ID FN645901; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC FN645901; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Croton yellow vein mosaic virus segment A, complete sequence, clone DE 9c-RCA-AI-F XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2749 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; 2e89789c697db4e672d9fd551cdbd8cc. XX FH Key Location/Qualifiers FH FT source 1..2749 FT /organism="Croton yellow vein mosaic virus" FT /segment="A" FT /host="Acalypha sp." FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="9c-RCA-AI-F" FT /db_xref="taxon:207697" FT CDS 146..502 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HIG7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIG7" FT /protein_id="CBJ17629.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNNFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP FT EAQDVQDVQKPRCP" FT CDS complement(297..614) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIG8" FT /protein_id="CBJ17630.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRDIWASV FT HPVHPGLPVHGSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNYYICWTLRHN FT F" FT CDS 306..1076 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8B8N7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8B8N7" FT /protein_id="CBJ17632.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT CDS complement(741..1145) FT /gene="AC5a" FT /product="AC5a protein" FT /db_xref="GOA:D3HIG9" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D3HIG9" FT /protein_id="CBJ17631.1" FT /translation="MECITSHCICRPIIFNKIQYLLMLICYRIVEVTPNFQSSIHRVRG FT MSTCHIQQQSILSVIFILPSFLVIIHHIIVNTIEFPNYSLFLSSILTTCDCCLKPPQNL FT KTITLVVLHSSRRGLIIINIEHLLEIIWSS" FT CDS complement(1079..1483) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIH1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIH1" FT /protein_id="CBJ17633.1" FT /translation="MDSRTGEPITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMKEDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINT FT VIKSVDHVLWNVLHHIVYVDQSYSIKFNIY" FT CDS complement(1224..1628) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HIH2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HIH2" FT /protein_id="CBJ17634.1" FT /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHDHGFTHRGTHHCSSSTEWRVYLGDSKSPVFQDNRTPQQAIPNEGRHHNRSNTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL" FT CDS complement(1531..2616) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIH3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIH3" FT /protein_id="CBJ17635.1" FT /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNADSADAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEAYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPL FT YSGSNQSAAQDSQEGNQASTS" FT CDS complement(2202..2459) FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HIH4" FT /protein_id="CBJ17636.1" FT /translation="MGLCISMPSSSSKVKPSSETPDISMSLTLITPPNSTQTSREQSPV FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2749 BP; 755 A; 546 C; 637 G; 811 T; 0 other; accggatggc cgcgaaaaaa aaaaagtggg ccccacggcg cactaactga caaagacacc 60 cccaccaatg aaaagagctc ctcagagctt aattgttttg tggtccctta tttaaacttc 120 gtcaccaagt agtgcattgc gcactatgtg ggatccatta gtaaacgagt ttcccgaaac 180 cgttcacggg tttagatgta tgttagcagt taaatatctg cagttagtag agaagactta 240 tgctcctgac acattggggc acgatttaat tagggattta atttcagtaa ttagggctag 300 aaattatgtc gaagcgtcca gcagatataa taatttccac gcccgcttcg aaggtacgcc 360 gtcgtctcaa cttcgacagc ccatatgtga accgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa ggcatgggcg aacagaccca tgtaccggaa gcccaggatg tacaggatgt 480 acagaagccc agatgtccct aagggatgtg aaggcccatg taaggtgcag tcttttgatg 540 cgaagaatga tattggtcac atgggtaagg ttatttgtct ttctgatgtt actaggggta 600 ttgggctgac ccatcgagta gggaaacgtt tctgtgtgaa gtcattgtat tttgttggca 660 aaatttggat ggacgagaac atcaagacca agaaccatac gaatactgtt atgttttgga 720 tcgttagaga taggcgtcct tcaggaactc caaatgattt ccagcaagtg ttcaatgttt 780 atgataatga gccctctacg gctactgtga agaacgacca gcgtgatcgt tttcaggttt 840 tgaggaggtt tcaagcaaca gtcacaggtg gtcaatatgc tgctaaggaa caagctataa 900 ttaggaaatt ctatcgtgtt aacaattatg tggtgtataa tcaccaggaa gctgggaagt 960 atgaaaatca cactgagaat gctttgttgt tgtatatggc atgtactcat gcctctaacc 1020 ctgtgtatgc tactttgaaa gttaggagtt acttctacga ttctgtaaca aattaacatt 1080 aataaatatt gaattttatt gaatatgatt ggtctacata tacaatgtga tgtaatacat 1140 tccataatac atgatcaacc gatttaatta cagtgttaat actgataact cctaagttat 1200 ttaaatactt aagaacttgg gtcttaaaga cccttaagaa acgaccagtc ggaggctgtg 1260 aggtcatcca gattcggaag gctaggaaac atttgtgtat ccccaacgct ttcctcaggt 1320 tgtgattgaa ctgtatttga acggttatga tgtcttcctt cattaggaat ggcctgttgt 1380 ggtgttctgt tatcttgaaa tacaggggat tttgaatctc ccagataaac acgccattct 1440 gtgcttgagc tgcagtgatg ggttcccctg tgcgtgaatc catggtcgtg gcaggctatg 1500 gatatgaagt atgaacaccc acacggtaga tcaactcgtc gacgcctgat tcccttcttg 1560 gctatcttgt gctgcacttt gattggaacc tgagtagagt gggccttcga gggtgatgaa 1620 ggtcgcattc tttaaagccc aattcttgag tgcagcattc ttctcttcat ccaagaactc 1680 tttataactg gaattgggtc ctggattgca gaggaagata gtgggaattc cgcctttaat 1740 ttgaactggc tttccgtact ttgtatttga ttgccagtcc ctttgggccc ccatgaattc 1800 cttaaagtgc tttaggtagt ggggatctac gtcatcaatg acgttatacc aggcatcatt 1860 attgtagacc tttgggctaa ggtctagatg tccacacaaa tagttatgtg gtccgagtga 1920 tctggcccac atcgtcttgc ccgtccgact atcaccctct atcactatac ttatgggcct 1980 caaaggccgc gcagcggcac tgacaacgtt ctcggcagcc cattcctcaa gttcttgtgg 2040 aacttggtca aaagaagaag aagaaaaagg agaaacataa gcctccaccg gaggtgtaaa 2100 aatcctatct aaattacatt ttaaattatg atattgaaaa ataaaatctt tagggagttt 2160 ttccctaatt attgctaaag ctgcgtcagc tgaatctgca tttagggcct ctgctgctgc 2220 atcattagct gtctgttgac ctcctcgagc agatcttcca tcgatctgaa actgacccca 2280 gtcgatgtaa tcactgtcct tctcgatgta ggacttgaca tcagaactgg actttgctcc 2340 ctggaagttt gggtggaatt gggaggagtt attagggtga gtgacatcga aatgtctggg 2400 gtttctgaac ttggctttac ctttgaactg gatgagggca tggatatgca gagacccatc 2460 ttggtgtttt tcttgtgcca ctctgataaa taatttatca gatgggcaat ttattgactg 2520 aaggatctcg agcatttgct ctttgggtat tgggcatttt ggataagtga ggaagatatt 2580 tttagcatta acacaaaaag agttaatacg aggcatattg aattggggac actcaaaact 2640 ctgaggaatg ggggactctg gggacgcatt tatatggtgt ccccaaatgg cactttcgta 2700 attacgaaag aaatttcaaa attcccaaag cggccatccg tataatatt 2749 //