ID FN645912; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC FN645912; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus segement A, complete sequence, clone DE 3d-RCA-AI-F XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2753 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; 3920156280ca4f048879a88da6d6144e. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="A" FT /host="Gossypium hirsutum" FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="3d-RCA-AI-F" FT /db_xref="taxon:223259" FT CDS complement(75..806) FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIK0" FT /protein_id="CBJ17662.1" FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISNQEKHHTIRVILR FT LNVLIHPYLTQHINRLDTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF FT TSSRNIWTSVHPVHPGLPVHRPVCPCLLFCDADNGGSSTAGVWAAEVQTPAYFRRGRRN FT DDIGSSLRHNYGSVKYKLNPVLTRTQAYPVNNPATKVANISQKAYTETREPYQGIRLIV FT DPTCLNLKLSAQVLIVCGSVI" FT CDS 131..487 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HIJ9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIJ9" FT /protein_id="CBJ17661.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT CDS 291..1061 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HIK1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIK1" FT /protein_id="CBJ17663.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1064..1468) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:A8Y822" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A8Y822" FT /protein_id="CBJ17664.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT CDS complement(1161..1613) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:A8Y823" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A8Y823" FT /protein_id="CBJ17665.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT CDS complement(1510..2598) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIK4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIK4" FT /protein_id="CBJ17666.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISLVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT CDS complement(2142..2444) FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HIK5" FT /protein_id="CBJ17667.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEDNKQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2753 BP; 736 A; 554 C; 627 G; 836 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgggatc cactattaaa cgaattccct gatacggttc acgggtttcg 180 gtgtatgctt tctgtgaaat atttgcaact tttgtcgcag gattattcac cggatacgct 240 tgggtacgag ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc 300 gagctgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg 360 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat 420 ggacaaacag gcctatgaac aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgtca 900 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tgaagattag gatatatttt tatgactctg taacgaattg atattaatga agtttgaatt 1080 ttatttctga atattgatct acatacatag tttgttggat tacattgtac aatacatgtt 1140 ctacagcttt aataactaaa ttaattgaaa ttacaccgag attgttcaga tatttgagga 1200 cttgggtttt gaataccctt aagaaaagac cagtctgagg ctgtaaggtc gtccagattc 1260 ggaatgttag aaaacacttg tgcagtccca gagctttccg agtgttgtag ttgaactgga 1320 tcctgatcgt gagtatgtcc atattcgtcg tgaatggacg gttgacgtgg ctgatgatct 1380 tgaaataaag gggatttgga acctcccaga tatatgcgcc attccctgct tgagctgcag 1440 tgatgggttc ccctgtgcgt gaatccatgg ttgtggcagt tgattgacag ataataagaa 1500 cacccgcatt caagatctac tctcctcctc ctgttgcgcc tcttcgcttc cctgtgctgt 1560 actttgattg gtacctgagt acatgggtct atcaagtgtg atgaagatcg cattctttaa 1620 agcccaattt tttagtgcag aattcttctc ttcatccaaa aactctttat agcttgaatt 1680 gggtcctgga ttgcagagga agatagtggg aattccgcct ttaatttgaa ctggcttccc 1740 gtattttgta tttgattgcc agtccttttg ggcccccatg aactccttaa agtgctttag 1800 gtaatgcggg tcgacgtcat caatgacgtt aaaccaggcg tcattactgt atacccttgg 1860 gctcagatct agatgtccac acagataatt atgtggacct aatgatctgg cccacatcgt 1920 cttccccgtc ctactgtcac cctcaatcac taaacttatt ggtctattgg cccgcgcagc 1980 ggcactgacg acgttctcgg cagcccacac ttcaagttct tctggaactt gatcgaaaga 2040 agaagaggaa aaaggagaaa cataaggagc tggtggctcc tgaaagattc tgtctagatt 2100 tgcatttaaa ttatgaaatt gcagtacaaa atccttagga gctagttcct taatgactct 2160 aagagcctcc gacttacttc ccgcgttaag tgctgcggcg taagcgtcat tggctgtttg 2220 ttgtcctcct cttgctgacc ttccgtcgat ctgaaattgc ccccagtcga gaatgtcccc 2280 gtccttctcg atgtaggatt tgacgtcgga gctggattta gctccctgta tgttcggatg 2340 gaaatgtgct gacctgcttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa 2400 tttcccttcg aactggatga gaacatgcaa gtgaggagtc ccatcttcgt gaagctctct 2460 gcagattcta atatattttt ttgaagttgg ggtttgtata tttaataatt gggaaagtgc 2520 ttcctctttg gtgagagaac atttgggata agtgatgaaa tagtttttgg aataaatacc 2580 gttccgcttt ggaggcatgt tgactaaaat tgatcaccga ttgaccgctc ttgcaactct 2640 ccccggtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaaa 2700 actttaattt gaaattcaaa ccaaaaggct aaagcggcca tccgtttaat att 2753 //