ID   FN645916; SV 1; linear; genomic DNA; STD; VRL; 1504 BP.
XX
AC   FN645916;
XX
DT   08-FEB-2010 (Rel. 103, Created)
DT   23-FEB-2012 (Rel. 111, Last updated, Version 2)
XX
DE   Tomato leaf curl New Delhi virus AC3, AV1 and AC1 (partial) genes, clone
DE   8-RCA-AII-p
XX
KW   .
XX
OS   Tomato leaf curl New Delhi virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1504
RA   Thompson J.R.;
RT   ;
RL   Submitted (07-DEC-2009) to the INSDC.
RL   Thompson J.R., International Centre for Genetic Engineering and
RL   Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV),
RL   ITALY.
XX
RN   [2]
RA   Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.;
RT   "A survey of geminiviruses and associated satellite DNAs in the
RT   cotton-growing areas of northwestern India";
RL   Arch. Virol. 0:0(2011).
XX
DR   MD5; a40eb7dcb78ddb0fa84759df81412f9e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1504
FT                   /organism="Tomato leaf curl New Delhi virus"
FT                   /segment="A"
FT                   /host="Cyamopsis tetragonoloba"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Haryana"
FT                   /collection_date="Sep-2007"
FT                   /clone="8-RCA-AII-p"
FT                   /db_xref="taxon:223347"
FT   CDS             29..328
FT                   /gene="AV1"
FT                   /gene_synonym="cp"
FT                   /product="coat protein"
FT                   /db_xref="GOA:D3HIL7"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:D3HIL7"
FT                   /protein_id="CBJ17679.1"
FT                   /translation="MFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKF
FT                   VRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   CDS             complement(325..735)
FT                   /gene="AC3"
FT                   /gene_synonym="ren"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:D3HIL6"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D3HIL6"
FT                   /protein_id="CBJ17678.1"
FT                   /translation="MITDSRTGEYITADRAESGVYIWEIRNPLYFKILKHDSRPFLTQH
FT                   DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI
FT                   YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY"
FT   gap             755..854
FT                   /estimated_length=unknown
FT   CDS             complement(<855..1235)
FT                   /gene="AC1"
FT                   /gene_synonym="rep"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:D3HIL8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="UniProtKB/TrEMBL:D3HIL8"
FT                   /protein_id="CBJ17680.1"
FT                   /translation="MAPRSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK
FT                   ICRELHEDGTPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI
FT                   DKDGDILEWGVFQIDGRSARGGQ"
XX
SQ   Sequence 1504 BP; 390 A; 271 C; 306 G; 437 T; 100 other;
     cccccaagat tttggggaag tttttaacat gtttgacaat gaaccgagca cagcaacggt        60
     gaagaacatg catcgtgatc gttatcaagt gttacggaag tggcatgcga ctgtgacggg       120
     aggaacttat gcatctaagg agcaagcatt agttaggaag tttgttaggg ttaataatta       180
     tgttgtttat aatcaacaag aggccggcaa gtatgagaat catactgaaa atgcgttaat       240
     gttgtatatg gcctgtactc acgcatcaaa tcctgtatat gctactttga aaatccggat       300
     ctatttctat gattcggtca caaattaata aatatcgagt tttatatcat atgaagtcca       360
     tacatcaatc gtctgttcca atacattatc caatacatga taaactgctc ttattacatt       420
     ataaattcct atgacaccta acatatccag gtacttaagt acctgggttt tgaagactct       480
     caagaaaatc ccaatctgag ggcgtaagcc cgtccagatt tggaaagtta gaaaacactt       540
     gtgaagtccc agggctttcc gcaggttgtg gttgaattgt atttgaatct tgattatgtc       600
     gtgctgtgtt aggaagggcc tgctgtcgtg tttcaaaatt ttgaaataca ggggatttcg       660
     aatttcccag atatatacgc cactctctgc tcgatccgca gtgatgtatt cccctgtgcg       720
     tgaatccgtg atcatgacag ttgattgata cgtannnnnn nnnnnnnnnn nnnnnnnnnn       780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnctgacc accacgagca gatcgtccat cgatctggaa aacaccccat       900
     tctagaatgt ctccgtcttt gtcgatgtat gctttgacgt ccgatgctga tttagctccc       960
     tgaatgttcg gatggaaatg tgctgaccga cttggggaca ccaagtcgaa gaatctgtta      1020
     tttttgcatt ggaattttcc ttcgaattgg atgagaacat ggatatgcgg agtcccatcc      1080
     tcgtgaagct ctcgacagat cttgatgaat ttcttcgaag ttggggtttc tagggtttgt      1140
     aattgggaaa gtgcctcttc ctttgtaaga gagcacttcg gatacgtgag gaaatagttt      1200
     tttgcattta ttctaaaacg acttcgcgga gccatgaaac ttgtcgtttc gatccggtgt      1260
     ctctcaactt tctctatgta attggtgtct ggagtcccat atataggtaa gacaccatat      1320
     ggcagaattg taattttgaa aagaaaatta ctttaattca aattccctaa agcggccatt      1380
     cgtataatat taccgaatgg ccgcgcaaat ttttatgtgg gaccgcgacg aatgaaattc      1440
     aagctacatg gcttctttaa tgcatgggga cctttaaata gacttgctca ccaagtttgg      1500
     atcc                                                                   1504
//