ID FN667966; SV 1; linear; genomic RNA; STD; VRL; 2593 BP. XX AC FN667966; XX DT 26-AUG-2010 (Rel. 105, Created) DT 26-AUG-2010 (Rel. 105, Last updated, Version 1) XX DE Alfalfa mosaic virus RNA2 segment complete sequence, genomic RNA XX KW complete genome. XX OS Alfalfa mosaic virus OC Viruses; Riboviria; Bromoviridae; Alfamovirus. XX RN [1] RP 1-2593 RA Parrella G.; RT ; RL Submitted (12-FEB-2010) to the INSDC. RL Parrella G., CNR- National Research Council, Istituto per la Protezione RL delle Piante, Via Universita 133 - Portici (NA), 80055, ITALY. XX RN [2] RX DOI; 10.1094/PDIS-94-7-0924A. RX AGRICOLA; IND44392344. RA Parrella G., Acanfora N., Bellardi M.G.; RT "First Record and Complete Nucleotide Sequence of Alfalfa mosaic virus from RT Lavandula stoechas in Italy"; RL Plant Dis. 94(7):924-924(2010). XX DR MD5; 279b926a0b938774f1d6782f6d657b73. DR RFAM; RF00252; Alfamo_CPB. XX FH Key Location/Qualifiers FH FT source 1..2593 FT /organism="Alfalfa mosaic virus" FT /segment="RNA2" FT /host="Lavandula stoechas" FT /isolate="Lst" FT /mol_type="genomic RNA" FT /country="Italy:Liguria (Savona province)" FT /db_xref="taxon:12321" FT 5'UTR 1..54 FT CDS 55..2427 FT /gene="2a" FT /product="89.7 kDa protein" FT /function="RNA-dependent RNA polymerase" FT /db_xref="GOA:E0WEX6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E0WEX6" FT /protein_id="CBJ56556.1" FT /translation="MFTLLRCLGFGVSEPTDTSSSEYVPKNSVEEISNEVTELDSVDPS FT FQCYERILVSLMLVRKMTQAAEDFHKSFGGELDSPCCRVYRLYRHFVNEDDAPAWAIPN FT VVNEDSYDEYAYLQEELDAINNSFELLNEERELSEITGRLDALRFFPVSKTEALPVADV FT QEVKFISENIPVIDDLYYYSDENFPSELPSPLLDELGKLPEDLGPLNEIEDIKPVAASI FT TLLSEFEASDNAKPLDIVEIIPDVSLTKPYEAVISGNDWMTLGRMIPTAPIPTIRDVFF FT SGLSRHGSPEVIQNALDEFLPLHHSIDDKYFQEWVETSDKSLDVDPCRIDLSVFNNWQS FT SESCYEPRFKTGALSTRKGTQTEALLAIKKRNMNVPNLGQIYDVNSVANSVVNKFLTTV FT IDPDKLCMFPDFISEGEVSYFQDYIVGKNPDPELYSDPLGIRSIDSYKHMIKSVLKPVE FT DNSLHLERPMPATITYHDKDIVMSSSPIFLAAAARLMLILRDKITIPSGKFHQLFSIDA FT EAFDASSHFKEIDFSKFDKSQNELHHLIQERLLKYLGIPNEFLTLWFNAHRKSRISDSK FT NGVFFNVDFQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEEL FT PRDQEFLFTTLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK FT VNADIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASK FT TLCKECLFNEKHESNVKIKPRRVKKSHSDARSRARRA" FT 3'UTR 2428..2593 XX SQ Sequence 2593 BP; 739 A; 525 C; 543 G; 786 T; 0 other; gtttttatct tttcgcgatt gaaaagataa gtttttcagt ttaatctttt caatatgttc 60 actcttttga gatgtcttgg attcggtgtc agtgaaccta ctgacacttc ctcatcagag 120 tatgttccca agaattccgt tgaagagatt tccaacgagg ttactgaact tgattcagta 180 gatccatcat tccaatgtta cgaacgtatt ctcgtatcat tgatgctcgt aagaaagatg 240 actcaagctg ccgaggactt ccacaaatca tttgggggag aactcgatag cccttgttgt 300 agggtttacc gtctttatag acatttcgtt aatgaagacg atgcacccgc ttgggccata 360 ccgaacgtcg tgaatgagga ttcttacgac gaatatgcct acctccaaga ggagttagat 420 gccattaata actcttttga gttgctaaat gaagagcgtg agttatcgga aattacgggc 480 aggctcgatg ctttaagatt ttttcctgtt tcaaaaacag aagcgctacc agtggcggat 540 gtccaagagg tcaaattcat ttctgagaac ataccagtta ttgatgacct ttattattac 600 tctgacgaga actttccgtc tgaattgccc tcaccattac tggatgagtt ggggaagtta 660 ccggaggatc ttggacctct gaatgaaatt gaagacatta agccggtggc ggcctcaatc 720 acattgctat ctgagtttga agcctcagat aatgctaagc cactcgacat agtcgaaatt 780 attccagacg taagtctgac gaaaccttat gaagccgtca tatcaggtaa tgattggatg 840 acgttgggga gaatgatacc tacagctccc attcctacca taagggatgt cttcttctct 900 ggcctttctc ggcacggatc gccggaagtg atccagaatg ctcttgatga atttcttccg 960 ctccatcatt caattgatga taagtatttt caagaatggg ttgaaacttc agataaatct 1020 ctcgatgtcg atccatgtcg aatcgatctg agtgttttca acaactggca gtcttcggaa 1080 agctgctatg aacctcggtt taaaaccggt gcattatcca cacgtaaggg cactcaaact 1140 gaagccctat tagcaataaa gaaacgtaat atgaatgtgc ctaacctggg gcagatttat 1200 gacgtgaatt ctgttgctaa ttccgtggtt aataagttct taacaactgt tatagatcct 1260 gataagttgt gcatgtttcc agattttata tctgagggtg aagtttcata tttccaggac 1320 tatatagttg ggaagaatcc cgaccctgaa ttatattcag accctctagg tattcgttcc 1380 atcgatagct ataaacacat gattaaatcc gtgttaaagc ccgttgaaga taattctcta 1440 cacctagaac ggccgatgcc agcaaccata acataccacg ataaagatat cgtgatgtcg 1500 tcttcaccaa tttttttggc tgctgctgcc cgcttgatgt taatcttaag agataagata 1560 actataccaa gcggaaaatt ccatcaattg ttttccatcg atgctgaagc ctttgatgca 1620 agttctcatt ttaaagagat agacttttct aagtttgaca aaagtcaaaa tgagttgcat 1680 cacttgatcc aagaaaggct tctgaaatac ttaggtatac ccaacgaatt tctaacctta 1740 tggtttaatg cgcatagaaa atcccgaatt tcagattcga agaatggcgt tttctttaac 1800 gtcgatttcc aacgtcgtac tggagatgcg ctcacatact tgggaaacac gatagtgacg 1860 ctagcttgtc tgtgtcatgt gtataacttg atggacccaa atgtgaaatt cgttgtcgct 1920 tccggtgatg attcattgat aggtactgtg gaggaattgc caagagatca agagtttctt 1980 ttcacgactc tttttaatct tgaagcaaaa tttcctcata accagccttt catatgcagt 2040 aagtttttaa ttactatgcc cactttgagt ggaagcaaag ttgtactgcc ggtaccgaat 2100 ccactgaaac ttctcatacg cttgggttcg aagaaagtca atgccgatat attcgatgaa 2160 tggtatcaat cctggattga tacaattggt gtttttaatg atcaccatgt tatccgatgc 2220 gttgccgcga tgacagcaca caggtatctt agaagaccga gtttgtacct agaagctgct 2280 ttagaatccc taggtaagat cttcgctagt aagaccttgt gtaaggaatg cctctttaat 2340 gagaagcacg agtctaatgt gaaaattaag cctcgtagag tgaaaaaatc ccactcggat 2400 gccaggtcaa gggcacgccg agcttgatgt tttcttgaca taagtcaaat tgccaacctc 2460 cactgggtgg gtcaaggttg aggtatagaa tcctattcgc tcctgatagg agaaattcta 2520 tattgcttat atatgtgctt acgcacatat ataaatgctc atgcaaaact gcatgaatgc 2580 ccctaaggga tgc 2593 //