ID FN597051; SV 1; linear; genomic RNA; STD; VRL; 4152 BP. XX AC FN597051; XX DT 20-NOV-2011 (Rel. 110, Created) DT 28-AUG-2015 (Rel. 125, Last updated, Version 2) XX DE Tobacco bushy top virus complete genome, isolate YYJi XX KW complete genome. XX OS Tobacco bushy top virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-4152 RA Li F.; RT ; RL Submitted (20-NOV-2009) to the INSDC. RL Li F., Phytopathology, Yunnan Agricultural University, Key Laboratory for RL Plant Pathology of Yunnan Province, 650201, CHINA. XX RN [2] RA Li F., Yin C.X., Qin X.Y., Chen H.R.; RT "Complete nucleotide sequence and genome organization of YYJi isolate of RT Tobacco bushy top virus"; RL Unpublished. XX DR MD5; 35746146d932c5e1f31c0ae5d87ff0bc. DR EuropePMC; PMC4514990; 26209518. XX FH Key Location/Qualifiers FH FT source 1..4152 FT /organism="Tobacco bushy top virus" FT /isolate="YYJi" FT /mol_type="genomic RNA" FT /country="China:Yunnan, Yuxi, Yuanjiang" FT /db_xref="taxon:184020" FT 5'UTR 1..10 FT CDS join(11..952,952..2607) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF1-ORF2" FT /db_xref="GOA:A0A0K6S5N7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A0A0K6S5N7" FT /protein_id="CUC08880.1" FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKSIAREVAAKCPPEDPVPESLQGPQPV FT PLDKSPERSSQDAEREALDEIWGLPTPEPHPLPRYFERRYQALARTCQKDYTNWQIIPY FT TGGPRVLGEEDVLPMATGVIPLPPPPPKASVVGAILGLSTRFTKVAGEVKGRLSAPPRE FT PSPTCIGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFLLGDVVARRGVETKVKTKIHPKIRVL FT RAARPRPVERVSYQIDVVRPCADFGVHNNSLNNLVRGVNERVFYTDHKRKEPRRPSAGS FT FDKIDISEIKAFRVQPWTLGEVVDSYTGSQRVRYGQAVESLAVTPLSRNDARVKTFVKA FT EKINFTAKPDPAPRVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVE FT TGEIVAKKWKCFSDPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGREVNKLLSWMYK FT NHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMNNGDDC FT IVIFDRQYLSTFQDAVEPWFKELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHI FT SSIAKDCCSVIDWEQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGA FT WKNEGLAWYRMGMDLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKR FT ARVCKPGEMVLVDSLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC" FT CDS 11..958 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:G7Z180" FT /protein_id="CBH71320.1" FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKSIAREVAAKCPPEDPVPESLQGPQPV FT PLDKSPERSSQDAEREALDEIWGLPTPEPHPLPRYFERRYQALARTCQKDYTNWQIIPY FT TGGPRVLGEEDVLPMATGVIPLPPPPPKASVVGAILGLSTRFTKVAGEVKGRLSAPPRE FT PSPTCIGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFC" FT CDS 2757..3470 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:G7Z183" FT /protein_id="CBH71322.1" FT /translation="MSTIINVNTHPQGRYERGAAQRSIRGSDVKGARGIKPRRSNPPPG FT RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREDCGGVHAPHTGRCWRGGRNL FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRGEL FT RRRREPVQSAHNVGAEGRVRSTQLLDEAPKVSTDLPAPGEGQSVLPNPNSGGTEKCDVE FT SVCNNCDRAPTTNKW" FT CDS 2773..3507 FT /product="hypothetical protein" FT /note="ORF4" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:G7Z181" FT /protein_id="CBH71323.1" FT /translation="MSTLIHKADTKEELLNALYGEVTLRELEESNLGVLTPHRAENKVV FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKIVVVFTPHIPDDAGGEVEIWVHDNM FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS FT PFSLHIMWEPKVECVAHNYLMRPPKSVPICRHLVKDSLSSLTLTQGALRSAMSNRYATT FT ATGLPPLTSGEQDKEVVSQPPG" FT 3'UTR 3508..4152 XX SQ Sequence 4152 BP; 988 A; 1071 C; 1217 G; 876 T; 0 other; aggttacgat atggagttca tcaacaagat aaagcaattg ttggcaatga atttcaagcc 60 ctcaaagggc gtaatgtctc gggaggagct ccgtgaagct ttcgatccca cttgggagct 120 cctcatcaca caggctcgtg tcaccactga ggtgtcacgc cagtgtgagg attggtacac 180 tctagctgta cccaccacct accgcttgcc agagttggcg gtagaagagg ctgtgcgcga 240 gaagagtata gcgcgagagg tggcggccaa gtgcccccct gaggacccgg ttcctgaatc 300 cctgcagggg ccacagcctg ttcccttgga taagagcccc gagcgctcta gccaggatgc 360 cgagcgtgag gcgctcgatg agatatgggg gctccctact cctgagccac accccttgcc 420 caggtatttt gagcggcgtt accaggcgct ggcccggacc tgccagaagg actacaccaa 480 ttggcagatc ataccttaca cgggtgggcc tcgcgtgttg ggggaggaag acgtgctgcc 540 aatggctacg ggggttatac ccttgccccc gcccccccct aaggcttccg tggttggggc 600 tatattgggg ctgtctaccc gcttcaccaa ggtggcgggg gaagtgaagg gcaggctgag 660 cgcaccgccg cgggagccct cgcccacttg cattggctta gagcaggtgg ctggtgagcc 720 catgggctac atgaatgcac actctgtagc catggagttg cgggctaggt acggagtcca 780 gcccgccaca gctgcgaact tgcagcttgg aaaccgggtg gccagggaaa tcctggaaaa 840 acagtgcggg gccacccgcg acatggtgtt catactcggg cacctcgcca ccaccttgtg 900 gttcaccccc actatggtgg acttggccct tcaatgtggg cccaaggatt tttgctaggg 960 gatgtggtcg ctcggagggg tgtagagaca aaagtgaaga cgaaaatcca ccccaaaatc 1020 cgagtgctta gggcggctcg tccccggccc gtggaaagag tgtcgtacca aatcgacgtg 1080 gtgcggccct gtgctgactt tggagtccac aacaactccc tcaacaattt agtgcgaggg 1140 gttaatgagc gggtgttcta cacagaccac aaaaggaaag agcctcgcag accttcagct 1200 ggtagtttcg acaagatcga tatcagcgag ataaaagcgt tcagagtcca gccgtggacc 1260 ctcggggagg tcgttgatag ctacacgggt agccagagag tgcggtatgg acaagctgtt 1320 gaatccttag cagtaacgcc cctctcacga aacgacgccc gggtcaaaac atttgtaaag 1380 gcggaaaaga taaacttcac cgccaagccc gacccggctc ctcgcgttat ccagccgcgg 1440 gatccaaggt tcaatgcctg ctttgccaaa tacacaaagc ccttggaacc cctcctatac 1500 aagcagctgg gtaagcttta ccagttccca tgcatcgcaa aaggctttaa cgccgtagag 1560 accggagaga tagtagccaa gaagtggaag tgcttcagtg accctgtctg tgtgggttta 1620 gatgcctccc ggtttgacca gcatgtgtca tgcgatgcac tacggttcac ccatagcgtg 1680 tacaaacggt tcgtgaaggg cagggaagtg aacaagttgc tttcctggat gtacaaaaac 1740 cacgctttgg gaagtgcgaa ggacggattc gtcaagtacg aggtggaagg ttgtcggatg 1800 agtggggata tggatacagc cttagggaat tgtgtcctga tggtcctcat gactaggcag 1860 ctatgcaaga acctctccat accgcacgaa ctgatgaaca acggcgacga ctgcatagtt 1920 atattcgaca ggcagtacct gtcaactttt caggatgcag ttgagccttg gtttaaggaa 1980 ctagggttta caatgaaggt cgaggagcca gtctaccatc tcgaacgagt agacttttgc 2040 cagacccgtc ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata 2100 gcgaaggatt gctgttcagt cattgactgg gaacagttac cggcttggtg gaacgccatt 2160 ggagaatgtg gcattgccgt ggctggtggt atacccatac acaacagctt cttgagatgg 2220 ctcctgagat caggtgagag caaccctgat ctcctgaagc atggcgcatg gaaaaatgag 2280 ggcctagcgt ggtaccggat gggcatggac ctatcccatg agagacacgt tagtgatgaa 2340 gcgcgcgcca gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag 2400 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag agtgtgtaaa 2460 cctggtgaaa tggtattggt tgattcactc ccgccgcggc actttaatga ttacttccag 2520 gatgtcggaa taggggggag tagtagtgat tacgttgtcc cggggaccca cgagtttgaa 2580 ccggggacgt tgtggactca atgttagtcg attaagttag ccaggcatat ggttgcaagc 2640 gctggggact tagtccatag agccactggt aaagagcctc cagtgggcag gcccgccttg 2700 atgagtatta gcgagtggac acccgggtag ccgcggacaa tgcccgacgg gtttcaatgt 2760 ctacgatcat aaatgtcaac actcatccac aaggcagata cgaaagagga gctgctcaac 2820 gctctatacg gggaagtgac gttaagggag ctcgaggaat caaacctcgg cgttctaacc 2880 ccccaccggg ccgaaaacaa ggtggtaatg accccactgc tgccacccag aagtcaagga 2940 agaatcgcca gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc 3000 atagagaaga ttgtggtggt gttcacgccc cacataccgg acgatgctgg cggggaggta 3060 gaaatctggg tccacgacaa catgctacca cacctaaaca gcgttgggcc ccgcgtaaga 3120 tttccgatga gcggagggcc caggttgata gcattttatc ccccctactc gataccctta 3180 agttgtcaag tgaggggggc gccccggagc tacttcattg tatcggagta ctccggggtg 3240 aacttcgtcg caggcgcgag cccgttcagt ctgcacataa tgtgggagcc gaaggtagag 3300 tgcgtagcac acaactactt gatgaggccc ccaaagtcag taccgatctg ccggcacctg 3360 gtgaaggaca gtctgtcctc cctaacccta actcaggggg cactgagaag tgcgatgtcg 3420 aatcggtatg caacaactgc gaccgggctc ccaccactaa caagtggtga gcaagataag 3480 gaggtagtgt cccaacctcc aggctgaaat ggacacaaaa cggagctaga tttagtgttg 3540 caattgctag accgttagcc actacgctag acagtgcgat aactgaggtc gtctatgacc 3600 cacagggtgc catcctgtgc aatttctaac ccttggcagg ggtgatccta gaggacgcgg 3660 gcattgactt gcctggggat gcttctagtt acataccgga gtggttgata gacctctgtg 3720 taaggaaaca ggtgtgagac tggatcctgg gaaacaggct gggatggtcc cgtaagttcg 3780 ggcggtgccc ttcgggggta accccaccgc cgacgtatca cctcacacgc tgttgaccga 3840 taagccgagg ttttggaacc gcaccactct ggaggttccc tctccttatg aggtggaggc 3900 acagcacgcc ttaagtgtct gcgatccggt gttcacgtgc cggtggtccc cctagttaac 3960 gtggtgccac agtctgtggt aggggcagct ggtcggattc cagcaaaaac caagtagcaa 4020 gtggacgttg ctacctcgag cctagagtca tgggcccgca tcgacgtttg cggtaactca 4080 cagcgggcga taatagctgt tgagaatgtc ggttcctgac ttagcgggag atgagcactt 4140 tctctcgcgc cc 4152 //