ID FN645902; SV 1; circular; genomic DNA; STD; VRL; 2750 BP. XX AC FN645902; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Croton yellow vein mosaic virus segment A, complete sequence, clone DE 9c-RCA-AII-F XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2750 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; 67c1cdc8640f8a26c8b55da15522adca. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Croton yellow vein mosaic virus" FT /segment="A" FT /host="Acalypha sp." FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="9c-RCA-AII-F" FT /db_xref="taxon:207697" FT CDS 146..502 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HIF7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIF7" FT /protein_id="CBJ17637.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP FT EAQDVQDVQKPRCP" FT CDS complement(291..614) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIH6" FT /protein_id="CBJ17638.1" FT /translation="MGQPNTSSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRDIWASV FT HPVHPGLPVHGSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLRHN FT FLP" FT CDS 306..1076 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8B8N7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8B8N7" FT /protein_id="CBJ17640.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT CDS complement(741..1145) FT /gene="AC5a" FT /product="AC5a protein" FT /db_xref="GOA:D3HIH7" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D3HIH7" FT /protein_id="CBJ17639.1" FT /translation="MECITSRCICRPIIFNKIQSLLMLICYRIVEVTPNFQSSIHRVRG FT MSTCHIQQQSILSVIFILPSFLVIIHHIIVNTIEFPNYSLFLSSILTTCDCCLKPPQHL FT KTITLVVLHSSRRGLIIINIEHLLEIIWGS" FT CDS complement(1079..1483) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIH9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIH9" FT /protein_id="CBJ17641.1" FT /translation="MDSRTGEPITAAQAENGVFIWEIQNPLYFKITQHHNRPYLMKEDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINT FT VIKSVDHVLWNVLHHVVYVDQSYSIKFNLY" FT CDS complement(1224..1628) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HII0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HII0" FT /protein_id="CBJ17642.1" FT /translation="MRPSSPSKAHSTQIPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNTTPQQAIPNEGRHHHRSDTVQSQP FT EESVGDTQMFPSLQNLDDLTASDWSFLKGL" FT CDS complement(1531..2616) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HII1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HII1" FT /protein_id="CBJ17643.1" FT /translation="MPRQHLFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPDSSYKEFLDEEKNAALKNWALKNATFITLEGPL FT YSDSNQSAAQDSQEGDQASTS" FT CDS complement(2202..2459) FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HII2" FT /protein_id="CBJ17644.1" FT /translation="MGACISTPSSNSKVNPSSETPDISMSLTLITPPNSTQTSRELSPV FT PMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2750 BP; 745 A; 541 C; 642 G; 822 T; 0 other; accggatggc cgcgaaaaaa aaaaagtggg ccccttggcg cactaaatga caaagatatc 60 tccaccaatg aaaagagctc ctcagagctt aattgttttg tggtccccta tttaaacttc 120 gccaccaagt agtgcattgc gcactatgtg ggatccatta gtaaacgagt ttcccgaaac 180 cgttcacggg tttagatgta tgttagcagt taaatatctg cagttagtag agaagactta 240 tgctcctgac acattggggc acgatttaat tagggattta atttcagtaa ttagggcaag 300 aaattatgtc gaagcgtcca gcagatataa tcatttccac gcccgcttcg aaggtacgcc 360 gtcgtctcaa cttcgacagc ccatatgtga accgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa ggcatgggcg aacagaccca tgtaccggaa gcccaggatg tacaggatgt 480 acagaagccc agatgtccct aagggatgtg aaggcccatg taaggtgcag tcttttgatg 540 cgaagaatga tattggtcac atgggtaagg ttatttgtct ttctgatgtt actagaggta 600 ttgggctgac ccatcgagta gggaaacgtt tctgtgtgaa gtcattgtat tttgttggca 660 aaatatggat ggacgagaac atcaagacta agaaccatac gaatactgtt atgttttgga 720 tcgttagaga taggcgtcct tcaggaaccc caaatgattt ccagcaagtg ttcaatgttt 780 atgataatga gccctctacg gctactgtga agaacgacca gcgtgatcgt tttcaggtgt 840 tgaggaggtt tcaagcaaca gtcacaggtg gtcaatatgc tgctaaggaa caagctataa 900 ttaggaaatt ctatcgtgtt aacaattatg tggtgtataa tcaccaggaa gctgggaagt 960 atgaaaatca cactgagaat gctttgttgt tgtatatggc atgtactcat gcctctaacc 1020 ctgtgtatgc tactttgaaa gttaggagtt acttctacga ttctgtaaca aattaacatt 1080 aataaagatt gaattttatt gaatatgatt ggtctacata tacaacgtga tgtaatacat 1140 tccataatac atgatcaact gatttaatta cagtgttaat actgataact cctaagttat 1200 ttaaatactt aagaacttgg gtcttaaaga cccttaagaa acgaccagtc ggaggctgtg 1260 aggtcatcca gattctgaag gctaggaaac atttgtgtat ccccaacgct ttcctcaggt 1320 tgtgattgaa ctgtatctga acggtgatga tgtcttcctt cattaggtat ggcctgttgt 1380 ggtgttgtgt tatcttgaaa tacaggggat tttgaatctc ccagataaac acgccattct 1440 ctgcttgagc tgcagtgatg ggttcccctg tgcgtgaatc catggttgtg gcaggctatg 1500 gatatgaagt atgaacagcc acacggtaga tcaactcgtc gacgcctgat ccccttcttg 1560 gctatcttgt gctgcacttt gattggaatc tgagtagagt gggccttcga gggtgatgaa 1620 ggtcgcattt tttaaagccc aattcttgag tgcagcattt ttctcttcat ccaagaactc 1680 tttataactg gaatcgggtc ctggattgca gaggaagata gtgggaattc cgcctttaat 1740 ttgaactggc tttccgtact ttgtatttga ttgccagtcc ctttgggccc ccatgaattc 1800 cttaaagtgc tttaggtagt gggggtctac gtcatcaatg acgttatacc aggcatcatt 1860 attgtagacc tttgggctaa ggtctagatg tccacacaaa tagttatgtg gtccgagtga 1920 tctggcccac atggtcttgc ccgttctact atcaccctct atcactatac ttatgggcct 1980 caaaggccgc gcagcggcac tgacaacgtt ctcggcagcc cattcctcaa gttcttccgg 2040 aacttggtca aaagaagaag aagaaaaagg agaaacataa acctccactg gaggtgtaaa 2100 aatcctatct aaattacatt ttaaattatg atattgaaaa ataaaatctt tagggagttt 2160 ttccctaatt attgctaaag ctgcgtcagc tgaacctgcg tttagggcct ctgctgctgc 2220 atcattagct gtctgttgac ctcctctagc agatcttcca tcgatctgaa actgacccca 2280 gtcgatgtaa tcaccgtcct tctcgatgta ggacttgaca tcggaactgg acttagctcc 2340 ctggaagttt gggtggaatt gggtggagtt attagggtga gtgacatcga aatgtctggg 2400 gtttctgaac tgggatttac ctttgaattg gatgagggcg tggatatgca ggctcccatc 2460 ttggtgtttt tcttgtgata ctctgataaa taatttatca gaaggacaag aaatgttttt 2520 aagcagttcg agcatttgct ctttgggtat tgggcattta ggataagtga ggaagatatt 2580 ttttgcctta acttggaata ggtgctgacg tggcattttg aattgggtgc tcttcaaaac 2640 tctgaggaat ggggagcttt gggtgcctat ttataccgag ctcccaaatg gcactttcgt 2700 aattacgaaa gaaatttcaa aattcccaaa gcggccatcc gtataatatt 2750 //