ID FN645898; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC FN645898; XX DT 08-FEB-2010 (Rel. 103, Created) DT 23-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Croton yellow vein mosaic virus segment A, clone 9b-RCA-AI-F XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Thompson J.R.; RT ; RL Submitted (07-DEC-2009) to the INSDC. RL Thompson J.R., International Centre for Genetic Engineering and RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV), RL ITALY. XX RN [2] RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.; RT "A survey of geminiviruses and associated satellite DNAs in the RT cotton-growing areas of northwestern India"; RL Arch. Virol. 0:0(2011). XX DR MD5; 0e0629b64a20456bbb719061776cb542. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Croton yellow vein mosaic virus" FT /segment="A" FT /host="Acalypha sp." FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /collection_date="Sep-2007" FT /clone="9b-RCA-AI-F" FT /db_xref="taxon:207697" FT CDS 144..500 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3HIF7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3HIF7" FT /protein_id="CBJ17619.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP FT EAQDVQDVQKPRCP" FT CDS complement(295..612) FT /gene="AC5b" FT /product="AC5b protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D3HIF8" FT /protein_id="CBJ17620.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRDIWASV FT HPVHPGLPVHGSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLRHN FT F" FT CDS 304..1074 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8B8N7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8B8N7" FT /protein_id="CBJ17622.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT CDS complement(739..1143) FT /gene="AC5a" FT /product="AC5a protein" FT /db_xref="GOA:D3HIF9" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D3HIF9" FT /protein_id="CBJ17621.1" FT /translation="MECITSRCICRPIIFNKIQSLLMLICYRIVEVTPNFQSSIHRVRG FT MSTCHIQQQSILSVIFILPSFLVIIHHIIINTIEFPNYSLFLSSILTTCDCCLKPPQHL FT KTITLVVLHSSRRGLIIINIEHLLEIIWGS" FT CDS complement(1077..1481) FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIG1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIG1" FT /protein_id="CBJ17623.1" FT /translation="MDSRTGEPITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMKEDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINI FT VIKSVDHVLWNVLHHVVYVDQSYSIKFNLY" FT CDS complement(1222..1626) FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:D3HIG2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3HIG2" FT /protein_id="CBJ17624.1" FT /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHDHGFTHRGTHHCSSSTEWRVYLGDSKSPVFQDNRTPQQAILNEGRHHHRSDTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL" FT CDS complement(1734..2615) FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:D3HIG3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3HIG3" FT /protein_id="CBJ17625.1" FT /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGEFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQFH FT NLKCNLDRIFTPPMEAYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT PIKHKVRKASSN" FT CDS complement(2201..2458) FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3HIG4" FT /protein_id="CBJ17626.1" FT /translation="MGLCISMPSSSSKVKPNSETPDISMSLILITPPNSTQTSREQSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRP" XX SQ Sequence 2760 BP; 763 A; 542 C; 635 G; 820 T; 0 other; accggatggc cgcgaaaaaa aatgtggacc ccacggcgca ctaactgaca aagacatcac 60 gaccaatgaa aagagctcct cagagcttaa ttgttttgtg gtcccctatt taaacttcgc 120 caccaagtag tgcattgcgc actatgtggg atccattagt taatgagttt cccgaaaccg 180 ttcacgggtt tagatgtatg ttagcagtta aatatctgca gttagtagag aagacttatg 240 ctcctgacac attggggcac gatttaatta gggatttaat ttcagtaatt agggctagaa 300 attatgtcga agcgtccagc agatataatc atttccacgc ccgcttcgaa ggtacgccgt 360 cgtctcaact tcgacagccc atatgtgaac cgtgctgctg cccccattgt ccgcgtcacc 420 aaagcaaagg catgggcgaa cagacccatg taccggaagc ccaggatgta caggatgtac 480 agaagcccag atgtccctaa gggatgtgaa ggcccatgta aggtgcagtc ttttgatgcg 540 aagaatgata ttggtcacat gggtaaggtt atttgtcttt ctgatgttac taggggtatt 600 gggctgaccc atcgagtagg gaaacgtttc tgtgtgaagt cattgtattt tgttggcaaa 660 atatggatgg acgagaacat caagaccaag aaccatacga atactgttat gttttggatc 720 gttagagata ggcgtccttc aggaacccca aatgatttcc agcaagtgtt caatgtttat 780 gataatgagc cctctacggc tactgtgaag aacgaccagc gtgatcgttt tcaggtgttg 840 aggaggtttc aagcaacagt cacaggtggt caatatgctg ctaaggaaca agctataatt 900 aggaaattct atcgtgttaa taattatgtg gtgtataatc accaggaagc tgggaagtat 960 gaaaatcaca ctgagaatgc tttgttgttg tatatggcat gtactcatgc ctctaaccct 1020 gtgtatgcta ctttgaaagt taggagttac ttctacgatt ctgtaacaaa ttaacattaa 1080 taaagattga attttattga atatgattgg tctacatata caacgtgatg taatacattc 1140 cataatacat gatcaactga tttaattaca atgttaatac tgataactcc taagttattt 1200 aaatacttaa gaacttgggt cttaaagacc cttaagaaac gaccagtcgg aggctgtgag 1260 gtcatccaga ttcggaaggc taggaaacat ttgtgtatcc ccaacgcttt cctcaggttg 1320 tgattgaact gtatctgaac ggtgatgatg tcttccttca ttaagaatgg cctgttgtgg 1380 tgttctgtta tcttgaaata caggggattt tgaatctccc agataaacac gccattctgt 1440 gcttgagctg cagtgatggg ttcccctgtg cgtgaatcca tggtcgtggc aggctatgga 1500 tatgaagtat gaacacccac acggtagatc aactcgtcga cgcctgatcc ccttcttggc 1560 tatcttgtgc tgcactttga ttggaacctg agtagagtgg gccttcgagg gtgatgaagg 1620 tcgcattctt taaagcccag ttcttgagtg cagcattctt ctcttcatcc aagaattctt 1680 tataactgga attgggtcct ggattgcaga ggaagatagt gggaattcct cctttaattt 1740 gaactggctt tccgtacttt gtgtttgatt ggccagtccc tttgggctcc catgaattct 1800 ttaaagtgct ttagatagtg gggatcgacg tcatcaatga tgttgtacca ggcatcatta 1860 ttgtagacct ttgggctaag gtctagatgt ccacacaaat aattatgtgg tccaagtgat 1920 ctggcccaca tcgtcttgcc tgttctacta tcaccctcta tcactatact tatgggcctc 1980 aaaggccgcg cagcggcact gacaacgttc tcggcagccc actcctcaag ttcttgtgga 2040 acttgatcaa aagaagaaga agaaaaagga gaaacataag cctccatcgg aggtgtaaaa 2100 atcctatcta aattacattt taaattatga aattgaaaaa taaaatcttt ggggagtttt 2160 tccctaatta ttgctaaagc agcttcagcc gaacctgcat ttagggcctc tgctgcagca 2220 tcattagctg tctgttgacc tcctctagca gatcttccat cgatctgaaa ctcaccccag 2280 tcgatgtaat cactgtcctt ctcgatgtag gacttgacat cagagctgga ctttgctccc 2340 tggaagtttg ggtggaattg ggaggagtta ttaggatgag tgacatcgaa atgtctgggg 2400 tttctgaatt tggctttacc tttgaactgg atgagggcat ggatatgcag agacccatct 2460 tggtgttttt cttgtgccac tctgataaat aatttatcag atgggcaatt tattgactga 2520 agaatctcga gcatttgctc tttgggtatt gggcattttg gataagtgag gaagatattt 2580 ttggcattaa cacaaaaaga gttaatacga ggcatattga attggggaca ctcaaaactc 2640 tgaggaatgg gggactctgg ggacgcattt atatggtgtc cccaaatggc atatttgtaa 2700 ttttgaaaaa tgctttaatt caaaattcaa aattcccaaa gcggccatcc gtataatatt 2760 //