ID FN645917; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC FN645917; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Bhendi yellow vein mosaic virus segment A, complete sequence, clone DE 10a1-RCA-AI-F XX KW . XX OS Bhendi yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; 532e45ca1d94aa2c15938922802715f3. DR EuropePMC; PMC3824786; 28324417. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Bhendi yellow vein mosaic virus" FT /segment="A" FT /host="Abelmoschus esculentus" FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="10a1-RCA-AI-F" FT /db_xref="taxon:120168" FT CDS complement(59..589) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIM0" FT /protein_id="CBJ17682.1" FT /translation="MGQTDSTRNIRNTHYLTNMDNIVSRFKRLYLTGTLTSPWNIRTSV FT HPVHSGFPVHRPVCPCLLFCDADNGGSSTAGVRAAEVQTPAYFRRGRRNDDICSSLRHN FT YENGQYKLNPVLNRNQAYLVNTPATKVANISQKAYNENREPYPGTRLIVDPTFFELKLS FT AHVLIVEGALSKL" FT CDS 121..486 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HIL9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIL9" FT /protein_id="CBJ17681.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQEYSPDTLGYDLIRDL FT ICIVRSRNYVEASCRYRHFYARVESTPASELRQPLHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT CDS 281..1051 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HIM2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIM2" FT /protein_id="CBJ17684.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(629..985) FT /gene="AC5a" FT /product="AC5a protein" FT /db_xref="GOA:D3HIM1" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D3HIM1" FT /protein_id="CBJ17683.1" FT /translation="MGTSHIKHQCILGVILVFSCLLLVVNNVIVNPDKLLNQRLFLRCI FT LTTSNGCIPFPQHLVPIPMHVLHGRRTGLVIKHIKYFTKILWFICRSSITNKEKHHRIR FT MVLGLDVLVHPYLT" FT CDS complement(1054..1458) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIM3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIM3" FT /protein_id="CBJ17685.1" FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILNHDNRPFTTNMDI FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLNL FT VIKAVEHVLYNVINQTMYVDQYSDIKLKLY" FT CDS complement(1151..1603) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HIM4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HIM4" FT /protein_id="CBJ17686.1" FT /translation="MQHSSFSPNRSTPVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP FT SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLT" FT CDS complement(1500..2591) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIM5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIM5" FT /protein_id="CBJ17687.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPVNKKFIR FT ICRELHEDGNPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQTANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVFLTQPL FT YSGTNQSSTQGSEESAQEETSGP" FT CDS complement(2141..2440) FT /gene="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HIM6" FT /protein_id="CBJ17688.1" FT /translation="MKMGILTCMFSSSSKESSSAGTIDSSTSPPQLGQHISIRTFRELK FT AQAMSKPTWRKTETSLIMEFSKSMEDQLEEVAKLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2744 BP; 723 A; 531 C; 654 G; 836 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcgactataa gtacgtgcgc actaagtttc aattcaaaaa 120 atgtgggatc cactattaaa cgagttcccg gatacggttc acggttttcg ttgtatgctt 180 tctgtgaaat atttgcaact tttgtcgcag gagtattcac cagatacgct tggttacgat 240 ttaatacggg atttaatttg tattgtccgt tctcgtaatt atgtcgaagc gagctgcaga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagccctta 360 caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccaagggg 480 atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgttg tccatattgg 540 taaggtaatg tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgtgatcgac gaccgacaga 720 taaaccacaa gattttggtg aagtatttaa tatgtttgat aacgagccca gtacggcgac 780 cgtgaagaac atgcataggg atcggtacca ggtgttgagg aaatggtatg caaccgttac 840 tggtggtcaa tatgcatcga aggaacaggc gttggttaag aagtttatca gggttaacaa 900 ttacgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacaccg agaatgcatt 960 gatgctttat atggcttgta cccatgctag taacccagtt tatgctacgc ttaagattcg 1020 gatatatttt tatgactctg taacgaattg aaattaataa agttttaatt ttatatctga 1080 atattggtct acatacattg tttgattaat tacattgtac aatacatgtt caacggcttt 1140 aataactaaa ttaagtgaga ttacacctag attgttgaga tacttgagta cttgggtttt 1200 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgcactccca gagctttccg aaggttgtag ttgaattgga tcctcattgt 1320 tatgatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ttgaggattt tgaaataaag 1380 gggatttgga acctcccaga taaagacgcc attcgttgaa tgagctgcag tgatgcgttc 1440 ccctgtgcga gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact 1500 caaggtccac tcgtttcctc ctgtgcgctc tcttcgcttc cctgtgttga actttgattg 1560 gtaccggagt agagcggttg ggtgagaaag acgaatgttg cattctttaa agcccaggat 1620 tttaatgctg agttcttatc ctcgtctaag aactctttat agcttgcatt gggccctgga 1680 ttgcagagga agattgttgg tatgccgcct ttaatttgaa ctggcttccc gtactttgtg 1740 tttgattgcc agtccctttg ggcccccatg aattctttaa agtgttttag gaagtgtgga 1800 tcgacgtcat caatgacgtt ataccaagcg tcgttactgt acacctttgg gctaaggtcc 1860 agatgcccgc ataaatagtt atgtgggcct aaagacctag cccacattgt ttttccagta 1920 cgactatctc cctcaattac tatactttga ggtctcaggg gccgcgcagc ggcatcgaca 1980 acgttctcgc acgcccactc ttcaagttct tctggaactt gatcaaatga agaagaagaa 2040 aaaggagaaa cataaggagc tggaggctcc tgaaaatatc tatctaaatt agaatttaaa 2100 ttatgaaatt gaagtagaaa gtctcttggg gctttctcct tcagtatatt gagggcctga 2160 gctttggacc ctgcgttgat tgcctcggca tatgcgtcgt tggcagtttg gcaacctcct 2220 ctagctgatc ttccatcgac ttggaaaact ccatgatcaa ggatgtctcc gtctttctcc 2280 atgtaggttt tgacatcgct tgagctttta gctccctgaa tgttcggatg gaaatgtgct 2340 gacctagttg gggaggtgag gtcgaagaat ctattgttcc tgcactggaa ctttccttcg 2400 aactggatga gaacatgcaa gtgaggattc ccatcttcat gaagttctct gcagattcta 2460 atgaattttt tgtttactgg ggtttggaga tttaagaatt gggaaagtgc ttcttcttta 2520 gtcagggagc acttgggata agtgagaaaa taatttttgg catttatttt aaaccgattg 2580 ggtgctgcca tgttgactta gtcaatcggt gtctctcaac tctctctatg tatcggtgta 2640 ttggagtcct atatatatgg agactctaat ggcataaatg taaataaaag aactttaatt 2700 tgaaattcaa aggaaaaggc taaagcggcc atccgtctaa tatt 2744 //