Dbfetch
ID FN645926; SV 1; circular; genomic DNA; STD; VRL; 2761 BP. XX AC FN645926; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Croton yellow vein mosaic virus segment A, complete sequence, clone DE Ku-RCA-AI-F XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2761 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; e5a42b1b6f9bc0328e1ef7290ec3bb3f. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Croton yellow vein mosaic virus" FT /segment="A" FT /host="Acalypha sp." FT /mol_type="genomic DNA" FT /country="India:Punjab" FT /collection_date="Sep-2007" FT /clone="Ku-RCA-AI-F" FT /db_xref="taxon:207697" FT CDS 146..502 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HIF7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIF7" FT /protein_id="CBJ17709.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP FT EAQDVQDVQKPRCP" FT CDS complement(297..614) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIF8" FT /protein_id="CBJ17710.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRDIWASV FT HPVHPGLPVHGSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLRHN FT F" FT CDS 306..1076 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8B8N7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8B8N7" FT /protein_id="CBJ17712.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT CDS complement(741..1145) FT /gene="AC5a" FT /product="AC5a protein" FT /db_xref="GOA:D3HIP9" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D3HIP9" FT /protein_id="CBJ17711.1" FT /translation="MECITSRCICRPIIFNKIQSLLMLICYRIVEVTPNFQSSIHRVRG FT MSTCHIQQQSILSVIFILPSFLVIIHHIIVNTIKFPDYSLFLSSILTTCDCCLKPPQHL FT KTITLVVLHSSRRGLIIINIEHLLEIIWGS" FT CDS complement(1079..1483) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIQ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIQ1" FT /protein_id="CBJ17713.1" FT /translation="MDSRTGEPITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMKEDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINT FT VIKSVDHVLWNVLHHVVYVDQSYSIKFNLY" FT CDS complement(1224..1628) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HIQ2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HIQ2" FT /protein_id="CBJ17714.1" FT /translation="MRHSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHDHGFTHRGTHHCSSSTEWRVYLGDSKSPVFQDNRTPQQAIPNEGRHHHRSNTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL" FT CDS complement(1531..2616) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIQ3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIQ3" FT /protein_id="CBJ17715.1" FT /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDYIFQYH FT NLKCNLDRIFTPPVEVYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPL FT YSGSNQSAAQDSQEGDQASTS" FT CDS complement(2202..2459) FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HIL5" FT /protein_id="CBJ17716.1" FT /translation="MGLCISMPSSSSKVKPSSETPDISMSLTLITPPNSTQTSREQSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2761 BP; 760 A; 543 C; 636 G; 822 T; 0 other; accggatggc cgcgaaaaaa aaaaagtggg ccccacggcg cactaattga ctaagacatc 60 tccaccaatg aaaagagctc ctcagagctt aattgttttg tggtccccta tttaaacttc 120 gccatcaagt agtgctttgc gcactatgtg ggatccatta gtaaacgagt ttcccgaaac 180 cgttcacggg tttagatgta tgttagcagt taaatatctg cagttagtag agaagactta 240 tgctcctgac acattggggc acgatttaat tagggattta atttcagtaa ttagggctag 300 aaattatgtc gaagcgtcca gcagatataa tcatttccac gcccgcttcg aaggtacgcc 360 gtcgtctcaa cttcgacagc ccatatgtga accgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa ggcatgggcg aacagaccca tgtaccggaa gcccaggatg tacaggatgt 480 acagaagccc agatgtccct aagggatgtg aaggcccatg taaggtgcag tcttttgatg 540 cgaagaatga tattggtcac atgggtaagg ttatttgtct ttctgatgtt actaggggta 600 ttgggttgac ccatcgagta gggaaacgtt tctgtgtgaa gtcattgtat tttgttggca 660 aaatatggat ggacgagaac atcaagacca agaatcatac gaatactgtt atgttttgga 720 tcgttagaga taggcgtcct tcaggaaccc caaatgattt ccagcaagtg ttcaatgttt 780 atgataatga gccctctacg gctactgtga agaacgacca gcgtgatcgt tttcaggtgt 840 tgaggaggtt tcaagcaaca gtcacaggtg gtcaatatgc tgctaaggaa caagctataa 900 tcaggaaatt ttatcgtgtt aacaattatg tggtgtataa tcaccaggaa gctgggaagt 960 atgaaaatca cactgagaat gctttgttgt tgtatatggc atgtactcat gcctctaacc 1020 ctgtgtatgc tactttgaaa gttaggagtt acttctacga ttctgtaaca aattaacatt 1080 aataaagatt gaattttatt gaatatgatt ggtctacata tacaacgtga tgtaatacat 1140 tccataatac atgatcaacc gatttaatta cagtgttaat actgataact cctaagttat 1200 ttaaatactt aagaacttgg gtcttaaaga cccttaagaa acgaccagtc ggaggctgtg 1260 aggtcatcca gattcggaag gctaggaaac atttgtgtat ccccaacgct ttcctcaggt 1320 tgtgattgaa ctgtatttga acggtgatga tgtcttcctt cattaggaat ggcctgttgt 1380 ggtgttctgt tatcttgaaa tacaggggat tttgaatctc ccagataaac acgccattct 1440 gtgcttgagc tgcagtgatg ggttcccctg tgcgtgaatc catggtcgtg gcaggctatg 1500 gatatgaagt atgaacaccc acacggtaga tcaactcgtc gacgcctgat ccccttcttg 1560 gctatcttgt gctgcacttt gattggaacc tgagtagagt gggccttcga gggtgatgaa 1620 tgtcgcattc tttaaagccc aatttttgag tgcagcattc ttctcttcat ccaagaactc 1680 tttataactg gaattgggtc ctggattgca gaggaagata gtgggaattc cgcctttaat 1740 ttgaactggc tttccgtact ttgtatttga ttgccagtcc ctttgggccc ccatgaactc 1800 cttaaagtgc tttaggtaat ggggatctac gtcatcaatg acgttatacc aggcatcatt 1860 attgtagacc tttgggctaa ggtctagatg tccacacaaa taattatgtg gtccgagtga 1920 tctggcccac atcgtcttgc ctgttctact atcaccttca atcactatac ttatgggcct 1980 caaaggccgc gcagcggcac tgacaacgtt ctcggcagcc cattcctcaa gttcttgtgg 2040 aacttggtca aaagaagaag aagaaaaagg agaaacataa acctccaccg gaggtgtaaa 2100 aatcctatct aaattacatt ttaaattatg atattgaaaa atataatctt tagggagttt 2160 ttccctaatt attgctaaag ctgcgtcagc tgaacctgca tttagggcct ctgctgctgc 2220 atcattagct gtctgttgac ctcctcgagc agatcttcca tcgatctgaa actgacccca 2280 gtcgatgtaa tcactgtcct tctcgatgta ggacttgaca tcagagctgg actttgctcc 2340 ctggaagttt gggtggaatt gggaggagtt attagggtga gtgacatcga aatgtctggg 2400 gtttctgaac ttggctttac ctttgaactg gatgagggca tggatatgca gagacccatc 2460 ttggtgtttt tcttgtgcca ctctgataaa taatttatca gatgggcaat ttattgactg 2520 aagaatctcg agcatttgct ctttgggtat tgggcatttt ggataagtga ggaagatatt 2580 tttggcatta acacaaaaag agttaatacg aggcatattg aattggggac actcaaaact 2640 ctgaggaatg ggggactcgg gggacgcatt tatatggtgt ccccaaatgg catatttgta 2700 attttgaaaa attctttaat tcaaaattca aaattcccaa agcggccatc cgtataatat 2760 t 2761 //