ID FN563991; SV 1; linear; genomic RNA; STD; VRL; 3618 BP. XX AC FN563991; XX DT 18-NOV-2010 (Rel. 106, Created) DT 18-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus segment 3, isolate HN, complete DE segment, genomic RNA XX KW complete viral segment, complete genome. XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3618 RA Adams M.J.; RT ; RL Submitted (04-NOV-2009) to the INSDC. RL Adams M.J., Rothamsted Research, Department of Plant Pathology and RL Microbiology, Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX AGRICOLA; IND44448932. RA Wang Q., Yang J., Zhou G.H., Zhang H.M., Chen J.P., Adams M.J.; RT "The Complete Genome Sequence of Two Isolates of Southern rice RT black-streaked dwarf virus, a New Member of the Genus Fijivirus"; RL J. Phytopathol. 158(11-1):733-737(2010). XX DR MD5; 1d9915ba95049fe4073946f7a126067d. XX FH Key Location/Qualifiers FH FT source 1..3618 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="3" FT /isolate="HN" FT /mol_type="genomic RNA" FT /country="China:Hainan, Dongao city" FT /collection_date="2003" FT /db_xref="taxon:519497" FT CDS 34..3543 FT /product="P3" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:E4WKW6" FT /protein_id="CBH31253.1" FT /translation="MDPVQVIKYLLSQNYETKLQQLEQWQQQMQAAGFTTEYLQRSSNV FT LNIRRRIEESSGRLFEISAKLWQGSLFTKTISPNNLFLGFSECSGVNKSLFDSKNCDFG FT RFSLNFHCIPKYWILSGIFNDLVCYDHHNVKVTVSKSSNKISFRINDFIYIVPTISNFS FT FLSDNPDIKIDENCAFDVFVRIFQSLSDVVIDVCNFTFDDELLNVEWKNTIIRFAGDAN FT YFSVSSNLIFNSIDDYLGRKCTSMRDYFCYAISMNNLEMINDSLNNWESKQLSHKKNLV FT NSLHQMNLNSMIKISSLEKEVARVKTLKISLSYPRTICLHIPTHKLFINKYSHDLFSSV FT FKTQFVGWNFTYGERDRTVEPFICDVETKLKTNSSIVSTASTSHFQCNDFGSPDNMFLL FT NVLDKDGNVKKVICEAVFSLKYKEFKYLGVKSLDEKTGYQSQVYFFGLSEIRLYTENPK FT LQVLSLVSEHEGKLCHVFYATTSLILSFKILAENIEYLGVTSPQFTSEFSYNGKPLKLS FT GKLTLSEEFDGAQRRKCLTSEEFVLNEDVKCVFTSFICNGQRSTTKTFYNNKPWPGIRS FT RYHDNDSYSSAIQATCHTLILNSPFRAYNNYSDILYSANDNVHYVEADGCFTERKNYLY FT WEVPISKFDMIYDDDPCVKLSNKSILTIPVTYRAFFEEVEGKFHPCLLSEVHYIDDYSV FT TQAGDAPELFLPFNKPVDIIYMEQSDGDEVSGELKIISFDVKDFNAYVLPENLNTTMNI FT VGRLLDYESELELVYQTNNVLSDMMNNFEKRLSDLEKFCAFLEKSYNKKSGDSSSLYHL FT LGDVFTFVGEICVLQFPILGFCFILTGIMVDALGKITQEDIFDGISEIAFGGLLLCLGK FT RKPKFAYLQELGLDRRRASSNSYISDLASSIGRRRSYSSYHRYESINELSPSLSIKDRI FT FNQIRAHNPSVFDLHHNSGIILELKQRQKDNYSLLNSSYSRMKRSIGSVSHDDNLDYKL FT SCNNPESCELYELIVTTFDYYPILLNDNSFLIIKVQFKMRITSKPIMMKIEDIMFKYFH FT TSDSLGFNVFDESKYNDVKHLYDYFFRFSFDEIFNYLCVLSLLSKTSSFDNILVENFDK FT IYDTLYLTNHNSYIKNDAIHLRQVDSTIYKTMHGHSFSDQVPNESYFKMISTIVSHPEI FT LRF" XX SQ Sequence 3618 BP; 1185 A; 555 C; 602 G; 1276 T; 0 other; aagtttttat ccatgtcttt gaattgaaca gggatggatc cagtacaagt catcaaatac 60 cttttgtctc aaaattatga aaccaaatta caacaactcg aacaatggca acaacaaatg 120 caagcagcag gcttcacaac agaatactta caacgatctt cgaacgtgct aaacattaga 180 cgcagaattg aagaatctag cgggcgttta ttcgaaatca gtgctaaact atggcaaggt 240 agtctattta ctaaaaccat ttctcctaat aatttatttc tcggcttcag tgaatgctca 300 ggagtgaaca aatcgctttt tgattctaaa aattgtgatt ttggaagatt cagtttaaac 360 tttcattgca tacctaaata ttggatatta tctggaatat ttaatgattt agtttgttat 420 gatcatcata atgtcaaagt cacagtaagc aaatcgtcaa ataaaatatc atttagaata 480 aatgacttta tttacatagt tccaaccata agcaacttct catttttatc tgacaatcca 540 gatatcaaaa ttgatgaaaa ctgcgcattt gacgtatttg tacgaatttt tcaatcatta 600 agcgatgttg ttatagacgt ttgtaatttt acatttgacg atgaattatt gaatgttgaa 660 tggaaaaaca caatcattcg ttttgccggc gatgctaact atttctcagt ttcttcaaac 720 ctcattttca atagtattga cgattattta ggtagaaaat gcacttcaat gagagattat 780 ttttgttacg caattagtat gaataacctg gaaatgatta atgactcctt aaataattgg 840 gaatccaaac aactgtcaca taaaaagaat ttagtaaaca gtcttcatca aatgaatctt 900 aattcaatga ttaaaatttc ttctttggaa aaggaagttg ctagagttaa gacgttaaaa 960 atatccttaa gttatcctcg tacgatttgt ttgcacattc caacgcataa gctttttatt 1020 aataagtatt ctcatgactt attttcttca gtttttaaga ctcaatttgt tggttggaat 1080 tttacatatg gtgaaagaga tagaactgtt gaacctttca tttgtgatgt tgaaacaaaa 1140 cttaaaacga attcttccat agtaagtaca gcatcaactt ctcactttca atgtaatgat 1200 tttggcagtc ctgataacat gtttttgcta aatgttttag ataaggatgg taacgttaaa 1260 aaagtaattt gcgaagctgt gttttcatta aagtacaaag agtttaaata tctgggagtt 1320 aaatctctcg atgaaaaaac aggatatcaa agtcaagttt atttctttgg tttgagtgaa 1380 attaggcttt atactgaaaa tccaaagttg caggttcttt cattagtgag tgaacatgaa 1440 ggtaaattat gtcatgtatt ttatgcaact acttctttaa ttttatcttt caaaattctg 1500 gctgaaaata tcgaatattt aggagttacg tctcctcaat tcacaagcga atttagttat 1560 aatggcaaac cattgaaact tagtgggaaa ttaactttaa gtgaggaatt cgatggagct 1620 caaaggagga aatgcttgac ttctgaagaa tttgttttaa acgaagatgt taaatgtgtg 1680 ttcacctcat ttatatgtaa cggtcaacgc tcgacaacca aaacattcta taacaacaaa 1740 ccttggcctg gtattcgtag cagatatcac gataatgatt cttattcaag cgccattcag 1800 gcgacctgtc acactttaat cttaaattca ccttttcgtg cttataataa ttatagtgat 1860 atattatact cggcgaatga taatgtacat tatgttgaag cggatggttg ctttactgaa 1920 aggaagaatt atctctattg ggaagttcca atttcaaagt tcgacatgat ctacgacgat 1980 gatccttgtg ttaagttgtc aaacaaaagc attctcacca ttccagtaac atatcgcgct 2040 ttctttgaag aagtggaagg taaatttcac ccttgtcttt tatctgaagt acattatata 2100 gatgattatt ctgttacgca agctggtgat gctccagaat tatttcttcc tttcaataaa 2160 ccagttgata ttatttacat ggaacagtct gacggggatg aagtcagtgg agagttaaaa 2220 attatatctt ttgatgtaaa agactttaac gcttatgttt tacccgaaaa tctaaatacc 2280 actatgaata ttgtaggaag gttgttagat tatgaatctg aattagagct agtataccag 2340 actaataatg tcttgtctga tatgatgaat aatttcgaaa aacgattatc tgacttagaa 2400 aaattttgcg ccttcctcga aaaaagttat aacaaaaaat cgggtgattc ttcttctttg 2460 tatcatttgt taggtgacgt tttcaccttt gttggtgaaa tttgtgttct tcaatttcct 2520 attttagggt tttgtttcat tttgactggt ataatggttg atgctcttgg aaaaattact 2580 caggaggata tattcgatgg gattagcgaa attgcgtttg gaggcttact actttgttta 2640 ggtaaaagga aacctaaatt tgcatatctt caagaacttg gtttagatag acgacgtgct 2700 tcctcgaatt cttacattag tgatcttgca tcttctatcg gacgtagaag aagttattct 2760 agttatcata ggtatgaaag cattaatgaa ttgagtcctt ctctttctat aaaagaccga 2820 atttttaatc aaattcgagc acataatcct agcgtgttcg acttgcatca taactcaggt 2880 atcattttag aattaaagca aagacaaaaa gataattatt ctctcttaaa ctccagttat 2940 tcgcgtatga agagatctat tggtagtgtg tctcacgatg ataatctcga ttataagtta 3000 tcatgtaata atccagaatc atgtgaattg tatgaactga tagttactac ttttgattat 3060 tatccaattc tattaaatga taactctttc ctgatcatca aagtccagtt taaaatgaga 3120 attacttcca aacctattat gatgaaaatt gaagacatta tgttcaaata ttttcacact 3180 agtgattctc ttgggtttaa cgtttttgat gaaagtaaat ataatgatgt taaacatctt 3240 tatgattact tttttagatt tagttttgat gaaatattta attatttgtg tgtcttaagt 3300 ttattatcta aaacaagctc atttgataat atcctagttg agaatttcga taaaatttac 3360 gacacccttt atctcacgaa tcataattca tacataaaga acgatgctat tcatttacgt 3420 caagtcgact ctacgattta taaaaccatg catggacatt cattttcgga tcaagtacct 3480 aatgaaagtt attttaaaat gatttcaact atagtttctc atccagagat tttgagattt 3540 taaggcactt tggttagcac gcagctggtg tcttccttat gcagctgaaa ttcgacacac 3600 atgggtacag ctgatgtc 3618 //