ID FN908128; SV 1; linear; genomic RNA; STD; VRL; 7572 BP. XX AC FN908128; XX DT 21-JUN-2010 (Rel. 105, Created) DT 10-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Black raspberry necrosis virus segment RNA1, strain Alyth XX KW . XX OS Black raspberry necrosis virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-7572 RA MacFarlane S.A.; RT ; RL Submitted (03-JUN-2010) to the INSDC. RL MacFarlane S.A., Plant Pathology, Scottish Crop Research Institute, RL Invergowrie, Dundee, DD2 5DA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-010-0807-9. RX PUBMED; 20878193. RA McGavin W.J., McMenemy L.S., Macfarlane S.A.; RT "The complete sequence of a UK strain of black raspberry necrosis virus"; RL Arch. Virol. 155(11):1897-1899(2010). XX DR MD5; a5df48787a37aae050711094757f75f0. DR EuropePMC; PMC5407059; 28496438. XX FH Key Location/Qualifiers FH FT source 1..7572 FT /organism="Black raspberry necrosis virus" FT /segment="RNA1" FT /strain="Alyth" FT /mol_type="genomic RNA" FT /country="United Kingdom:Tayside" FT /isolation_source="symptomatic red raspberry" FT /identified_by="W McGavin, S MacFarlane" FT /db_xref="taxon:367301" FT CDS 149..6640 FT /product="viral polyprotein" FT /db_xref="GOA:D8MIA6" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:D8MIA6" FT /protein_id="CBM42548.1" FT /translation="MSYLTKDLAAFIESAIATGYSFDNACELYQRFKIVELNANPVSRA FT FCRTYKEWVDEQFTIPTPEDIDILTVDTVDPLTAAEPNHSEAEDVDTDSCDSCDSADGP FT SSPISVLRSPLEGFDVDIGEANKSLGIDVSAYPCLPKGKENCDLKNIMAGHLFSSPIFP FT ISAIKHEILAEKDLNRLASLFDVVNTVTHSIGLEQEGFSLSSLTGAIKSRISGATGLAA FT SMVDIVANLSSASSLLEKIFQRIITAFDYIASSIGTFGTFLTGIKEKIIEKCTALWEKL FT AEWGDHFYYIIPTFCAVFLVSITCFLINKFLAAVAPTYCFSMSVIVHLIVVCCALVGCK FT ELGAALLSLTKAGKLNFLNMIYSTFGAEAGEANITVDDKQPSTFHGVDGVFEDVPLSEG FT ASSMTGFFGVLGLLTFFTPKELKFDLYEMTKWAHGLKGLADGYEKFKVVAEKLAFWAYE FT KVGLAATWDAPAIQSMILVTGIRFQDWCKEVDLLAVEMQGSASLQEDLSRARKLKEQGL FT KIQDYMVRGDSSISFMMRERLKATMGVINDIVSKFEKAIDIGGTRMCPFTVLFFGAPGV FT GKSNTMGPFMHEIMDRNGESKIGRVYPRNSGDEHWSHYMRQTALVYDEFAQRTPTPGRS FT DELELIPLVSCNHYPLVGAAIADKGLSFNSKYIFMCSNRADVSAGAGLADPDAFRRRRH FT VCVEVFKNDNLPFRPDEPYYNQMFQLRNPLRPKDPLTYIDEAGHQQPYPRMTYGELCLY FT VAEKSAEHFDKEAQSLKFMRKVQGLQEQEEFVQEGPLTDFHGSLIISPKAISEISMPHF FT HNTDDNHQIHGCTNHKVFCCSLFGTKCDVEHTAAEISYVKMIQDDVHPHAYSTNLAISL FT AQSDRTLWDVKGFRKMVKRIKGYGIDDVPEPVDEQTRNFVRQAWREFSDRDRFLIYRYF FT EINDTLKQKALAKVATIKEEIKSWSVAGCWNAMPMGVKWMIGVIALFSFGCVLVDFLHT FT LMSMRSWSPVDILGNVLGASGAFGVLAFTSEGGSYAGSGVNIEATKYRDKRIKPYSQGG FT DGSGANFTYNELESIEAIKKGQYLLSYSNTCGLSGVAAVFMYKDHSFLISTHEADWINY FT NKTCYMVGRDGTSREVSLAASGVKKVTRDGFIEPVCSIDILPTTPVGKASSQSVWYNFH FT KTNEGRKVGVIVPNNRKDMAQECTKVHFRRNKEKTDCFNYPGSKGGWSAHDLLHAKAPH FT GNGMCGRLLLSHGPAGNLLVVGLHVSGGGLNEKATSIFGGIDGSYKDTEDGKFYQQGDL FT DVHMKEFIEPEFITEMVDKIGRVDPSQQFRPSQGTSIIKSEIHDDLWRRAETCPTVLTR FT SDPRPEVPFDPYQAGIRKFVKEVGPLDFQDEDSTENIVLVDIAEELLSKRREAGGFELD FT TVLDTHAAINGVDGMEYAEPLVMGTSEGYPYVLERQPGDVGKFRYFSKNLYHWELNEEP FT KKELDELEESVARDDFDGKIITIACAKDEKTKLVKVYEKPKTRIFEILPYHYNILVRKY FT YLFFMQFIMKMHNILPCKVGLNPFSQDWDEMHAEHTRFDHHFNGDYSGFDTGTPRQLLL FT KFADLISDLAGDGRRNKTIRRNLMQLAVDRRILVLAELFHVRGGTPSGFALTVIINSMV FT NQFYLMWAWRKIMQRISPTMVTYRIMKSHCTFSVYGDDNVVSFSLAVRDMYNLCTIADE FT LKTIGVTLSDGKKTGVLIKWSKFDDLDFLKRRWELEPGHGFKCPLDKMAIEERLFWVRK FT SEDNMESLDDNCYSALMEAFHHGPEYFQDLRGKILDGYQSAGLEAPILLHYQEAKTIWF FT EQHKVGAESDFFAGVQNHLLPSIVGKDVVRTISTTIDWSSIRRYNEAFASGKYTRTKVF FT LDPLAKEIQWLKSKSGPHLSIPASLNKDTFQSIIEGINRVVPGEICVVDGRGDKSGLVV FT ALALAMDRAEISQAQGHNMLLALVVTNKEVEYGLQLFNVLAATSRPAVSLEPKFTTSPT FT ELVKGIVGVEVYKVATLVKQLPFGSVGPSLKGRMALFYSDGGFDYSHDKYHYTSQGWPA FT EIADLAERLGGFNSCLVQKYDKGAYIPFHSDDEPCYNLDESIVTVNLDGRATFIVRNKT FT TNKECRQELYHGSIIEMLPGCQKLCKHSVVVKDQGRVSLTFRRQRRTMKGAPL" FT mat_peptide 149..1693 FT /product="protease co-factor" FT mat_peptide 1694..3208 FT /product="RNA helicase" FT mat_peptide 3209..3286 FT /product="VPg" FT mat_peptide 3287..3988 FT /product="protease" FT mat_peptide 3989..6637 FT /product="RdRp" XX SQ Sequence 7572 BP; 2046 A; 1579 C; 1923 G; 2024 T; 0 other; atcaaagcgc actgaaccca agtttactga aaatttacat tcacatttac tgaatcttct 60 tttccgttca ccttcgttta cttgtttgca ttcaatcaat ctgcatcaac tccgagctgg 120 cgtactacat ctgttctatt ctgtgaggat gtcgtatctc accaaggacc ttgctgcttt 180 cattgaatcc gctatagcca ctggctattc atttgacaac gcctgcgaac tgtatcagcg 240 atttaagatc gttgaactga acgcaaaccc cgtttcacgc gctttctgcc gcacttataa 300 agagtgggtg gacgagcaat tcaccatccc cacaccagag gatatcgaca ttcttaccgt 360 agacactgtc gatcctctaa ccgctgccga gccaaaccat agcgaagcag aggatgtgga 420 taccgattca tgtgattctt gtgattcagc tgatggacca tctagtccta tcagcgtact 480 tcggtccccg cttgagggat tcgatgttga tattggtgag gctaacaagt ctcttggaat 540 tgacgtctca gcatacccgt gcctgccaaa gggtaaagag aattgcgatc ttaagaatat 600 tatggcaggt catctgttta gttcaccaat tttcccaatt tcggcgatca aacacgaaat 660 tctagctgag aaggatctta accggctcgc atcgttgttt gatgtggtta atactgtgac 720 ccattccatt ggactggagc aggaaggttt ttccctatcc tcgctgactg gagcaataaa 780 gagccgcata tccggagcca caggattagc ggcgtctatg gttgacattg tggcaaattt 840 atcatctgct tcttctctct tggagaaaat atttcagcgc attatcactg ccttcgacta 900 tattgctagc tcgattggta catttggtac ctttcttact ggtataaagg agaagatcat 960 tgaaaaatgc acggcattat gggagaagct tgcggagtgg ggtgatcact tctactacat 1020 catcccaact ttctgtgcag tattccttgt gtccatcacg tgtttcctca tcaataagtt 1080 tcttgctgcc gtggcaccaa cttactgctt cagcatgagc gtcatagtac acctcattgt 1140 tgtgtgctgc gctcttgttg gctgtaagga actcggagct gcactcctat cactcacaaa 1200 agccgggaag ctcaatttcc tgaacatgat ttatagcact ttcggggcag aagccggcga 1260 ggccaacatc actgttgatg acaaacagcc ttccacattt cacggagttg acggcgtgtt 1320 cgaggatgtg cccttaagtg agggagcgtc ttcaatgaca ggattctttg gggttcttgg 1380 cttgttaact ttctttacac ccaaagaact caaatttgat ttgtatgaga tgaccaagtg 1440 ggcacatggc ctcaagggtc ttgctgacgg atatgagaaa ttcaaagtgg ttgctgagaa 1500 gttggctttt tgggcatacg agaaagttgg tctcgctgcc acttgggatg cgccagctat 1560 tcaaagcatg attctcgtga caggcatcag atttcaggat tggtgcaaag aggtcgatct 1620 gctggctgtt gaaatgcaag gatctgccag tctacaggaa gatttatccc gtgctaggaa 1680 gctcaaggaa caaggactga agatccaaga ttatatggtc agaggggatt cttccatttc 1740 cttcatgatg agggagagac ttaaggcaac aatgggggtt atcaatgata ttgtcagcaa 1800 gtttgaaaag gccattgaca taggaggcac acgaatgtgt cctttcaccg tattgttctt 1860 tggagcacca ggtgttggta aatccaacac gatgggtccg ttcatgcatg agataatgga 1920 tagaaatggg gaatcgaaga taggacgcgt gtacccaagg aactctgggg atgagcattg 1980 gtcccattac atgcggcaaa ctgcactggt gtacgatgag tttgcacaaa gaaccccaac 2040 acctggtagg agcgatgaat tggagttaat cccgttggtc tcatgcaatc attaccctct 2100 tgtgggagca gctatagctg acaaaggttt atctttcaat tcaaagtaca tctttatgtg 2160 ctctaatcgt gccgatgttt ctgccggtgc gggattagct gatcctgatg cttttaggcg 2220 tagaagacac gtttgtgtgg aggtcttcaa gaatgacaat ctgcctttca gacctgatga 2280 gccatactac aatcagatgt tccaacttag gaaccctttg cgacccaagg acccattgac 2340 gtacattgac gaagcaggtc accagcagcc ctacccgagg atgacttatg gggaattgtg 2400 tctgtatgtt gcggagaaat ctgctgagca ctttgacaag gaggcccaat ctctgaaatt 2460 catgagaaaa gttcagggcc tacaagagca agaagaattt gtccaggaag gacctctcac 2520 agactttcat gggagcttga ttatctctcc aaaagccatt tctgagatct cgatgcccca 2580 tttccacaat accgacgaca accatcagat acatgggtgc accaaccaca aagtgttctg 2640 ttgttctctc ttcggaacga agtgtgatgt tgaacacaca gctgctgaga ttagctatgt 2700 caagatgata caagatgatg tgcacccaca tgcttattcc acgaacctgg caatcagcct 2760 ggcacagagt gatagaaccc tttgggatgt aaagggtttt aggaagatgg tcaagaggat 2820 caaggggtat ggaatcgacg atgtccccga acctgtcgat gagcagacgc ggaactttgt 2880 taggcaggcc tggagggaat tttctgatcg tgatagattt ctcatctata ggtattttga 2940 gatcaatgat acactcaagc aaaaagcgct ggcgaaagtg gcgaccatca aagaggagat 3000 caaatcctgg agcgtcgcgg gctgttggaa tgctatgccc atgggtgtca aatggatgat 3060 aggagttatt gccctgttct catttggatg tgtgctcgtt gatttcctac acacgctgat 3120 gtctatgcgc tcttggagcc ctgtggatat acttggcaat gtattaggtg catccggggc 3180 ttttggagtt ttggctttta catctgaggg tggttcatat gctggttctg gcgtcaacat 3240 tgaggccacg aaatacagag acaagagaat caagccctac tctcagggtg gagacggatc 3300 cggtgccaac ttcacctaca acgaattgga gtccatcgaa gccatcaaga agggacagta 3360 tctactgtcc tacagcaaca catgtggact tagtggggtg gcggctgttt tcatgtataa 3420 ggaccactcc ttcctcatat caactcatga ggctgactgg atcaactaca ataaaacctg 3480 ctatatggtg ggtagagatg gcacatccag agaggtgagt ctagcagcat ccggtgtgaa 3540 gaaagtgacc agggatggtt tcattgagcc cgtttgttcc attgatattc tacccaccac 3600 ccctgttggg aaggctagct cacaatccgt gtggtacaat ttccacaaga caaatgaggg 3660 aaggaaagtc ggagtgatcg ttcctaacaa caggaaagac atggcacaag aatgcacgaa 3720 ggttcatttc agaaggaaca aggagaaaac tgattgcttc aattaccccg ggagcaaagg 3780 cggttggtcg gcacatgatt tgttacatgc aaaagctccg catggaaatg ggatgtgtgg 3840 tagattgctg ttatcacatg gtccagctgg taatttgctc gtagtgggcc tacatgtaag 3900 tgggggagga ctgaatgaga aggccactag tatttttggt ggtattgatg ggtcgtacaa 3960 ggatactgaa gacggaaagt tttatcagca aggtgatttg gacgtgcaca tgaaggaatt 4020 cattgaacca gaattcatta ctgaaatggt cgacaaaatt ggtagggttg acccgtccca 4080 gcaattcagg ccctcgcaag gtacatcgat tatcaaaagt gaaattcatg atgatttatg 4140 gcgaagggcg gaaacctgcc caacagtcct gacacggtct gacccgagac cagaagtgcc 4200 ttttgaccca taccaggctg ggattcggaa atttgtcaag gaggtcggtc cattggactt 4260 tcaggatgaa gattccacgg agaacatagt tctggtggac attgcggagg agcttttgag 4320 caagagacga gaggctggtg gttttgaact ggacactgtg cttgatactc atgcagccat 4380 taacggtgtg gatggtatgg aatatgctga accattagtt atgggaacat ccgaaggtta 4440 cccttatgtg cttgaaaggc aacccggtga cgtcggtaag tttcgctact tcagcaagaa 4500 cctgtatcat tgggaactaa acgaggagcc aaagaaggaa ctggatgaat tggaggaatc 4560 agtggccaga gacgattttg acgggaaaat catcactatt gcatgtgcta aggatgagaa 4620 aaccaagttg gtcaaggtgt atgagaaacc caaaacgaga atttttgaga tcctgccgta 4680 tcattataac atcttggtga ggaagtatta tctcttcttc atgcagttca tcatgaaaat 4740 gcacaacatc ctaccatgta aagttgggtt aaatcctttc tctcaggatt gggatgagat 4800 gcacgccgag cacactagat ttgatcatca tttcaatggt gattattcag gctttgatac 4860 agggactccg agacaattac tcctcaaatt tgcggaccta atatccgatt tggccggtga 4920 tggaaggagg aataagacca taaggagaaa tctaatgcag ctggcagttg acaggaggat 4980 cctcgttcta gccgagttgt ttcatgtgag agggggcacc ccgtcaggtt ttgcactcac 5040 agtcatcatc aactcgatgg tgaatcaatt ttacctgatg tgggcttgga gaaagatcat 5100 gcaaagaatc agtcccacta tggttactta tagaatcatg aaatcgcact gtacattttc 5160 cgtttatgga gatgataatg tggtttcttt cagtttggct gtgcgtgata tgtataatct 5220 gtgcaccatt gcagatgagc ttaagacaat aggggttacc ctttccgatg ggaagaagac 5280 tggagtgttg atcaaatggt ctaaatttga cgatttagac tttctcaaga gaaggtggga 5340 attggagcca ggtcatgggt ttaaatgtcc attggacaag atggctattg aggagaggct 5400 gttttgggtg aggaaatctg aagataacat ggaatccctc gatgataact gttattcggc 5460 tctgatggag gcatttcatc atgggccgga gtactttcaa gatctcaggg gaaaaattct 5520 tgatggctac caatcagcag ggttagaggc tccaattctg ttacattacc aggaggccaa 5580 aactatctgg tttgagcagc acaaagttgg agctgaatcg gatttctttg ctggggtcca 5640 gaaccacctg ctccctagta tagtcggtaa ggacgttgtg agaacaatca gcacaaccat 5700 cgactggagt tcaatccggc gatacaatga agcatttgcc agtggaaagt acactagaac 5760 aaaagttttc ctagatccgc tggcgaaaga aattcaatgg ctcaagtcaa aaagtgggcc 5820 tcatttgagc ataccggcat ccctcaacaa agacactttc caatccatta ttgagggaat 5880 taatcgcgtg gtcccaggag aaatctgcgt ggtcgatggg cgtggagata aatcgggtct 5940 ggtggttgct ttggctctgg cgatggatag agccgaaatt agtcaggccc aaggacacaa 6000 catgttgcta gctctagtcg ttaccaacaa ggaagtggag tatggtcttc aactcttcaa 6060 tgtgttagca gccacaagta gaccagctgt ctctctggaa cctaaattca caacctcacc 6120 tactgagctc gtcaaaggaa ttgttggggt tgaagtgtac aaggtggcaa cgctggtgaa 6180 gcagcttcca tttggaagtg taggaccaag tttaaaggga agaatggcac tattttactc 6240 cgatgggggt ttcgactatt cacatgacaa gtatcattac acctcccagg gctggcctgc 6300 cgagattgct gatctggccg agagacttgg cggctttaat tcctgcttag tgcagaagta 6360 tgataaagga gcgtacattc cgttccactc tgacgatgaa ccctgctaca acttggatga 6420 atctattgtc accgtcaacc tggatggtcg agccacattc atagtgagaa acaagaccac 6480 taacaaagag tgcaggcagg aattgtacca tggctcaata attgagatgt tgcccggttg 6540 tcagaaactg tgcaagcatt ctgttgtggt gaaagaccag gggcgcgtga gtctcacatt 6600 taggaggcag cgaagaacca tgaaaggggc gcccctgtga ggtaccgaat catagttttg 6660 gaccaaacta taaatggtag ccggtctccc ctgccttaaa ggggttcata aggataatgt 6720 ctggtggatt ccctgttctt tgttgaatgg gccacttggt gtacgtcagg cttcaatgat 6780 ctggcggtcc tatcacattc ttggaattaa cctagttaag gagaaatccg tgtgtagcct 6840 tgaatagacg aggcaaatag ctctgcacgc tgctattaaa ataaggatcg tgtgcccagt 6900 cccggttaga aggacaccca catttcatag gactagtatc aattgggagg aagggtaagg 6960 agtattcatc cgtgtaacgc tctgtgaact gaatccccat actgagaaag tctgaacttt 7020 ttgtggtaag tttgttggaa ctttaaacca atagcccaac cccggttaga agggtcgagt 7080 ggttctacgt tagtgaacca gaacctcggg agagttttcc taggatccag accgaattct 7140 ggcagcttgc atggcaagat acactgtaga gtggaggctt gataaccctc ctgcagtagg 7200 caaggcaatg gcttttctgt cggcggtagc gtcccggccc ttgtttatgt tcgcccgatc 7260 agtgaaaggc cgattcgtgt atcgttaaac atgaaatcgg gagatttatc ctaggatcca 7320 gaccgaattc tggcagcttg catggcaaga tgataccgag tatcattaaa ctcgggaact 7380 gggaagtcgg tccagtgtaa ataccgacca ttgttggcag caattttctg tcaagtatgg 7440 tacgcttttg tgccacaaag tgagcacttg ctcacaaaaa gattttactt agttgtaatg 7500 tcactaattt tcttgcgggg gaatagaccg ttaaaggtag attcctctgt attgttaacc 7560 ttagttagat gt 7572 //