ID FR687350; SV 1; linear; genomic RNA; STD; VRL; 5402 BP. XX AC FR687350; XX DT 03-MAR-2011 (Rel. 108, Created) DT 03-MAR-2011 (Rel. 108, Last updated, Version 1) XX DE Raspberry bushy dwarf virus gene for non-structural polyprotein, isolate DE BY3, genomic RNA XX KW . XX OS Raspberry bushy dwarf virus OC Viruses; Riboviria; Idaeovirus. XX RN [1] RP 1-5402 RA Valasevich N.; RT ; RL Submitted (03-SEP-2010) to the INSDC. RL Valasevich N., Department of Plant Biology and Forest Genetics, Swedish RL University of Agricultural Sciences, Box 7080, SE-750 07 Uppsala, SE-750 RL 07, SWEDEN. XX RN [2] RX DOI; 10.1007/s00705-010-0912-9. RX PUBMED; 21253783. RA Valasevich N., Kukharchyk N., Kvarnheden A.; RT "Molecular characterisation of Raspberry bushy dwarf virus isolates from RT Sweden and Belarus"; RL Arch. Virol. 156(3):369-374(2011). XX DR MD5; 35d05668c55bc3be58d3770ca6de4103. XX FH Key Location/Qualifiers FH FT source 1..5402 FT /organism="Raspberry bushy dwarf virus" FT /segment="RNA-1" FT /host="Rubus idaeus" FT /isolate="BY3" FT /mol_type="genomic RNA" FT /country="Belarus:Minsk" FT /collection_date="30-Aug-2009" FT /db_xref="taxon:12451" FT CDS 78..5162 FT /product="non-structural polyprotein" FT /db_xref="GOA:F0V3Z6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F0V3Z6" FT /protein_id="CBW59107.1" FT /translation="MECLDFSKLWFSTAAGLQQRCYYDCVAWECLGDDDLQIFISGLNR FT LIGSVAVSCTGDEDLDFVVDSCNEFVTGRDLKSFFAADLPIREVSSVGCISHFIPGSVS FT GLNVSDLLDNQLYGCSVFSSDFESKLRDMRDAALSDAASGVSQLVSCHFEKDVRHLLAE FT NANSVKIPVPQKLSDDDMRILRDHFPRYELKFTQNVDGPHNMAAAHRLLETHDLLSNFP FT ADAPILDIGGNWFSHFRYGRSNVHSCCPMLDLRDNERHTHRLTMTESLMSSLRHRYAGT FT IDLDPDAHLSRKVSDSMKEFYKRWAVHPKDLIRLYAGIRDGNSSLYCHHKFGVSWNDVL FT WESERNNCLTIPEPECPFKAKYAIMVHSGYDLPLKELIGGMVQHGVVELHGTMIADPAM FT LVATSGYIPALRCNWEKSKGQIWFSFRDDSTMGYRHDWEVYSKYLTSTVVSCGKHFYVM FT ERDKYRHGVLFYSIIKCSGSLRKGDHTFFHNAWFHEMYDKYIMKVPLVKVKDLTGDEGS FT VECSWREVVMSRKLVDRVIEVCLRGVKPINFGNCDDAVHMDNLRIIQNHLLSHSQTLVL FT NGSTIIREEAIPFKDFSPVSVTIYFEILLTRYKESLSLAWFHAGLGPDFKLGSWVSSLK FT RVFYRILGFPANLLKYVLNALFRCHDKVSDMEFVKPAVEKLTVLENTYIGKSLMGDCPT FT LKEYDDSAFFNILENVGNELFNNSSTDSGKPETPEMTVTGNPNVVIAEAISYCRAEVDR FT IGKKCERILHAYQATGNCGGYLNDTDNVGVFDKMTSWVQKPKEFDHEFGWDGSSFIKLS FT WFGKIPDFVGRYLVVTDGTRVMTNLKFSRQYATIPATVTPTIKLVDGVTGCGKTTEIVR FT RYRPGILILSVCKANVDEIRRKLAAVDSKFIRTVDSYLLSPSVTGSCDELFIDEYGLSH FT PGILLLAIHISGIRKVTLFGDSEQIPFCNRLADFPLKYNSVEDVGLNFDREIRSTTYRC FT PQDITLSLQKMYKTKPIKTVSTVESSITIKPIKSEFEIPLPNAFDGPVLYICMTKHDES FT LLKLRWAKENVSSEVRTVHAAQGLSYKNVVYFRLTRTDNDLYTRRKLPYHLVAISRHTD FT KIVYCTTKPEDSSDFSLSALKNTIKTSRDLTQEASGSESSYAVVFESNSEVTTTKPEVC FT ENVRKAAEMNFPVSSDALYQKEVPIYGAIPDPKGKASYNPGSVIRAIEELTPGNTSIDT FT DALDELVEVGPMSLQVGSIRWDVSKISPRLFTNNKFAIPHLPTGALLRRNTSSRQVGLA FT IEKRNANVMNSQKYFDLENLANKAVERFFDFFIDMEKFSKLPTGVLGSSAEQIQTYQNK FT TGNKVTDPVCVALSPIQKYKHMIKRDVKFNLTDGAQSEYTKAATITYHQPEITQVATAI FT FGQSKTRLLACRNKFLNIPLEHDSDLSGYLTKYHLGSENNTFTEIDFSKFDKSQGEIHQ FT LIQDLILIKFGCDPEFVALWSTAHGSSSIFDQNVGIGFKTDFQRRTGDAFTFLGNSLVT FT AAMLAFVISDPDREKIRYMLVGGDDSLICSYGPIQVPLEPLGDIFNMSCKLVQPACPYF FT ASRYLIRRGDEILCVPDPYKLLVKLGRKDVPDNQASLCEIRTGLADSAKYIFDDTVKQK FT LAILVQVRYNKAAPSLYDALCTVHWALSSNTNFSKFYTVTNTSNEVRRNRRGVKIT" XX SQ Sequence 5402 BP; 1476 A; 1057 C; 1247 G; 1622 T; 0 other; ataagaatct gctggtccga catctatctc ttgggtatcc ttattgacta cggggattgt 60 ttacttgaga ttttcttatg gagtgcttag atttctccaa gctgtggttt tctacggccg 120 ctggtctcca gcaacggtgc tattatgact gtgttgcgtg ggaatgcctg ggcgatgacg 180 atctacagat cttcatttcc ggcctgaacc gcctcatagg gtccgttgct gtttcttgta 240 ctggcgacga agatttggac ttcgtcgtgg actcatgtaa tgagttcgtc acggggagag 300 acttgaagtc tttcttcgct gctgacctcc ccattagaga ggtcagttct gtgggatgta 360 tatctcactt cattccaggt tcggtttctg gactgaatgt ctcggactta ctggataacc 420 agttgtatgg ttgttctgta ttttcctctg atttcgaatc gaaactgagg gatatgcggg 480 atgcggccct ttctgatgcc gcgtcgggtg tttcgcaact agttagttgc cattttgaaa 540 aagatgttag acacctcttg gcggagaatg ctaattccgt caaaatccct gtacctcaga 600 aactcagtga tgacgatatg aggattttaa gggatcactt tcctcgttat gagttgaagt 660 tcactcagaa cgtggacggc ccgcacaata tggccgccgc tcataggttg ttggagactc 720 atgatttgtt gtccaacttc cctgcggatg cacctatctt ggatataggt ggcaattggt 780 tttctcattt tcgttatggg aggtccaatg ttcatagttg ttgccctatg ctagatttaa 840 gggacaatga acgacatact catcgtttaa cgatgactga gagtctaatg tccagcttgc 900 gccatcgcta tgctggtaca attgatctcg atcccgacgc tcacctttca aggaaggtgt 960 ctgactctat gaaagagttt tataagcgct gggctgtaca ccctaaagat ttaattaggt 1020 tgtacgccgg catacgtgac ggcaactcat cgctctattg tcatcataaa tttggtgtgt 1080 catggaacga tgttttatgg gagtcggaga ggaacaactg cctcactatc ccggaacctg 1140 agtgcccttt taaagctaag tatgctataa tggtgcattc cggttatgac ctacctctaa 1200 aggaacttat tggaggcatg gtacaacatg gcgtggtcga gttgcatggg actatgatcg 1260 ccgatcctgc tatgttagtc gctacaagtg gctatatccc tgcgctgcgt tgtaattggg 1320 aaaaatccaa aggtcaaatt tggttttctt tccgagatga cagcacaatg ggttacaggc 1380 atgactggga ggtgtactct aagtatttga cctccacagt cgtctcttgc ggtaagcatt 1440 tttacgtgat ggaaagagac aagtacagac acggtgtgtt attttatagc ataattaagt 1500 gttctggatc ccttcgtaaa ggggatcaca cttttttcca taatgcctgg tttcacgaaa 1560 tgtacgataa gtacattatg aaagtcccct tggtaaaggt aaaggactta accggtgatg 1620 agggttccgt cgagtgttct tggcgtgaag ttgtgatgtc taggaaactt gtggataggg 1680 tcattgaggt ttgccttagg ggtgtaaaac ccatcaactt tggaaactgc gatgacgctg 1740 ttcacatgga caatctccgg atcatccaga accatctgct gagtcattca caaacactgg 1800 ttttaaatgg tagtaccatt attagggagg aggcgatacc ttttaaggat ttctctcctg 1860 tatccgtgac tatatatttt gaaatattgt tgacgagata caaggaatcc ctatctttag 1920 cctggtttca tgctggtctg ggtcccgact ttaagttggg ttcttgggta tcctctttaa 1980 agagggtgtt ctaccggatt ctaggtttcc cggctaatct tctaaagtac gttttaaacg 2040 cactttttag atgtcatgac aaggtttcag acatggagtt tgtgaaaccc gctgtcgaaa 2100 aattgacagt gttagagaac acctatatag ggaaatctct aatgggcgat tgtcctactc 2160 taaaagagta tgatgattcg gccttcttca acatattgga gaatgtgggc aatgagttgt 2220 ttaacaactc tagtaccgat tccggaaaac cggaaacacc cgaaatgacc gtgaccggta 2280 atcccaatgt agtaatagct gaggctatca gctactgtcg agctgaggtc gatagaattg 2340 ggaagaagtg tgagagaatt ctccatgcct accaggccac tggaaattgc ggcgggtacc 2400 taaacgatac tgacaatgta ggcgtgttcg acaagatgac gtcctgggta caaaaaccca 2460 aggagttcga tcacgaattt ggatgggatg gctcctcctt tatcaaattg tcttggtttg 2520 ggaaaatacc ggactttgta ggaaggtatt tagtagtgac tgatgggaca cgtgtaatga 2580 caaatctgaa attttctcgt cagtatgcta ctattccggc aacagtaaca cccaccatta 2640 aattggttga tggtgttacc ggatgtggga aaacgactga gatcgttagg cgttatcgtc 2700 ctgggatttt aatcctaagt gtatgtaagg ctaacgtgga tgagattaga aggaaattag 2760 cggccgtgga ctcgaagttc attaggaccg ttgattctta tcttctcagc ccgagtgtga 2820 ccggaagttg tgatgaactc ttcatagatg agtatggtct ctcgcatccg ggcattctgt 2880 tactggctat ccacattagc ggaatccgaa aggtcactct ctttggtgac tctgaacaga 2940 ttcctttctg caatcgcctt gccgatttcc ctctaaaata caactccgtt gaagacgtgg 3000 gattgaactt tgacagggaa atcaggtcta ctacttatag atgccctcag gacatcactt 3060 tgtctttaca gaaaatgtat aagacaaaac cgataaaaac ggtatcgact gttgaaagtt 3120 cgataaccat caaaccaata aagagcgaat ttgaaattcc tctacccaat gcgtttgatg 3180 gtcctgtgtt gtacatatgc atgactaaac atgatgaaag ccttttaaaa ttgcgttggg 3240 ccaaagagaa cgtttctagc gaagttcgaa cggtgcacgc ggctcaaggc ttaagttata 3300 agaacgtcgt gtatttcagg ttaactcgta ctgacaacga tttgtatacc aggagaaaac 3360 tgccatatca tttggtggca atttctaggc atactgataa aatcgtttat tgtaccacga 3420 aacctgaaga ctcatctgac ttttctctat ctgctctaaa aaataccatc aaaacctctc 3480 gggatttaac ccaggaggcc agtggttcag agagctctta tgctgttgtc ttcgaatcga 3540 attcggaggt aaccacaacc aaacctgagg tgtgtgaaaa tgttagaaaa gcagctgaga 3600 tgaattttcc cgtttcctct gacgctttat atcagaagga agtgcccatt tatggtgcaa 3660 tacccgatcc gaagggaaaa gcaagttata atccgggtag tgttatcagg gccatagaag 3720 aattgacccc aggtaacacc agcatagata ctgatgcttt ggatgaacta gttgaagttg 3780 gtcctatgag tttacaagtt ggtagtataa gatgggatgt ctctaagata tcaccgcgct 3840 tgtttactaa caacaaattc gcaattccac acctaccgac cggagccctg ttaaggcgta 3900 acacaagcag tcgtcaggtt ggattggcta tagaaaagcg aaacgctaac gtcatgaata 3960 gccaaaaata ctttgatctg gaaaatttag ctaacaaggc ggtggagaga ttttttgatt 4020 tctttataga tatggagaaa ttctcgaaac tgccaactgg agtcttaggc tcgagtgctg 4080 aacagataca aacataccag aataaaactg gtaataaggt gacagaccca gtctgtgttg 4140 ccttatcccc aattcaaaaa tacaaacata tgattaagag ggatgtcaaa ttcaatttga 4200 ctgatggtgc tcaaagtgag tatactaaag ctgccaccat tacttatcat caaccagaga 4260 taactcaggt tgctactgcc atttttggtc agtctaaaac tagactgttg gcttgtagga 4320 ataagttttt aaatatacct cttgaacatg atagtgattt gagcggatat ttaaccaaat 4380 atcatttggg gagtgaaaat aatactttca ctgaaattga cttttctaaa tttgataaaa 4440 gtcaagggga aatccatcaa cttattcagg atttaatcct gataaagttt ggttgtgatc 4500 ccgagtttgt agccttatgg tctaccgccc acggaagttc ttctattttc gatcaaaatg 4560 ttggaattgg ttttaaaact gatttccaaa gaagaacggg cgatgctttt acttttctgg 4620 gaaactcttt ggtaactgcc gccatgctgg cgtttgtcat cagtgaccca gacagggaga 4680 agattaggta catgttggtg ggtggggacg attctttgat ctgctcctac ggtccaatac 4740 aagtaccttt ggaaccatta ggtgacatat ttaatatgtc gtgcaagttg gtacaaccag 4800 cttgtcctta tttcgcgtct cgctatttga ttaggagagg tgacgaaatt ttgtgtgttc 4860 ccgaccccta caaacttttg gtgaagttgg ggaggaaaga cgttccggac aatcaagcat 4920 cattatgcga gatacgtacc ggattggcag atagtgccaa atatatcttt gatgatactg 4980 tgaaacagaa gttggctatt cttgtacagg tgcgctataa taaagctgca cctagtttat 5040 atgatgccct ttgcactgtg cattgggcat tatcttctaa taccaatttc tcgaagtttt 5100 acactgttac taacacttct aatgaagtgc gaaggaacag aagaggtgtt aaaattactt 5160 aataccatta taattctgca gcattttctt ttgaccggct tagtaataag tctttgcctg 5220 tctcttttca atgctattat tggttttaaa accaaaaagt atctaaatct tgaagattta 5280 tagataaatc ttgaaaagga acttttcaag cacaaagtct tgaatgagtc tctctcaagg 5340 agacaaggtt tcttaagcct agctcactag gcttaactcc caatttggga gttgtcctta 5400 cg 5402 //