ID FN645923; SV 1; circular; genomic DNA; STD; VRL; 2709 BP. XX AC FN645923; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Bhendi yellow vein mosaic virus segment A, complete sequence, clone DE 10c-RCA-AII-F XX KW . XX OS Bhendi yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2709 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; ec3bc5e87b78ccf0fa941e94a6815d89. XX FH Key Location/Qualifiers FH FT source 1..2709 FT /organism="Bhendi yellow vein mosaic virus" FT /segment="A" FT /host="Abelmoschus esculentus" FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="10c-RCA-AII-F" FT /db_xref="taxon:120168" FT CDS complement(160..636) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIN9" FT /protein_id="CBJ17701.1" FT /translation="MGQTDSTRNIRNTHYLTNMNDIVSRFKRLYLTGTLTSPWNIRTSV FT HPVHSGFPVHRPVCPCLLFCDADNGGSSTAGVWAAEVQTPAYFRRGRRNDDIGSSLRHN FT YGSVKYKLNPVLTRTQAYLENNPATKVANILQIAYNETREPYPEIRLIVDPTFF" FT CDS 168..533 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:C3TUJ5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C3TUJ5" FT /protein_id="CBJ17700.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT CDS 328..1098 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HIP1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIP1" FT /protein_id="CBJ17703.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(676..993) FT /gene="AC5a" FT /product="AC5a protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D3HIP0" FT /protein_id="CBJ17702.1" FT /translation="MILVFSCLLLVVNNIIVNPNKFLNQRLFLTRILSTSNGCMPFPQH FT LVPIPMHVLHGRRTGLVIKHIKYFTKILWFICRSSITNKEKHHRIRMVLGLDVLVHPYL FT T" FT CDS complement(1101..1505) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:C3TUK5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C3TUK5" FT /protein_id="CBJ17704.1" FT /translation="MDSRTGARITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI FT ITLRIHFNYNLRKALGIHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVVSINL FT VIKAVEHVLYNVINQTMYVDQYSDIKFNLY" FT CDS complement(1198..1650) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HIP3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HIP3" FT /protein_id="CBJ17705.1" FT /translation="MQHSSFSPNRCTRVPIKVQHREAKRRIRRRRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNTQDPFQLQP FT TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCSFN" FT CDS complement(1547..2557) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIP4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIP4" FT /protein_id="CBJ17706.1" FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLHTPTNKKFIKI FT CRELHENGEPHLHVLIQFDGKYKCQNQRFFDLVSPSRSVNFHPNIQGAKSSSDVKSYID FT KDGDTLEWGGSKSEALRVIRELAPKDYVLQFHNLNANLDRIFTPPLEVYVSPFLSSSFD FT QVPEELEEWVSENVMDAAARPLRPLSLVLEGDSRTGKTMWARSLGPHNYLCGNLDLSPK FT VYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPN FT ASYKEFLDEEKNSALKAWALKNAAFVFLTEPLYSGTNQSTAQGSEETHQEEESRS" XX SQ Sequence 2709 BP; 731 A; 532 C; 640 G; 806 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga actcgcgcga tatttttcga 60 gaactcgcgc gagtggtggg tccagaacgc acgactatgc agactcaaag cttagataac 120 gctccttcgg ctataagtac gtgcgcacta agtttcaatt caaaaaaatg tgggatccac 180 tattaaacga atttccggat acggttcacg ggtttcgttg tatgctatct gtaaaatatt 240 tgcaactttt gtcgcaggat tattctccag atacgcttgg gtacgagtta atacgggatt 300 taatttgtat tttacgctcc cgtaattatg tcgaagcgag ctgccgatat cgtcatttct 360 acgcccgcgt cgaaagtacg ccggcgtctg aacttcggca gcccatacac cagccgtgct 420 gctgccccca ttgtccgcgt cacaaaacaa caggcatgga caaacaggcc tatgaacagg 480 aaacccagaa tgtaccggat gtacagaagt ccggatgttc caaggggatg tgagggtccc 540 tgtaaggtac agtcgtttga atctcgacac gatgtcgttc atattggtaa ggtaatgtgt 600 atttcggatg ttacgcgtgg agtcggtttg acccatcgta taggtaagcg tttttgtgtc 660 aagtcagttt atgttttagg taagatatgg atggacgaga acatcaagac caagaaccat 720 acgaattcgg tgatgttttt ccttgttcgt gatcgacgac cgacagataa accacaagat 780 tttggtgaag tatttaatat gtttgataac gagcccagta cggcgaccgt gaagaacatg 840 catagggatc ggtaccaggt gttgaggaaa tggcatgcaa ccgttactgg tggacaatat 900 gcgagtaagg aacaggcgtt ggttaagaaa tttgttaggg ttaacaatta tgttgtttac 960 aaccagcagg aggcaggaaa atacgagaat catacggaga atgcgttaat gctttatatg 1020 gcttgtaccc acgctagcaa cccagtttat gctacgctga agattaggat atatttttat 1080 gactctgtaa cgaattgaaa ttaataaaga ttgaatttta tatctgaata ttggtctaca 1140 tacattgttt gattaattac attgtacaaa acatgttcga cagctttaat aactaaatta 1200 attgaaacta caccgagatt gttgagatat ttgaggactt gggttttgaa tacccttaag 1260 aaaagaccag tctgagggtg taaggtcgtc cagattcgga aggttagaaa acacttgtgt 1320 attcccagag ctttccgtag gttgtagttg aaatggatcc tgagtgttat tatgtccatg 1380 ttcgtcgtga atggacggtt gtcgtggttg aggatcttga aatagagggg atttggaacc 1440 ttccagatat agacgccatt ctttgcttga gctgcagtga tgcgtgcccc tgtgcgagaa 1500 tccatggttg tggcagttga tagagagata ataagaacac ccgcattcaa gatctactct 1560 cctcctcctg atgcgtctct tcgcttccct gtgctgtact ttgattggta cccgagtaca 1620 acggttcggt gagaaagacg aatgctgcat tttttaaagc ccacgctttc aaagctgagt 1680 tcttttcctc gtccaagaat tctttatagc ttgcgttggg gcctggattg cagaggaaga 1740 ttgttggaat gccgccttta atttgaactg gcttcccgta cttggtgttt gattgccagt 1800 ccctttgggc ccccatgaat tctttaaagt gtttcagata atgcgggtca acatcatcta 1860 taatgttgaa ccacgcatcg tttgaataca ctttagggct tagatctagg ttaccacata 1920 aatagttatg tgggcctaat gacctagccc acatcgtttt gcccgtacga ctgtctccct 1980 ctaagactaa actcaaagga cgcagaggcc gcgcagcggc gtccatgacg ttttccgata 2040 cccattcctc aagttcttct ggaacttgat cgaaagaaga agataaaaaa ggagaaacat 2100 aaacctccaa gggaggtgta aaaatcctat ctaaattggc atttaaatta tgaaattgta 2160 atacataatc cttaggtgct aactccctaa tgactctaag agcctctgac ttactgcctc 2220 cccattcgag ggtgtctccg tccttgtcga tgtaggactt gacatctgag cttgatttag 2280 ctccctgaat gttcggatgg aaatttactg acctgcttgg ggagaccagg tcgaagaatc 2340 gctgattctg gcacttgtat ttgccgtcga actggatgag cacgtgcaga tgaggttccc 2400 cattctcgtg aagctctctg cagatcttga tgaatttttt atttgttgga gtgtgtaggt 2460 tttgtatttg ggaaagtgct tcttctttag taagagagca ttttggataa gtgaggaaat 2520 aatttttgga atatatttga aagcgtttag aaggcatgtt gactaaaatt gagtaccgat 2580 tgactcgctt tggcaactct ctctggtata tcggtaccca atatatagtg agtaccaaat 2640 ggcatatttg taattttgca atgaaattca aaatcctcac gctccaaaag cggccatccg 2700 tataatatt 2709 //