ID FN645915; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC FN645915; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Croton yellow vein mosaic virus segment A, complete sequence, clone DE 8-RCA-AI-F XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; 9831c7bb04c9080bf18b66c10e6965cc. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Croton yellow vein mosaic virus" FT /segment="A" FT /host="Cyamopsis tetragonoloba" FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="8-RCA-AI-F" FT /db_xref="taxon:207697" FT CDS 145..492 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HIK8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIK8" FT /protein_id="CBJ17670.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGYDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQAHVP FT EAQNVQDVQKS" FT CDS complement(296..613) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIK9" FT /protein_id="CBJ17671.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLNLTWAFASLRNIRTSV FT HPVHSGLPVHGPVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLRHN FT F" FT CDS 305..1090 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HIL1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D3HIL1" FT /protein_id="CBJ17673.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTININKD" FT CDS complement(740..1009) FT /gene="AC5a" FT /product="AC5a protein" FT /db_xref="GOA:D3HIL0" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D3HIL0" FT /protein_id="CBJ17672.1" FT /translation="MSTCHIQQQSILSVIFILPSFLVIIHHIIVNTIEFPNYSLFLSSI FT LTTCNCCLKPSQHLKTITLVVLHSSRRGLIIINIEHLLEIIWGS" FT CDS complement(1077..1481) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIL2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIL2" FT /protein_id="CBJ17674.1" FT /translation="MDSRTGEPITAAQAENGVFIWEIQNPLYFKITEHLNRPFTMKEDI FT IKVQIQFNHNLRKALGMHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLDNLGVISINN FT VIRSVDHVLWNVLHHVVYIEQSYSIKFNLY" FT CDS complement(1222..1626) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HIL3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HIL3" FT /protein_id="CBJ17675.1" FT /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQQAIHNERRHHQSPNTVQSQP FT EESVGDAQMFSSLPNLDDFTASDWSFLKGL" FT CDS complement(1529..2743) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIL4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIL4" FT /protein_id="CBJ17676.1" FT /translation="MAAFGSVRILNFFRNYEKAIWGHHINASPESPIPQSFECPQFNMP FT RINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIRVAQEKHQDGSLHIHAL FT IQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYIEKDSDYIDWGQFQIDG FT RSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPVEA FT YVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHN FT YLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGI FT PTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPLYSGSNQSAAQDSQEGD FT QASTS" FT CDS complement(2200..2457) FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HIL5" FT /protein_id="CBJ17677.1" FT /translation="MGLCISMPSSSSKVKPSSETPDISMSLTLITPPNSTQTSREQSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2755 BP; 757 A; 546 C; 626 G; 826 T; 0 other; accggatggc cgcgaaaaaa aatagtgggc cccacggcac actaactgac aaagacaact 60 tcaccaatga gaagagctcc tcaaagctta attgttttgt ggtcccctat ttaaacttcg 120 tcaccaagta gtgcatcacg cactatgtgg gatccattag taaatgagtt tcccgaaacc 180 gttcacggtt ttagatgtat gttagcagtt aaatatctgc agttggtaga gaagacttat 240 gctcctgaca cattggggta cgatttaatt agggatttaa tttcagtaat tagggctaga 300 aattatgtcg aagcgtccag cagatataat catttccacg cccgcttcga aggtacgccg 360 tcgtctcaac ttcgacagcc catatgtgaa ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaag gcatgggcga acaggcccat gtaccggaag cccagaatgt acaggatgta 480 cagaagtcct gatgttccta agggatgcga aggcccatgt aaggttcagt cttttgatgc 540 gaagaatgat attggtcaca tgggtaaggt tatttgtctt tctgatgtta ctaggggtat 600 tgggctgacc catcgtgtag ggaaacgttt ttgcgtgaag tcattgtatt ttgttggcaa 660 aatatggatg gacgagaaca tcaagaccaa gaaccatacg aatactgtta tgttttggat 720 cgttagagat aggcgtcctt caggaacccc aaatgatttc cagcaagtgt tcaatgttta 780 tgataatgag ccctctacgg ctactgtgaa gaacgaccag cgtgatcgtt ttcaggtgtt 840 gagaaggttt caagcaacag ttacaggtgg tcaatatgct gctaaggaac aagctataat 900 taggaaattc tatcgtgtta acaattatgt ggtgtataat caccaggaag ctgggaagta 960 tgaaaatcac actgagaatg ctttgttgtt gtatatggca tgtactcatg cctctaaccc 1020 tgtgtatgct actttgaaag ttaggagtta cttctacgat tctgtaacaa ttaacattaa 1080 taaagattga attttattga atatgattgt tctatatata caacgtgatg taatacattc 1140 cataatacat gatcaactga tctaattaca ttgttaatac tgataactcc taagttatct 1200 aaatatttta aaacttgagt cttaaagacc cttaagaaac gaccagtctg aggctgtgaa 1260 gtcatccaga ttcggtagac tagaaaacat ttgtgcatcc ccaacgcttt cctcaggttg 1320 tgattgaact gtatttggac tttgatgatg tcttctttca ttgtgaatgg cctgttgagg 1380 tgttctgtta tcttgaaata caggggattt tgaatctccc agataaacac gccattctct 1440 gcttgagctg cagtgatggg ttcccctgtg cgtgaatcca tggtcgtggc aggctatgga 1500 tatgaagtat gaacacccac acggtagatc aactcgtcga cgcctgatcc ccttcttggc 1560 tatcttgtgc tgcactttga ttggaacctg agtagagtgg gccttcgagg gtgatgaagg 1620 tcgcattctt taaagcccaa ttcttgagtg cagcattttt ctcttcatcc aagaactctt 1680 tatagcttga gttgggtcct ggattgcaga ggaagatagt gggaattccg cctttaattt 1740 gaactggctt tccgtacttt gtatttgatt gccagtccct ttgggccccc atgaattcct 1800 taaagtgctt taggtaatgg ggatctacgt catcaatgac gttataccag gcatcattat 1860 tgtagacctt cgggctaagg tctagatgtc cacacaaata attatgtggt ccgagtgatc 1920 tggcccacat cgtcttgccc gttctactat caccctctat cactatactt atgggcctca 1980 aaggccgcgc agcggcactg acaacgttct cggcagccca ttcttcaagt tcttgtggaa 2040 cttggtcaaa agaagaagaa gaaaaaggag aaacataagc ctccaccgga ggtgtaaaaa 2100 tcctatctaa attacatttt aagttatgat attgaaaaat aaaatcttta gggagttttt 2160 ccctgattat tgctaaagct gcgtcagctg aacctgcatt tagggcctct gctgctgcat 2220 cattagctgt ctgttgacct cctcgagcag atcttccatc gatctgaaac tgaccccagt 2280 cgatgtaatc actgtccttc tcgatgtagg acttgacatc agagctggac tttgctccct 2340 ggaagtttgg gtggaattgg gaggagttat tagggtgagt gacatcgaaa tgtctggggt 2400 ttctgaactt ggctttacct ttgaactgga tgagggcatg gatatgcaga gacccatctt 2460 ggtgtttttc ttgtgccact ctgataaata atttatcaga tgggcaattt attgactgaa 2520 gaatttcgag catttgctct tttggaattg ggcatttggg ataagtgaga aaaatatttt 2580 tggcattaac acaaaaagag ttaatacgag gcatattgaa ttggggacac tcaaaactct 2640 gaggaatggg ggactcgggg gacgcattta tatggtgtcc ccaaatggct ttttcgtaat 2700 tacgaaaaaa attcaaaatt ctcacgctcc caaaagcggc catccgtata atatt 2755 //