ID FN668377; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC FN668377; XX DT 17-FEB-2010 (Rel. 103, Created) DT 17-FEB-2010 (Rel. 103, Last updated, Version 1) XX DE East African cassava mosaic virus (Uganda variant) segment A, isolate DE EACMV-UG [Ca055] XX KW complete viral segment, complete genome. XX OS East African cassava mosaic virus (Uganda variant) OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2799 RA Winter S.; RT ; RL Submitted (13-FEB-2010) to the INSDC. RL Winter S., Plant Virus Department, DSMZ, Messeweg 11/12, 38104, GERMANY. XX RN [2] RA Naseem S., Winter S.; RT "African cassava mosaic virus (ACMV) and East African cassava mosaic virus RT (EACMV-UG) in single and mixed infected cassava (Manihot esculenta RT Crantz)"; RL Unpublished. XX DR MD5; 4f8716c15e28310a9a596e30d9ff96ae. XX FH Key Location/Qualifiers FH FT source 1..2799 FT /organism="East African cassava mosaic virus (Uganda FT variant)" FT /segment="A" FT /host="Manihot esculenta" FT /strain="EACMV-UG" FT /isolate="EACMV-UG [Ca055]" FT /mol_type="genomic DNA" FT /country="Kenya:Kagamega" FT /collected_by="Were HK, Winter S" FT /collection_date="2000" FT /identified_by="Were HK, Winter S" FT /db_xref="taxon:375009" FT CDS 172..528 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:A4CYS1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4CYS1" FT /protein_id="CBJ57252.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT CDS 332..1105 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A4CYS8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A4CYS8" FT /protein_id="CBJ57253.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102..1506) FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:D3HUQ5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HUQ5" FT /protein_id="CBJ57254.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKIWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNIY" FT CDS complement(1247..1654) FT /gene="AC2" FT /product="TraP" FT /db_xref="GOA:D3HUQ6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HUQ6" FT /protein_id="CBJ57255.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAIRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQNMDDLTASDWSFLKSI" FT CDS complement(1563..2642) FT /gene="AC1" FT /product="replication protein" FT /db_xref="GOA:D3HUQ7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HUQ7" FT /protein_id="CBJ57256.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDVEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGHQT" FT CDS complement(2252..2485) FT /gene="AC4" FT /product="transcriptional regulator AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HUQ8" FT /protein_id="CBJ57257.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHIFIRTFRELNHR FT PMSKLTLKREGNFLTLDFSKSMPEVQGERANI" XX SQ Sequence 2799 BP; 729 A; 550 C; 729 G; 791 T; 0 other; accggatggc cgcgcccgaa aaagcaggtt gaccccacaa tgaccgcgcc cgtgaaagaa 60 agtggtccct gcgcacttgt tttgatcggc cagtcatatt cgcgcgtgaa agtctagata 120 tttgttgttt gtctttatag acttcgtcgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa 240 tacctgttac atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg 300 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaggag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gaatgtatcg aagcccagat gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggcctgg gctgacgcac agggtcggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ctggatggat gaaaatatta agaagcagaa 720 tcacactaat aatgtgatgt tttacctgct tagggataga aggccgtatg gcaatgcgcc 780 ccaagacttt gggcagatat ttaacatgtt tgataacgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga atcatcacgt 960 gacatataat catcaggagg cagggaagta tgagaatcac acagagaatg cgttgttatt 1020 gtatatggca tgtacacatg cctcgaatcc tgtgtatgct acgctgaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaat gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1200 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccatattttg aagttgagaa aacacttgtg 1320 aatccccaat gccttccgaa ggttgtggtt gaaccgtatc tggagtgtga tgatgtcgtg 1380 gttcatgttc cctggcctct tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat 1440 gtcccaggta aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1500 atccatggtt tatgcagtcg atatggagat agaacgagca gccgcattcg aggtctaccc 1560 gcctacgtct gatggccctg gtcttcgctg tgcggtgttg gactttgatg ggcactagag 1620 aacaatggct cgtggagggt gatgaaggtg gcattcttta aagcccaggc tttaagggat 1680 tggttctttt cctcgtccag aaactcttta tatgatgatg tgggtcctgg attgcagagg 1740 aagatagtgg gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc 1800 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg gtcgacgtca 1860 tcaatgacgt tgtaccatgc gtcgtttgaa tataccttgg gagacagatc caggtgtcca 1920 caaagataat tatggggtcc cagtgaacga gcccacatgg ttttgccggt tcggctatca 1980 ccttctagaa caatactgat cggtctccat ggccgcgcag cgggactgca tatattttcg 2040 gatacccata cctctacgtc ctctgggact tgtgtaaaag aggatgataa gaacggacta 2100 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat gttatggaac 2160 tgtaaaaaaa aggactttgg atctttttct ttaataattt gaagagcttc ggatttagac 2220 gaagcattca acgcgtctgc atatacctga gctaaatgtt ggccctctcc ccttgcactt 2280 ctggcatcga cttggaaaag tccagcgtca agaaattccc ctcccttttc aatgtaagct 2340 ttgacatcgg acgatgattt agctccctga atgttcggat gaaaatgtgt tgatcgggat 2400 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc gaattggatg 2460 agaacatgga gatgaggcac cccatcctga tgtagttctc tgcaaaccct aatgaatttg 2520 atattcgtcg ggtacgaaag ggcttgtaat tgggaaaggg cctcttcttt cgttaatgag 2580 catcggggat aggttatgaa ataatttttg gcatttattt gaaaacgacc ggctcttggc 2640 atattggctg tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg 2700 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact tccattcaaa 2760 ttttgaattc cgaatattgg cggccatccg attaatatt 2799 //