRC FT PQDITLSLQKMYKTKPIKTVSTVESSITIKPIKSEFEIPLPNAFDGPVLYICMTKHDES FT LLKLRWAKENISSDVRTVHAAQGLSYKNVVYFRLTRTDNDLYTRKKLPYHLVAISRHTD FT KIVYCTTKPEDSSDFSLSALKNTIKTSRDLTREASGSESSYAVVFESNSEVTTTKPEVC FT ENVRKAAEMNFPISSDALYQKEVPIYGAIPDPKGKASYNPGSVIRAIEELTPGNTSIDT FT DALDELVEVGPMSLQVGSIRWDVSKISPRLFTNNKFAVPHLPTGALLRRNTSSRQVGLA FT IEKRNANVMNSQKYFDLENLANKAVERFFDFFIDMEKFSKLPTGVLGSSADQIQTYQNK FT TGNKVTDPVCAALSPIQKYKHMIKRDVKFNLTDGAQSEYTKAATITFHQPEMTQVATAI FT FGQFKTRLLACRNKFLNIPLEHDNDLSGYLTKYHLGSENNTFTEIDFSKFDKSQGEIHQ FT LIQDLILIKFGCDPEFVALWSTAHRSFSIFDQNVGIGFKTDFQRRTGDAFTFLGNSLVT FT AAMLAFVIGDSDREKIRYMLVGGDDSLICSYGPIQVPLEPLGDIFNMSCKLVQPACPYF FT ASRHLIRRGDEILCVPDPYKLLVKLGRKDIPDNQASLCEIRTGLADSAKYIFDDIVKQK FT LAILVQVRYNKAAPSLYDALCTVHWALSSNTNFSKFYTVTNTSNEVRRNRRGVKIT" XX SQ Sequence 5401 BP; 1476 A; 1065 C; 1242 G; 1618 T; 0 other; ataagaatct gctggtctga catctatctc ttgggtatcc ttattgacta cggggattgt 60 ttacttgaga tttcttatgg agtgcttaga tttctccaag ctgtggtttt ctacggccgc 120 tggtctccag caacggtgct attacgactg tgttgcgtgg gaatgcttag gtgatgacga 180 tctacagatc ttcatttctg gcctgaaccg cctcataggt tccgttgctg tttcttgtac 240 cggcgacgaa gatttagact tcgtcgtgga ctcatgtaat gagttcgtca cggggaaaga 300 cttgaagtct ttcttcgctg ctgatctccc tgttagagag gtcagttctg tgggatgtat 360 atctcacttc attccaggtt cagtttctgg actgaatgtc tcagacttac tggataacca 420 gttgtatggt tgttctgtat tttcctctga tttcgaatcg aaactgaggg atatacggga 480 tgcggccctt tctgatgccg cgtcaggtgt ttcgcaactg gttagttgcc attttgaaaa 540 ggatgttaga caccttttgg cggagaacgc taattccgtc aagatccctg tacctcagaa 600 actcagcgat gacgatatga ggattttaag ggaccatttt ccccgttatg agttgaagtt 660 cactcagaac gtggacggcc cgcataatat ggccgccgct cataggttgt tggagactca 720 tgatttgttg tccaacttcc ccgcggatgc acctatctta gatataggtg gtaattggtt 780 ttctcatttt cgttatggga ggtccaatgt tcatagttgt tgccctatgc tagatttgag 840 ggacaatgaa cgacatactc atcgtttaac gatgactgag agtctaatgt ccagcttgcg 900 ccatcgctat gctggtacaa ttgatctcga tcccgacgct cacctttcaa ggaaggtgtc 960 tgactctatg aaagagtttt ataagcgatg ggctgtgcac cctaaagatt taattaggct 1020 gtacgccggc atacgtgacg gcaactcatc gctctattgt caccataaat ttggtgtgtc 1080 atggaacgat gttttatggg agtcggagag gaataactgc ctcactatcc caaagcccga 1140 gtgctctttt aaagctaagt atgctataat ggtgcattcc ggttacgacc tacctctgaa 1200 ggaacttatt ggaggcatgg tacaacatgg tgtggtcgag ttgcatggga ctatgatcgc 1260 tgatcctgct atgttagtcg ctacaagtgg ctatatccct gcgctgcgtt gtaactggga 1320 aaaatccaaa ggtcaaattt ggttttcttt ccgtgatgac agcacaatgg gttacaggca 1380 tgactgggag gtgtactcta agtacttgac ttccacagtc gtctcttgcg gtaagcactt 1440 ttacgtgatg gaaagagaca agtacagaca cggtgtgtta ttttatagca taattaagtg 1500 ttctggatcc cttcgtaaag gggatcacac tttttttcat aatgcctggt ttcatgaaat 1560 gtacgataaa tacattatga aggtcccctt ggtaaaggta aaggacttaa ccggtgatga 1620 aggttccgtc gagtgctctt ggcgtgaagt tgtgatgtct aggaaacttg tggatagggt 1680 cattgaggtt tgccttaggg gtgtaaaacc cattaacttt ggaaactgcg atgacgctgt 1740 tcacatggac aatctccgaa tcatccagaa ccatctactg agtcattcac aaacactggt 1800 tttaaatggt agtaccatta tcagggagga ggcgatacct ttcaaggatt tctctcctgt 1860 gtccgtaacc atatattttg aaatattgtt gacgagatac aaagaatccc tatctttagc 1920 ctggtttcac gctggtctgg gtcccgactt taagttgggt tcttgggtat cctctttaaa 1980 gagggtgttc taccggattc taggtttccc ggctaatctt ctaaagtacg ttttaaacgc 2040 actttttaga tgtcatgaca aggtttcaga catggagttt gtgaaacccg ctgtcgaaaa 2100 attgacagtg ttagagaaca cctatatagg gaaatctcta atgggcgatt gtcctactct 2160 aaaagagtat gacgattcgg ccttcttcaa tatattggag aatgtgggta atgagttgtt 2220 taacaactct agtaccgatt ccggaaaacc ggaaataccc gaaacgacca tgaccggtaa 2280 tcccaatgcg gtgatagctg aagctatcag ctactgtcga gctgaggtcg atagaattgg 2340 gaagaagtgt gagagaattc tccatgctta ccaggccact gggaattgcg gcgggtacct 2400 aaacgatact gacaatgtgg gcgtgttcga caagatgaca tcctgggtac aaaaacccaa 2460 ggagttcgat cacgaattcg gatgggatgg ctcctccttc attaaattgt cttggtttgg 2520 gaaaatacca gactttgtag gaaggtattt agtagtaact gatggaacac gtgtaatgac 2580 aaatctaaaa ttctctcgtc agtatgctgc tattccggca accgtaacac ccaccattaa 2640 attggttgat ggtgttaccg gatgtgggaa aacgactgag atcgttaggc gttatcgtcc 2700 tgggatttta atcctaagtg tatgtaaggc taacgtggat gagattagaa ggaaattgac 2760 cgccgtggac tcgaagttca ttaggaccgt tgattcttat cttctcagtc caagtgtgac 2820 cggaagttgt gatgaactct tcatagatga gtatggtctc tcgcatccgg gcattctgtt 2880 actggctatc cacgttagcg gaatccaaaa ggtcactttc tttggtgact ctgaacagat 2940 tcctttctgt aatcgccttg ccgattttcc tctaaagtac aactccgttg aagacgtggg 3000 attgaacttt gacagggaaa tcaggtctac tacttataga tgccctcagg acatcacttt 3060 gtctttacag aaaatgtata agacaaaacc gataaaaacg gtatcgactg ttgaaagctc 3120 gataactatc aaaccaataa agagcgaatt tgaaattcct ctacctaacg cgtttgatgg 3180 tcctgtgttg tacatatgca tgactaaaca tgacgaaagc cttttaaagt tgcgttgggc 3240 caaagagaac atttctagcg atgttcgaac ggtacacgca gctcaaggtt tgagttataa 3300 gaacgtcgtg tatttcaggt taactcgtac tgataacgat ttgtatacca ggaaaaaact 3360 accatatcat ttggtggcaa tttctaggca taccgataaa atcgtttact gtaccacgaa 3420 acctgaagac tcatctgact tttcgctgtc tgctctgaaa aataccatca aaacctctcg 3480 ggatttaacc cgggaggcta gtggttcaga gagctcttat gctgttgtct tcgaatcaaa 3540 ttcggaggta accacaacca aacctgaggt gtgtgaaaat gttagaaaag cagctgagat 3600 gaattttccc atttcctctg acgctttata tcagaaggaa gtgcctattt atggtgcgat 3660 acccgacccg aagggaaaag caagctacaa tccgggtagt gttatcaggg ccatagaaga 3720 attgacccca ggtaacacca gcatagatac tgatgctttg gacgagctgg ttgaagttgg 3780 tcctatgagt ttacaagttg gtagtataag atgggatgtc tctaagatat cacctcgctt 3840 gtttaccaac aataaattcg cagttccaca cctaccgact ggagccttgt taaggcgtaa 3900 tacaagcagt cgtcaggttg gattggctat agaaaagcga aacgctaacg tcatgaatag 3960 ccaaaaatac tttgatctgg aaaatttagc taacaaggcg gtggaaagat ttttcgattt 4020 ctttatagat atggagaaat tctcgaaact gccaaccgga gtcttaggct cgagtgctga 4080 ccagatacaa acgtaccaga ataaaactgg taataaggtg acggacccag tctgtgctgc 4140 cttatcccca attcaaaaat acaaacatat gattaagagg gatgtcaaat tcaatttgac 4200 tgatggtgct caaagtgagt acactaaagc tgccaccatt acttttcatc aaccagagat 4260 gactcaggtt gctactgcca tttttggtca gtttaaaact agacttttgg cttgtagaaa 4320 taagttctta aatatacctc ttgaacatga taatgatttg agtggatatt taaccaaata 4380 tcatttgggg agtgaaaata atactttcac tgaaatcgac ttttccaaat tcgataaaag 4440 tcaaggggaa atccatcaac tcattcagga tttaatcctg ataaagtttg gttgtgatcc 4500 cgagtttgta gccttatggt ctaccgccca cagaagtttt tctatttttg atcaaaatgt 4560 tggaattggt tttaaaactg atttccaaag aagaacgggc gatgccttta cttttctggg 4620 aaactctttg gtaaccgccg ccatgctggc gtttgtcatc ggtgactcag acagggagaa 4680 gattaggtac atgttggtgg gtggggacga ttctttgatc tgctcctacg gtccaataca 4740 agtgcctttg gaaccattag gtgacatatt taatatgtca tgcaagttgg tacaaccagc 4800 ttgtccttat ttcgcgtctc gccacttgat taggagaggt gacgaaattt tgtgtgttcc 4860 cgacccctac aaacttttgg tgaagttggg gaggaaagac attccggaca atcaagcatc 4920 attatgcgag atacgtaccg gattggcaga tagtgccaaa tatatctttg atgatattgt 4980 gaaacagaag ttggctattc ttgtacaggt gcgctataat aaagctgcac ctagtttata 5040 tgatgccctt tgtactgtgc attgggcatt gtcttccaat accaatttct cgaagtttta 5100 cactgttact aacacttcta atgaagtgcg aaggaacaga agaggtgtta agattactta 5160 acaccattat aattctgcag cattttctat tgaccggctt agtaataagt ctttgcctgt 5220 ctcttttcaa tgctgttgtt ggttttaaaa ccaaaaagta tctaaatctt gaagatttaa 5280 agataaatct tgaaaaggaa cttttcaagc acaaggtctt gaatgagtct ctctcaagga 5340 gacaaggttt cttaagccta gctcactagg cttaactccc aatttgggag ttgtccttac 5400 g 5401 //