ID   FN669169; SV 1; linear; genomic RNA; STD; VRL; 2117 BP.
XX
AC   FN669169;
XX
DT   16-MAY-2010 (Rel. 104, Created)
DT   16-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Lilac leaf chlorosis virus segment RNA-3, host Syringa vulgaris, genomic
DE   RNA
XX
KW   .
XX
OS   Lilac leaf chlorosis virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
XX
RN   [1]
RP   1-2117
RA   Varga A.;
RT   ;
RL   Submitted (19-FEB-2010) to the INSDC.
RL   Varga A., Canadian Food Inspection Agency, Sidney Laboratory, Centre for
RL   Plant Health, 8801 East Saanich Road, Sidney,, British Columbia, V8L 1H3,
RL   CANADA.
XX
RN   [2]
RX   DOI; 10.1007/s00705-010-0673-5 .
RA   James D., Varga A., Leippi L., Godkin S., Masters C.;
RT   "Sequence analysis of RNA 2 and RNA 3 of lilac leaf chlorosis virus: a
RT   putative new member of the genus Ilarvirus";
RL   Arch. Virol. 0:0(2010).
XX
DR   MD5; 0635494a4e7f83e26a5641dcbaddeb26.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2117
FT                   /organism="Lilac leaf chlorosis virus"
FT                   /segment="RNA-3"
FT                   /host="Syringa vulgaris"
FT                   /mol_type="genomic RNA"
FT                   /note="Viruses; ssRNA positive-strand viruses, no DNA
FT                   stage; Bromoviridae; Ilarvirus; Lilac leaf chlorosis virus"
FT                   /db_xref="taxon:722755"
FT   5'UTR           1..326
FT   CDS             327..1160
FT                   /transl_table=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:D6CHU2"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:D6CHU2"
FT                   /protein_id="CBJ94501.1"
FT                   /translation="MALSDNHTSDFTIVESSMQELQQVTEELHTLLLSKEMQNLPTKGR
FT                   HVLHLQNLPKSNVLKLESKEQRSFLAKTNDKLKKRVYRDVGRMFFVYVPIIQKTSSGLL
FT                   TLKLQNSDTGEVSDIATDIPANEAFVLMDRWGRSLVDNAELNLLYSVYCPDLRPQARVG
FT                   EMVCFWDESMSRQQVYSERGNPIMFPIEETKPVQYLKDKKLLMSMVRARIAAGAEGESD
FT                   LGPSPLSVERLGDKRKVLTIKPKESGSTSGLLVEEKKNFQKEKVPVRTENDFVQG"
FT   misc_feature    1161..1258
FT                   /note="intergenic spacer, IGS"
FT   CDS             1259..1924
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:D6CHU3"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:D6CHU3"
FT                   /protein_id="CBJ94502.1"
FT                   /translation="MVCKLCGHTHAGGCVKCKKCFPTGAAPASERARQRARNNPNRVVT
FT                   SRVGSSSKGANAPTSWTVNGPNTEPIVPRGTVLRSYTDVVASAPGKFLTIDFSERFPNL
FT                   LGHKVRILSILLRVNAFHSNGWVGLVEDYDVSSPTGPDPMRRKGFMANQARGWQWMAPS
FT                   GLEYDDFAKKHRIVLEFKTEFAAEQKVLTRDLYVVTTELPKVTIPGDILFVDEDLLDV"
FT   3'UTR           1925..2117
XX
SQ   Sequence 2117 BP; 557 A; 445 C; 561 G; 554 T; 0 other;
     ccaaaaccgt ccgctgttgt agagatttat ctctgcgtaa ttcacgggtc taggttgaag        60
     tcctaggatt cgagtgagtg cattgggaag tcaattgctt ttggcgtccg ctgttgtaag       120
     attctcgtca gagtttcttg cgtaattcac ggtcaattgt gagaagacac tttgcatttc       180
     ttccgaggct gtggtggccg aagttgaggg atctcgaatt cgtcgtaggg aggggcagtg       240
     aggaatttac ttacgcttag cttgtactaa gtacggtttt ccgacctcga atccacgcgt       300
     ttaaggatac actgaaagaa cctctgatgg ctctatctga taaccatacc tccgatttca       360
     cgatcgttga gagctcgatg caagagcttc aacaagtgac cgaggagttg cacacattac       420
     tgctctcgaa agagatgcag aatctgccca caaaggggcg tcatgttctg catttgcaga       480
     acctcccgaa atccaatgtg cttaaacttg agtctaagga acagagaagt tttcttgcga       540
     aaacgaatga taaactgaag aagagagttt atcgagacgt gggacgaatg ttctttgtct       600
     atgttccgat catccagaag acgagcagcg gtctgttgac tttgaagctg cagaactccg       660
     acacaggaga agtttctgac attgccaccg acattccggc gaatgaagcc ttcgtgctta       720
     tggataggtg gggcaggtcc ttagtagaca acgccgaact gaacttgttg tacagtgtct       780
     actgtccaga tctccgacct caagccaggg ttggggaaat ggtgtgcttt tgggacgaat       840
     caatgtctcg acagcaggtg tattccgagc gaggaaaccc gattatgttt ccgattgagg       900
     aaacgaaacc ggtgcagtac ctgaaggaca agaagctgtt gatgtctatg gtacgagccc       960
     gcattgcggc aggggctgaa ggagagtccg atttaggacc gtcacctctt tcagtcgaac      1020
     gacttggcga caagcgtaag gttttaacga taaaaccgaa ggagagcgga tcaacttctg      1080
     gtttgttggt cgaagaaaag aaaaattttc aaaaggaaaa ggttccggtg agaaccgaaa      1140
     atgattttgt acagggttaa agaagatccg attaggatcg atgcggcttt ccgcaggcgt      1200
     ttatttttcc cttgtattta ttttgtctta cttttgttag tttcttttcg attacacgat      1260
     ggtttgcaaa ctttgcggtc acacacatgc tgggggctgt gtgaagtgta agaaatgttt      1320
     tccgactggg gcagcaccgg cctcagaaag agcccgacag agagctcgaa acaatccgaa      1380
     tagggttgtc acctcccgag tagggagctc ttcgaaagga gcgaatgctc cgacttcttg      1440
     gaccgtgaat ggtccgaaca ctgaaccgat cgtcccgaga gggactgttc ttaggagcta      1500
     caccgatgtt gtagcatccg caccaggaaa attcttaacc atagattttt ccgaacgttt      1560
     cccgaatctt ttgggacaca aggtgaggat tctttcgatc ctactcagag tgaacgcgtt      1620
     tcactcgaat gggtgggtag gtttagtgga ggactacgat gttagtagtc cgactggtcc      1680
     tgatcctatg cgacgaaagg gcttcatggc gaatcaagcc agaggctggc aatggatggc      1740
     cccttcagga cttgagtacg acgactttgc gaaaaagcat cgtatagtac tcgaattcaa      1800
     aaccgaattt gccgctgagc aaaaggtttt aacccgggat ttgtacgtgg taacaacgga      1860
     attaccgaaa gttactattc cgggtgacat cttgtttgtc gatgaagact tacttgatgt      1920
     ctaggtatga attgacctca taccgaagta ccgccgaatg gcgatggacc cttccccgaa      1980
     tgggaagaaa gggtcgtaca acttagaaag agcgttccct ctttcgaagg tcaagttgtg      2040
     caacagagac gaataagatc tctgattcct atatccgtga aggatataga tgctccgtta      2100
     ggatcccggg aattcgg                                                     2117
//