ID FN645905; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC FN645905; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus segment A, complete sequence, clone DE 4-RCA-AI-F XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2737 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; 6f97ce4b66caf10d9c42477bd60aeb46. XX FH Key Location/Qualifiers FH FT source 1..2737 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="A" FT /host="Lagenaria siceraria" FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="4-RCA-AI-F" FT /db_xref="taxon:223347" FT CDS 41..427 FT /gene="AV3" FT /product="AV3 protein" FT /db_xref="UniProtKB/TrEMBL:D3HII5" FT /protein_id="CBJ17647.1" FT /translation="MKFTLHGLFISWGPINRLAHQVFIDQHVGSIVARISRKRAWSEVH FT ASCKISPRDREELFPRHSRLRSCPRSHPCSSSKELWRSDQQISSFQRPYRRYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT CDS 120..458 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HII6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HII6" FT /protein_id="CBJ17648.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKSYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HII8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D3HII8" FT /protein_id="CBJ17650.1" FT /translation="MAKRPADIIISTPVSKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..534) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HII7" FT /protein_id="CBJ17649.1" FT /translation="MRDIVPRFKRLHLARAFTAPWHVGTSIHSVHSGFSVHRPVGPGLC FT FCDAGNGDNCTSSIGAVEVETSAYLRYGR" FT CDS complement(1047..1457) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HII9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HII9" FT /protein_id="CBJ17651.1" FT /translation="MMMDSRTGEYITADRAESGVYIWEIRNPLYFKILDHASRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKILTGLRPPIGLFLKVFKTQVLKYLDMLGVVGI FT NNVFRAVYHVLDNVLEQTIEVWTSYDIKLDVY" FT CDS complement(1177..1596) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HIJ0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HIJ0" FT /protein_id="CBJ17652.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKRKKSIRRKRVDLTCGCTYYLSIN FT CHDDGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFGPRQQALPNTARHNQDSNTVQPQL FT AESPGTSQVFSNFQDLDGLTPSDWAFLESLQNPGP" FT CDS complement(1499..2584) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIJ1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIJ1" FT /protein_id="CBJ17653.1" FT /translation="MPQPKRFQIYAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIR FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYV FT EKDRDFVDFGVFQIDGRSARGGCQSANDAYAEAINAGSKSAALNILREKAPKDFVLQYH FT NLVSNLDRIFTPPSEVYVSPFSISSFDRVPPELVDWANVNVLCAAARPFRPISIIIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT KSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWASKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT CDS complement(2134..2427) FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HIJ2" FT /protein_id="CBJ17654.1" FT /translation="MGNLIYTCSSSSKANSNVRTTDSSTWFPQPGQHISIRTFRELRAR FT QMSKPMWRKTETSLILEFSRSMEDQLEEVANLPTTHMPRQSMQGPNLRPSIF" XX SQ Sequence 2737 BP; 756 A; 586 C; 612 G; 783 T; 0 other; accggatggc cgcccaaatt tttaggtggg tccgcgacca atgaaattca cgctacatgg 60 cttatttatt tcgtggggac caataaatag acttgctcac caagtcttca tcgaccaaca 120 tgtgggatcc attgttgcac gaatttccag aaagcgtgca tggtctgagg tgcatgctag 180 ctgtaaaata tctccaagag atagagaaga gctattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcatcctt gttcttcgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgt atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgcaaggt gcagtctttt gaatctaggc acgatgtctc tcatattggc 540 aaggtcatgt gcgttagtga tgttacacga ggaactggac taacacatcg cgtagggaag 600 cgattttgtg tgaaatccgt ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttagttc gtgaccgtcg tcctacagga 720 tctccgcaag attttgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gaccgtgacg 840 ggaggaacat atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtagttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctattttt atgattcggt aacaaattaa taaacatcta actttatatc atatgaagtc 1080 catacttcaa tagtttgttc cagtacatta tccaatacat gataaactgc cctaaataca 1140 ttattaattc ctactacacc taacatatct aggtacttaa ggacctgggt tttgaagact 1200 ttcaagaaaa gcccaatcgg agggcgtaag cccgtcaaga tcttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaagttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctggcg tggtccaaaa ttttgaaata caggggattt 1380 cgaatttccc agatatatac gccactctct gctcgatccg cagtgatgta ctcccctgtg 1440 cgtgaatcca tcatcatggc agttgatcga tagataatac gtgcacccac acgtcagatc 1500 aactcgcttc ctgcgaatgc tcttcttcct cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gcttgcccac tgcttcagtg 1620 ctgcattttt ttcctcgtcc agatattcct tatagctgct gtttggacct ttattgcaga 1680 ggaagatagt gggaattcct cctttaatca tgaccggctt tccgtacttg gtattgcttt 1740 tccagtcacg ctgggccccc atgaattctt taaagtgttt tagataatgg ggatcaacgt 1800 catcaatgac gttgtaccac gcatcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtgtggt cccaaacaac gagcccacat tgtctttccc gttcgactat 1920 caccctctat gattatgctt ataggtctaa atggccgcgc agcggcacac agaacattga 1980 catttgccca atcgacgagt tctggaggaa ctctgtcgaa ggaagaaatt gaaaatggag 2040 aaacataaac ctcagacgga ggtgtaaaaa tcctgtctaa attactaact aaattgtgat 2100 actgtaaaac aaaatctttt ggagccttct ctcttaaaat attgagggcc gcagatttgg 2160 accctgcatt gattgcctcg gcatatgcgt cgttggcaga ttggcaacct cctctagctg 2220 atcttccatc gatctggaaa actccaaaat caacgaagtc tctgtctttc tccacatagg 2280 ctttgacatc tgacgcgctc ttagctccct gaatgttcgg atggaaatgt gctgacctgg 2340 ttggggaaac caggtcgaag aatctgttgt tctgacattt gaatttgcct tcgaactgga 2400 tgagcacgtg tagatgaggt tccccatttt cgtgcaattc ccgtgaaact cgaatgaatt 2460 tcttcgaagt tggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg ataagtgagg aaatagtttt tggcatatat ttgaaaacgt ttcggttgag 2580 gcatattgac ttggtcaatc ggtactcaac caacttggct atgcaatcgg tgatcagtac 2640 tcaatatata ggtgagtacc gaatggcata attgtaattt tgaaaacaaa attactttaa 2700 ttcaaattcc gacaaaagcg gccatccgta taatatt 2737 //