ID   FN669138; SV 2; linear; genomic DNA; STD; VRL; 2199 BP.
XX
AC   FN669138;
XX
DT   23-FEB-2010 (Rel. 103, Created)
DT   02-JAN-2014 (Rel. 119, Last updated, Version 2)
XX
DE   Cherry necrotic rusty mottle virus ORF2, ORF2a, ORF3, ORF4, CP gene and
DE   ORF5a, isolate JK10
XX
KW   .
XX
OS   Cherry necrotic rusty mottle virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae;
OC   Robigovirus.
XX
RN   [1]
RC   revised by [3]
RA   Awasthi P.;
RT   ;
RL   Submitted (18-FEB-2010) to the INSDC.
RL   Awasthi P., Technology (CSIR), Floriculture Division, Institute of
RL   Himalayan Bioresource, P.O. Box#6, Palampur, Himachal Pradesh 176061,
RL   INDIA.
XX
RN   [2]
RA   Awasthi P., Noorani M.S., Hallan V., Zaidi A.A.;
RT   "Molecular characterization of Cherry Necrotic Rusty Mottle Virus fron
RT   Jammu and Kashmir, India.";
RL   Unpublished.
XX
RN   [3]
RP   1-2199
RA   Awasthi P.;
RT   ;
RL   Submitted (18-DEC-2013) to the INSDC.
RL   Awasthi P., Technology (CSIR), Floriculture Division, Institute of
RL   Himalayan Bioresource, P.O. Box#6, Palampur, Himachal Pradesh 176061,
RL   INDIA.
XX
DR   MD5; f521f3a099dd51ef5ebc5015b329a8d6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2199
FT                   /organism="Cherry necrotic rusty mottle virus"
FT                   /host="Prunus avium"
FT                   /isolate="JK10"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Jammu and Kashmir"
FT                   /isolation_source="host leaf"
FT                   /collected_by="Prachi Awasthi"
FT                   /collection_date="18-May-2009"
FT                   /identified_by="Prachi Awasthi"
FT                   /db_xref="taxon:129143"
FT   CDS             5..673
FT                   /product="TGB1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:D3VN05"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:D3VN05"
FT                   /protein_id="CBJ94492.1"
FT                   /translation="METIYSRLLDANFSRTSFPISFPVVVHGVPGCGKSTFIKSLLDCE
FT                   EFSAQSYGVVRPTNLVGRGVEKALQPLQPGFNVLDEYLSGPSYEGFDLLLSDPYQNFRK
FT                   PLTAHFINSNTYRFGVSVCQFLNKLGFEISSCKEEDTELIFGKVFGGKICGEIICFETE
FT                   VEEILRKHSAKFHHPCNLRGAEFDHVTFITAHQDLQEIVGPDLYVSLTRATKSLAILSP
FT                   "
FT   CDS             33..392
FT                   /product="hypothetical protein"
FT                   /note="ORF2a"
FT                   /db_xref="GOA:D3VN06"
FT                   /db_xref="UniProtKB/TrEMBL:D3VN06"
FT                   /protein_id="CBJ94493.1"
FT                   /translation="MLTFLELAFPLAFLLLFTVSLVAENPLSSSLYLIVRSSVLSLTVL
FT                   LDPQILLGVVLKKLYNLYNPDSTFLTSICLDLLTRVLICSFPTLIRISANHSLLISLIA
FT                   ILIGLVFRFVNSLIN"
FT   CDS             674..1021
FT                   /product="TGB2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:D3VN07"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:D3VN07"
FT                   /protein_id="CBJ94494.1"
FT                   /translation="MSLRPPTDYSRPLLCAVIGVSLAVFCATFKASYLPSVGDNLHSLP
FT                   HGGSYRDGTKAINHNGLNCVSGASVDSQFLPSKFVAFSFVCIISLLIYACSRSTHRPIS
FT                   VQHYCVHHRPI"
FT   CDS             951..1154
FT                   /product="TGB3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:D3VN08"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:D3VN08"
FT                   /protein_id="CBJ94495.1"
FT                   /translation="MRAVDLLIGLLVFSITAYTIGLFNFSGRSSCTVIITGERAVVTGC
FT                   EITPELSNLLLHLKPHSHSLGF"
FT   CDS             1209..2009
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:D2U4S2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:D2U4S2"
FT                   /protein_id="CBJ94496.2"
FT                   /translation="MADEYELNDDGTFKLDAANNKIPKKKATGPPPPPPRNEESPSRKS
FT                   DIDILRSRRRRVNFDPKNPTSSPSREFINNIQEKDPTTLNIAADDTVKAIAADWVEHLK
FT                   VPESEVFNCIFDVVWYCYHNSSSDKTKFVGRAKCNVELEELASTIRSYCSLRSFCSKYA
FT                   PVIWDFAISNDIPPANWQRRKVIEGAKFAAFDFFEAVTSAAALQPVAGLVRNPTDKEMI
FT                   AGASLKEISLMRDEIRRGTSSTLMTEVTGGRTGQVQPIKRIGDE"
FT   CDS             1237..1704
FT                   /product="hypothetical protein"
FT                   /note="ORF5a"
FT                   /db_xref="UniProtKB/TrEMBL:D3VN10"
FT                   /protein_id="CBJ94497.2"
FT                   /translation="MEHSSSMLQITRSRRRRRLGRPLHLPEMKKALQERAILTSSGQEE
FT                   GGSTLIPKIPPQVLAESLSTTFKRRTLQPSTLQLMTQLRQLQPIGLSTSRCLSLKYSIA
FT                   FLMSFGTATTTVQVIKQNSLVEPSAMLNLRNWRALLGATVLYVAFAQNMRQ"
XX
SQ   Sequence 2199 BP; 598 A; 434 C; 486 G; 681 T; 0 other;
     gttgatggaa actatttaca gtaggttgtt ggatgctaac ttttctagaa ctagctttcc        60
     cattagcttt cctgttgttg ttcacggtgt ccctggttgc ggaaaatcca ctttcatcaa       120
     gtctttactt gattgtgagg agttcagtgc tcagtcttac ggtgttgtta gacccacaaa       180
     tcttgttggg cgtggtgttg aaaaagcttt acaacctcta caacccggat tcaacgttct       240
     tgacgagtat ttgtctggac cttcttacga gggttttgat ttgctccttt ccgaccctta       300
     tcagaatttc cgcaaaccac tcactgctca tttcattaat agcaatactt ataggtttgg       360
     tgtttcggtt tgtcaattcc ttaataaatt agggtttgaa attagttctt gcaaggaaga       420
     agatactgag ctcatttttg gcaaagtttt tggtggtaag atttgcgggg aaataatttg       480
     cttcgagact gaggttgaag aaatactgag gaagcattca gccaagttcc atcacccttg       540
     caatctgaga ggggctgaat ttgaccacgt cacctttatc acagctcacc aggacttaca       600
     ggaaatagtt ggacccgatc tttatgtttc cctcactagg gccacaaaaa gtttggccat       660
     tctaagtcca taaatgagtt taagaccacc cactgattat tctcgaccac tgttgtgcgc       720
     tgttatcggt gtgtcattgg ccgtattttg tgctactttt aaagctagtt atttaccatc       780
     agttggtgat aatttgcatt ctttaccaca tggaggttct taccgggatg gtacaaaggc       840
     aataaatcac aatggtttga attgcgtcag tggggcaagt gttgattctc agtttcttcc       900
     aagcaagttt gtcgcttttt cttttgtgtg cataatcagt ttgcttatat atgcgtgcag       960
     tagatctact cataggccta ttagtgttca gcattactgc gtacaccata ggcctattta      1020
     actttagtgg tcgtagctct tgtacagtta taattacggg ggaaagagca gttgtgactg      1080
     gttgtgagat aactcctgaa ttaagcaatc ttcttcttca cttgaaacct cattcacata      1140
     gcttaggttt ttaggcactc caatttgaat atcatttgag tgtgtgtgag gtttcaagtt      1200
     tatttaagat ggcagatgag tatgagctaa acgacgatgg aacattcaag ctcgatgctg      1260
     caaataacaa gatcccgaag aagaaggcga ctgggccgcc ccctccacct ccccgaaatg      1320
     aagaaagccc ttcaagaaag agcgatattg acatcctcag gtcaagaaga aggcgggtca      1380
     actttgatcc caaaaatccc acctcaagtc ctagcagaga gtttatcaac aacattcaag      1440
     agaaggaccc tacaaccctc aacattgcag ctgatgacac agttaaggca attgcagccg      1500
     attgggttga gcacctcaag gtgcctgagt ctgaagtatt caattgcatt tttgatgtcg      1560
     tttggtactg ctaccacaac agttcaagtg ataaaacaaa attcgttggt agagccaagt      1620
     gcaatgttga acttgaggaa ttggcgagca ctattaggag ctactgttct ttacgtagct      1680
     tttgctcaaa atatgcgcca gtgatttggg attttgcaat tagcaatgat ataccccctg      1740
     ctaattggca aaggaggaag gttattgagg gggcgaagtt tgcagctttt gatttctttg      1800
     aagcagtaac cagcgcagca gctctgcaac ctgttgctgg acttgttagg aatccaacag      1860
     acaaagagat gattgccggt gcatctctta aagaaataag tttaatgagg gatgaaattc      1920
     gcagggggac gagttcaaca ctaatgactg aagtgactgg cggcagaact ggccaagttc      1980
     aacccatcaa gcgtattggt gatgaatgag atcctctgca aacccaatca tcatgattgg      2040
     cccgttttac aacacggggc gaagctaaag ttgtattatc ctgcagtttt aattactttt      2100
     ctgcttttcc aaattttaaa taaatttaaa gagattcatg gcttaacctg aatctggcta      2160
     tagggtttta atatattttc cttcagtttt ctacgagag                             2199
//