ID FN908129; SV 1; linear; genomic RNA; STD; VRL; 6350 BP. XX AC FN908129; XX DT 21-JUN-2010 (Rel. 105, Created) DT 10-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Black raspberry necrosis virus segment RNA2, strain Alyth XX KW . XX OS Black raspberry necrosis virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-6350 RA MacFarlane S.A.; RT ; RL Submitted (03-JUN-2010) to the INSDC. RL MacFarlane S.A., Plant Pathology, Scottish Crop Research Institute, RL Invergowrie, Dundee, DD2 5DA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-010-0807-9. RX PUBMED; 20878193. RA McGavin W.J., McMenemy L.S., Macfarlane S.A.; RT "The complete sequence of a UK strain of black raspberry necrosis virus"; RL Arch. Virol. 155(11):1897-1899(2010). XX DR MD5; 8731547597f013444cd2e98a72179fe1. DR EuropePMC; PMC5407059; 28496438. XX FH Key Location/Qualifiers FH FT source 1..6350 FT /organism="Black raspberry necrosis virus" FT /segment="RNA2" FT /strain="Alyth" FT /mol_type="genomic RNA" FT /country="United Kingdom:Tayside" FT /isolation_source="symptomatic red raspberry" FT /identified_by="W McGavin, S MacFarlane" FT /db_xref="taxon:367301" FT CDS 220..5421 FT /product="viral polyprotein" FT /db_xref="GOA:D8MIA7" FT /db_xref="UniProtKB/TrEMBL:D8MIA7" FT /protein_id="CBM42549.1" FT /translation="MLWFLIYFILLLVILLLSFYSLVLIPYNSPAYVFVELREKRLRFR FT FTCTVRYSFRSLLVEQVIGALFWIALIYLVRVVHSSFRLLFRVSARTLAKFISLSKSLY FT VMSSSNIQEAYDRAAASFNDTSSSIAQAIALSRDNAWLAKPDECESAITTMLSKGKIYV FT TKSVMNKLLWRSIPTSVLGHFNTGFVPAVSASESKTPTVSNVVLSKAVRDYLVKAGSFS FT AQYKTSATGKIRGVTTQQPAAIVRVDVMSLRTESLVTQSNAGVTLSLALDGRAKEPEAA FT ILGGHLHFTKDDAISTSLFYPRFSLSTQEKNIDECVQVWSTSQGYNLKPGSIASATCSA FT VVGEVTTQIGATSMIAPVMDQLERSKKQTMSLGALPIHPHRPTQNNIDEVVMDWEGATT FT SLDFVGSAAGVSEWAPRSSSGNRSIRFSGLKTIDGPGTSDDKHYITQEEMHEEESPREP FT RERPNVRPRPARNYEDDFVEEGGEMPMQPIVIAKEHIHFPDSDYLKEDVHIYTGSVSVP FT QVSTDTAVLAFLNLFEGMGLDDSKDPFISKLKLASLVVPKFKVRVRFSLPSMYSCPIII FT SWDEGRCIGDTYALEDLVQLPFCVVGPTVGQAYTDFSFETYGRTGAFSLARKISCSAGT FT LYFSCMPHDFATLEGKISLHYEVWLGQGTIISQGLFPQLPNQKATLVTGLTERTYCANL FT VGNTHLGRMVLDHNTDTEKFFLLAVRPGVGAISSDGKTVYGSNMSALCANWAFWNGTAC FT ISVNITARQNVAGQLSIYTLPPGYNTRKLREKDCYHWPREVITFNGSQVYQFKALANSW FT LGACSTVGGAFVDQNDQNGNTLSFAVFINAGPSSCAGFSAQVDVLFTLTNIEDLTLSER FT ITPQTHRAPRPTANYAPRKPWESKVLATQTEEIVEQGFGIQPPNFHRLYTLRNLKQTSE FT ETWILPFTLAEPKRSNWKNCKVYNYESPELAADKEPLVIIDSTNPYRLLVQGSCFYSCH FT LEASVSLSSTKKKASAVTVGILKNPFYHKEIGRAQKDGDVFGGGLRDATSILPGNIAIL FT TQPERENIRSCCRPDLEKSGRAFLDTPSFLCIIIPANSDVTEVEVGYSVKGPLSLYGIG FT LPSPVDIPPTSKDRYMPHLTVGNPVIAVTSESSALMPIGWWDSLKEEKLWSKYRKHCEL FT REPTKEHIQYLERKFRDNCFRVYNVYEPDAELKSRMHMKFTKPRFTPGQDYALNMQFWL FT GSSRDNMYELIWRFDDTYPEGYIISYSTNMGNGNWDRHTQWMSSLDRFAPRNEVDFGIQ FT KHSDHSMTIFIDGLKAGEVRGCTPLGNILAGWEYQVDLRFALVRKGTIPFSFRPSGTLC FT DVYINDLPSPMSLVRVETTSIQSNTSMYPPEPVRVGTAPAKLDYYLSDNISFAKRGANR FT SVIQASRKRIEKHGKLEEVVGEEEGGTRGEEIPTQEILSASPYLGSTIPVAYNTNIKGK FT GKGVEPMERVRIGASWMRERNGRRRPEPMYPYGKLEKLDESLRNEPQTEKHHHFKWRGV FT ETSKGKDFHVCHRTGRTPFYGCCEKDERPVNIIPEVIREEAEESVRRRVIEALNPDELF FT EQYSHMYVQDTLMEACQLTLQDFPPGNIKYVDVLDGVLKEFGVEVRDYKYRENCGCCGK FT KEMTLQCTKGWRLNALKRGGFSVREGKRIGLDYLGSPSWTSGLIGVTSDLTPVVDSPTF FT SGLVDQVANSMMAENRNNVPGYLKELEKFHPGALGL" FT mat_peptide 220..1191 FT /product="movement protein" FT mat_peptide 1192..3954 FT /product="coat protein large" FT mat_peptide 3955..5418 FT /product="coat protein small" XX SQ Sequence 6350 BP; 1678 A; 1426 C; 1579 G; 1667 T; 0 other; atcaaagcgc actgaaccca agtttactga aaatttacat ttcacattta ctggttacgt 60 tctttttcgt tcacctcgtt ggaattcgct aattccaaca atcacattta ctgaaacagt 120 ttacagaagc tcactggaac cgatccaccg tcgttttcta tcctctgatc gagtacacct 180 gattagagct tttcatccat tctattccgt gaggatgtca tgctctggtt tttgatctac 240 ttcatcttgt tacttgtgat tctgctactc tcattctact cactggtgct tatcccatac 300 aattcaccag cttacgtgtt tgtggagttg cgtgagaagc gtctcaggtt tcgattcact 360 tgcacagttc gctactcgtt ccgatccttg cttgttgagc aggtgattgg agccctcttt 420 tggatagccc ttatctactt agtaagggtt gttcattcct cttttcgact attgtttcgt 480 gtatcagcac gcaccttagc gaaattcatt tctttgtcta aatctctcta tgtcatgtcg 540 agctctaaca tccaggaagc ctatgacagg gcggcagcgt ctttcaatga cactagctca 600 tctattgcgc aagctattgc actgtccagg gataatgcat ggctggcaaa accagatgag 660 tgtgagtcgg cgatcacgac catgcttagt aaagggaaaa tttacgtcac gaaaagcgtg 720 atgaataaac tattgtggcg ttcaataccc acatctgtcc ttggtcattt caacacgggt 780 tttgtccctg cagtatcagc ttcagaatcc aaaacgccca cagtctcaaa tgtggtgcta 840 agcaaagctg ttcgggacta ccttgtcaaa gcggggagct tttcagcgca atacaagacc 900 agcgctacag ggaagataag aggggtcacc acacaacaac ctgccgccat agtgcgagta 960 gatgtcatgt ctctgaggac cgagtcattg gtcacgcaat caaatgctgg tgtcacattg 1020 tcgctagcac ttgatgggcg agcaaaagaa ccggaggctg ctattttggg tggtcacttg 1080 catttcacga aggacgacgc tatctccacc tcgttgttct acccccgttt tagtttgtca 1140 acccaggaaa agaacataga tgagtgcgtc caagtttggt ccacttcaca gggttacaac 1200 ttgaaaccgg ggtctatagc gtctgctacc tgctcggcag tggttggcga ggtcaccacc 1260 caaattgggg cgacatcaat gatagccccc gttatggatc aacttgagag atccaagaag 1320 cagacaatgt cactcggggc tctacccatt cacccacaca gacccactca gaataacatt 1380 gatgaggtcg tgatggattg ggaaggagcc accacctcgc tggattttgt tgggagtgct 1440 gccggtgtta gtgagtgggc accaagaagc tcgagtggaa atcgctcaat tcggttctcg 1500 ggattaaaga ccatcgatgg acctggcaca tcagatgaca agcattacat cactcaggaa 1560 gagatgcatg aggaggagag cccaagggaa cccagggaga ggcccaatgt tagaccccgc 1620 cctgcgagga attatgagga cgatttcgtg gaagaaggag gcgagatgcc catgcagcca 1680 attgtcattg caaaggaaca cattcatttc ccggatagtg attatctcaa ggaggatgtc 1740 catatttaca ccgggagtgt gtccgtaccc caggtttcca ctgatacagc tgtcctcgca 1800 tttctcaatc ttttcgaggg catgggcttg gacgattcga aggatccttt catcagcaaa 1860 cttaaattgg caagtcttgt tgtgccaaag ttcaaggtca gagttcgatt ttcattgcca 1920 tcgatgtact cttgccccat cattatatct tgggacgagg gccgttgtat cggagatact 1980 tatgcactgg aagatttggt gcaattgcct ttttgcgtcg tgggaccgac cgtagggcag 2040 gcttacactg acttctcatt cgagacctac gggagaacag gggcattctc acttgcgcgg 2100 aaaatttcat gtagtgctgg caccctctac ttttcttgta tgccccatga ttttgctaca 2160 ttggagggca agattagctt gcattacgag gtttggttgg gacaaggaac catcatcagt 2220 caggggctct ttccacaatt gcccaatcag aaggccaccc tagtgactgg attgaccgag 2280 cgcacttatt gtgccaattt ggtgggtaac actcaccttg gaagaatggt tttggatcac 2340 aacaccgata cagaaaaatt cttcttgcta gccgtcagac ctggtgttgg ggccatttcg 2400 agtgatggga agaccgttta tggttcgaac atgtcagctc tttgtgccaa ttgggctttc 2460 tggaatggga ctgcctgtat ttcagtcaac atcacagcac ggcaaaatgt agctggccaa 2520 ctctccattt acacgttacc acctgggtac aacacaagga agttgcggga gaaggattgt 2580 taccactggc caagagaggt catcactttc aatggttctc aggtctatca atttaaggca 2640 ctcgcgaact cttggttggg tgcatgttcg actgtcggtg gagccttcgt agaccaaaat 2700 gatcagaatg ggaacactct ctctttcgcc gtattcataa atgctggtcc atccagttgt 2760 gccggtttta gcgcccaggt cgatgtgctc ttcactctca ccaacattga ggatctcact 2820 ctatcagagc gcatcactcc acaaactcac agggctccaa gacctactgc caactatgca 2880 cctcggaaac cctgggagag taaagttctg gccacacaga ccgaggagat tgttgagcag 2940 ggttttggaa ttcagccgcc caactttcat aggctctaca ctctgcgcaa tcttaaacaa 3000 acaagtgagg agacttggat tttgccattc acactggccg agccaaagag gagcaattgg 3060 aagaattgca aggtttacaa ctatgaatct cctgagttgg cagcagacaa ggagccactc 3120 gttatcattg attccactaa cccttaccgg cttctggttc aagggagttg cttctacagt 3180 tgtcacctgg aggcatcagt ctcattgtcc agcacgaaaa agaaggcgag tgccgttact 3240 gttggcatcc tcaagaatcc attttaccac aaggagatag ggcgagcgca aaaagacgga 3300 gatgtctttg gtggtggttt gagagacgca acttctattc tcccaggcaa cattgctata 3360 cttactcaac ctgagaggga gaatattcgt tcttgttgtc gtccagatct tgaaaaatcg 3420 ggcagagctt tcctagacac accatccttt ctctgcataa taataccagc caatagtgac 3480 gtcacggagg tggaagtagg gtactctgtc aagggtcccc tatcactgta tggaatcggt 3540 ctgccttccc ctgtcgatat accacctact agtaaggatc gatacatgcc acatctcact 3600 gttggcaatc ctgtcattgc tgtcacatct gaaagctcag ccctgatgcc tattgggtgg 3660 tgggattctc tcaaagaaga aaaattgtgg tcaaaatacc ggaagcattg tgagctaaga 3720 gaacccacca aggagcatat acagtacctg gagaggaagt tcagagacaa ttgtttcagg 3780 gtttataacg tctatgaacc cgatgctgaa ctcaagtccc gtatgcacat gaagtttacc 3840 aagcccagat ttacaccagg tcaggactac gccctcaaca tgcagttttg gttggggagc 3900 tcaagggaca acatgtatga actcatatgg cgttttgatg acacctatcc cgagggctac 3960 atcatatcgt actctaccaa catgggtaat ggaaactggg ataggcacac tcaatggatg 4020 tccagtctgg atagatttgc gcccaggaat gaggtcgatt tcggcatcca gaaacactcg 4080 gatcacagca tgactatttt tattgatggt ctcaaggctg gagaagtgcg tggttgcacc 4140 ccactcggaa acattttggc aggatgggag taccaagttg atttgagatt tgctctagtg 4200 aggaaaggga ctattccatt ctcgttccgc ccatcgggga ctttatgtga tgtgtacatc 4260 aatgatcttc caagtccgat gtccctggtg agagttgaaa caacatcaat acaaagcaac 4320 acttccatgt acccacctga accggttcgg gtcgggactg caccagctaa actggattac 4380 tacttgtctg ataatatcag ttttgcaaag aggggagcga acaggagcgt catccaggcg 4440 agcaggaaac gcatcgagaa acatgggaaa cttgaggaag ttgttggtga agaggaagga 4500 ggaaccagag gagaggagat tcctactcaa gagatacttt cggcgagtcc atatcttggt 4560 tcgaccattc cggtcgctta caacaccaac atcaagggta aaggaaaggg tgttgaaccg 4620 atggaaaggg tacgaatagg agcgtcctgg atgagagaga ggaatggaag acggaggccc 4680 gaacctatgt atccgtacgg caagctcgag aaattggacg aatcactgag gaacgagcca 4740 cagacagaga agcaccatca ctttaaatgg aggggtgtgg agacctcgaa aggaaaggac 4800 ttccatgttt gtcataggac aggaaggact cccttttatg gttgctgtga aaaggatgag 4860 aggccggtca acattattcc tgaggtcatt agggaggaag ctgaggagag cgtgagacgc 4920 agagtgatag aagctctcaa ccctgacgaa ttattcgaac agtactcaca tatgtatgta 4980 caagatacac tgatggaagc ctgccaactc acattgcagg attttccccc cggtaatatt 5040 aagtacgtgg atgttctaga tggagtactt aaggaatttg gggtcgaagt tcgtgattat 5100 aaatacagag agaactgtgg ttgttgcgga aagaaggaga tgacactaca gtgtaccaaa 5160 ggctggcgcc tgaatgctct caagagggga ggcttttccg ttagggaagg caagagaatc 5220 ggtctcgact accttgggtc tccatcgtgg actagtggct tgattggcgt aacaagtgat 5280 ctcacgcctg ttgtcgattc accaacattt agtggcttag tggatcaggt ggcaaatagt 5340 atgatggctg agaacagaaa taatgtgcct ggttacctca aagaacttga gaagttccac 5400 cctggtgctc ttgggttgta atttactata gtttttggat taaagttttt ggaccaaact 5460 ataaatggta tccggttttc cctgccttaa aggggttcac aaggataatg tctagtggac 5520 aacctgtact tcactgtatg ggccacttgg tgtacgtcag gcttcaatga tctggcggtc 5580 ctatcacatt cttggaatta acctagttaa ggagaaatcc gtgtgtagcc ttgaatagac 5640 gaggcaaata gctctgcacg ctgctattaa aataaggatc gtgtgcccag tcccggttag 5700 aaggacaccc acatttcata agattagtat tgattgggag aaagggtaag gagtattcat 5760 ccgtgtaacg ctctgtgaac tggatcccca taccaagaaa ttctgaactt tttgtggtta 5820 gtttgttgga actctaaacc aatagcccaa ccccggttag aagggtcgag tgattctacg 5880 ttagtgaatc agaacctcgg gagagttttc ctaggatccg gaccgaattc tggcagcttg 5940 catggcaaga tacactgtag atgagaggct tgataaccct cttgcagtag gcaaggcaat 6000 agcttttctg tcggcggtag cgtcccggcc cttgtttatg ttcgcccgat cagtgaaagg 6060 ccgatccttg tatcgttaaa catggaatcg ggagatttat cctaggatcc agaccgaatt 6120 ctggcagctt gcatggcaag atgataccga gtatcactaa actcggaaac tgggaagtcg 6180 gtccagtgta aataccgacc attgttggca gcaattttct gtcaagtatg gtacgctttt 6240 gtgccacgaa tgagcacttg ctcgcaaaaa gattttactt agttgtatgt cctaatttct 6300 tgcggggata gatcgtaagg tagatccccg tatgtaactt agttagatgt 6350 //