ID FN563993; SV 1; linear; genomic RNA; STD; VRL; 3167 BP. XX AC FN563993; XX DT 18-NOV-2010 (Rel. 106, Created) DT 18-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus segment 5, isolate HN, complete DE segment, genomic RNA XX KW complete viral segment, complete genome. XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3167 RA Adams M.J.; RT ; RL Submitted (04-NOV-2009) to the INSDC. RL Adams M.J., Rothamsted Research, Department of Plant Pathology and RL Microbiology, Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX AGRICOLA; IND44448932. RA Wang Q., Yang J., Zhou G.H., Zhang H.M., Chen J.P., Adams M.J.; RT "The Complete Genome Sequence of Two Isolates of Southern rice RT black-streaked dwarf virus, a New Member of the Genus Fijivirus"; RL J. Phytopathol. 158(11-1):733-737(2010). XX DR MD5; 4bef7b68282c81048f0a197f3ee8ba65. XX FH Key Location/Qualifiers FH FT source 1..3167 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="5" FT /isolate="HN" FT /mol_type="genomic RNA" FT /country="China:Hainan, Dongao city" FT /collection_date="2003" FT /db_xref="taxon:519497" FT CDS 16..2835 FT /product="P5" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:E4WKW8" FT /protein_id="CBH31255.1" FT /translation="MTYLKVKMTTDPFEMFLKKVVFNPTNEIRILNHEQADNTLLTTLM FT IIHDFEDTPTRDSILPQIVNEEKAEFDRTIESILEEVSDAFVANYHKILEENAKLGNPL FT APNYKNVVSVETCIPGLEKLFVDRERWELFTRLYRLDRKMSQKYPLEKMLKGNFLNISI FT SDETYYEYVSAMIIVFEVFLCVITVNSDYGGLIFSVLNLMSGGHNYIPILGLLLHAIVQ FT AVKIYLDKSAANQIEEKTTSYVDKVTNNDVKDVMIDDTMFIFVDKPKEPIFQNFDISLK FT VHTHKSFAFQPFKTGFNALLTKIIRIHKIKGEILKVGYIDGISRDELIGASGKKLSYFE FT RHAIGIKYDQETKTLFISHPILRDAFERLNKLSLLHDNLLLKDDFANIPSDFFTVDFNE FT PDSVSDYVVPFLNNADLKFSTQMSYNWRSINTEKRPYCFLKEGTSMNFYDPIFECFFPN FT HFIKIVKKDAITIDPTKVVTEDDMIHFGRLVERHEDLTYNKTTAYSILKFLNENCHSCG FT CSEYFANFVSDYLTSIDVLNHMKDSKLSKVEYHLKQEYENLFKKTKRQELSKTPIAEHS FT DFLSQCAYNESFFDIDFCFLEDGDCHSLVIRFAKRKPYFRFKDKKLEKLNVLSLYDLVV FT NCNHGELSSSSRVGWNLVDIDNMGSDDNLNRTIRRTNSKPRHFTYDLMMITFTGSVTQY FT LIPEWLGESLTVYEEKHEGARLFEKSSLFSTLSCIPATFLANHILIECLEKSSNKLISF FT MDGVISAMSTSIEFSTFKNTMLNNLKRCTQASEMNVAKQSPIAGTSKNKSFRSYLRSSR FT PNHVYDALSYCISKKQNGLFTSEEMCMSYNLRSFGKVGVDYSNGELSYDISSREELYNN FT HPCALRLRNLGHFVFGKHFRCKVCRNNYGTSFELSLCQLGHQETAIEAVRSNTITSQIR FT AKLQPTTAR" FT CDS 2459..3076 FT /product="hypothetical protein" FT /note="ORF5b" FT /db_xref="UniProtKB/TrEMBL:E4WKW9" FT /protein_id="CBH31256.1" FT /translation="MSMTRCPIVSPRNRTGCSHQKKCACLIISDHLEKWELTIATVNCH FT MISRQEKSCTTIIPVRFDLEISDILSLENILDAKYVATITELALNFPCVNWDIKKQQLK FT QFDPTQSLVKLEQNFNQLQRDDKLHFNCCYNYPTLHILNRILNVSKDVIPFLFDHNHNA FT NNKTMSDLSSTLNNCRDMKVSERHHLLGTLLFGSTLGVILHV" XX SQ Sequence 3167 BP; 1000 A; 620 C; 568 G; 979 T; 0 other; aagttttttt cactcatgac atatttgaaa gtgaagatga ccacagatcc tttcgaaatg 60 tttttgaaaa aagtggtttt caacccaacg aacgaaattc gaattctcaa ccacgaacaa 120 gcagacaaca ctcttttgac cacactgatg attattcacg actttgaaga cacccccact 180 cgtgactcaa ttttgcccca aattgtcaat gaagaaaaag ccgaattcga ccgaactatt 240 gaatccattc ttgaagaagt tagcgatgcc tttgttgcta attatcacaa aattctcgaa 300 gaaaacgcga aattgggtaa ccctcttgct ccaaattaca aaaacgtcgt gtctgtagaa 360 acatgtattc caggtcttga aaaacttttt gttgatcgcg aaagatggga actgtttacc 420 cgtttgtatc ggctagatcg aaaaatgagt caaaaatatc ctctagagaa gatgctaaaa 480 ggcaatttcc ttaacatttc catttccgac gaaacttatt atgagtacgt ttccgctatg 540 atcatagttt ttgaagtgtt tctttgtgtt ataactgtca acagtgatta cggtggcttg 600 atctttagtg ttttgaactt gatgagcggc ggacataact acattcctat tcttggccta 660 cttttacatg ctattgttca agctgtaaaa atttatttgg ataaatcagc tgcgaatcaa 720 attgaagaaa agactacttc ctacgtagac aaagtgacaa acaacgacgt taaagacgtt 780 atgattgatg acaccatgtt tatttttgtt gataaaccga aagaaccaat attccaaaat 840 tttgacatca gtctaaaagt tcatactcac aaatcatttg cttttcaacc ttttaaaacc 900 ggtttcaatg ctcttttaac taaaatcatt cgtattcaca aaatcaaagg tgaaattctc 960 aaagttggtt acattgatgg aatcagtcgt gacgaattga ttggcgcatc aggaaagaaa 1020 ctctcgtatt ttgaaagaca tgccattgga attaagtatg atcaggaaac caagacattg 1080 ttcatcagtc accccatttt acgagatgct tttgagcgtt tgaacaagct ttcgctattg 1140 catgataacc ttctgttgaa agacgacttc gctaacattc cgtctgattt tttcactgtt 1200 gattttaatg agccagattc tgtcagtgat tacgtagttc ccttcttgaa taatgctgat 1260 ttgaagtttt ccactcaaat gtcttacaac tggagaagca ttaacacgga aaaaagacct 1320 tactgcttct tgaaagaagg aactagcatg aacttttacg atccaatttt tgaatgcttt 1380 tttccaaacc atttcatcaa aattgtcaaa aaagacgcaa ttaccattga tcctacgaaa 1440 gttgtaactg aagatgacat gatccatttt ggacggttgg ttgaaagaca tgaagatttg 1500 acgtacaaca agactactgc ttattccatt ttgaaatttt tgaatgaaaa ttgccacagt 1560 tgtggttgtt ctgaatattt cgccaatttc gtttctgatt acttaacatc aatcgacgtt 1620 cttaatcaca tgaaggattc aaaattatca aaggtcgaat atcatctcaa gcaggaatac 1680 gaaaacttgt tcaagaagac aaaaagacaa gagctttcaa aaacgccgat tgctgaacat 1740 tcagatttcc tctctcaatg cgcatataac gagtctttct tcgatatcga tttttgcttc 1800 ctggaagatg gtgactgtca ttcactcgtc attcgattcg ctaaacgcaa accttatttt 1860 cgcttcaaag acaaaaaatt ggaaaagctc aacgttttgt ccctgtacga tcttgttgtg 1920 aattgtaatc acggagaact ttcttcatct agcagagttg gatggaattt ggttgacatt 1980 gacaacatgg gatcagatga taacctcaat cgtaccattc gtcgaactaa cagtaaacca 2040 cgccatttta cttacgatct aatgatgatt accttcactg gctcagtcac acaatacctc 2100 atacctgaat ggcttggaga aagtttgacg gtttacgaag aaaaacatga aggcgctcgt 2160 ctttttgaaa aatctagctt gttttcaact ttaagctgca ttccggcaac gtttttagca 2220 aatcacatac taatcgaatg tttagaaaaa agctcgaaca aactgatttc tttcatggat 2280 ggtgtgatca gtgccatgtc cactagcatc gaattctcga ctttcaaaaa taccatgctc 2340 aacaacttga aaaggtgtac acaggcttct gagatgaacg ttgcgaaaca gtctccaatc 2400 gcaggaacta gcaaaaacaa gtcttttcgt tcctatttac gatcttctcg accaaaccat 2460 gtctatgacg cgttgtccta ttgtatctcc aagaaacaga acgggttgtt cacatcagaa 2520 gaaatgtgca tgtcttataa tctcagatca tttggaaaag tgggagttga ctatagcaac 2580 ggtgaattgt catatgatat ctcgtcaaga gaagagctgt acaacaatca tccctgtgcg 2640 cttcgactta gaaatctcgg acattttgtc tttggaaaac attttagatg caaagtatgt 2700 cgcaacaatt acggaactag ctttgaactt tccctgtgtc aattgggaca tcaagaaaca 2760 gcaattgaag cagttcgatc caacacaatc actagtcaaa ttagagcaaa acttcaacca 2820 actacagcgc gatgataagc ttcattttaa ttgttgttat aattatccta ctttacacat 2880 attaaaccgt attttaaatg tttctaaaga cgtaattcca tttttatttg atcacaatca 2940 caacgctaac aataaaacga tgtctgactt atcttctacg cttaacaatt gtcgtgatat 3000 gaaagtttct gagagacatc acttacttgg aactttactt ttcggaagca cgctaggagt 3060 tatacttcat gtttgagggt gtgttatccc tggctgcaag cgggaggcgc gtgaacaggt 3120 gttccacgtc ttcttagatg cgggggggag tgaatacagc tgatgtc 3167 //