ID FN563989; SV 1; linear; genomic RNA; STD; VRL; 4500 BP. XX AC FN563989; XX DT 18-NOV-2010 (Rel. 106, Created) DT 18-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus segment 1, isolate HN, complete DE segment, genomic RNA XX KW complete viral segment, complete genome. XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-4500 RA Adams M.J.; RT ; RL Submitted (04-NOV-2009) to the INSDC. RL Adams M.J., Rothamsted Research, Department of Plant Pathology and RL Microbiology, Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX AGRICOLA; IND44448932. RA Wang Q., Yang J., Zhou G.H., Zhang H.M., Chen J.P., Adams M.J.; RT "The Complete Genome Sequence of Two Isolates of Southern rice RT black-streaked dwarf virus, a New Member of the Genus Fijivirus"; RL J. Phytopathol. 158(11-1):733-737(2010). XX DR MD5; 41a46f0300b5fcb2c774df87189af571. XX FH Key Location/Qualifiers FH FT source 1..4500 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="1" FT /isolate="HN" FT /mol_type="genomic RNA" FT /country="China:Hainan, Dongao city" FT /collection_date="2003" FT /db_xref="taxon:519497" FT CDS 37..4431 FT /product="P1" FT /function="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:E4WKW4" FT /protein_id="CBH31251.1" FT /translation="MVERKFSRSAEICLKKFNSIQKFRQNKQQQKTNRDRTISQKEKKI FT KDRAPPPSKKEDIPTISTPISIESQSNLDEQRTSYIHLLHQKDSILDAIIEDAENIRNV FT FIGEVPLTKEIIKNRLDDISTVLNNASDLILKLFESDNGILNECVIPNDVIQKDIYSIL FT HPSEIFDYNGFGIDEVNNLAISPKIRYLPNWNIQKIRSTIDLLKNDNSPLKPVKLAHDY FT GLISNNLKRKLLIGVDRMFNKLSIQHRFGTFESQIFSCFLMKQLLTEEQCYVNLPNCVL FT KSKFQKRGIDTVCWQYLRQIILHYNGFPFYHHTHSARFGVLDSTKISIHTDLPVSCVLP FT SVLHGLLNGIVSELLCDLNSETALIYAKHLMFCSQQSTYQRQLDFKDSFRSWPKLCYDS FT IGYVLAVLYSSDMKPLEQRIEHIDSEFWMDEKEKEILETSVSQLPDYVKKFVSSSIAHC FT TDLGNIVKSRMALNNNISLSRELTNDEVTSVRLLASKNTEFLRWLTMTSTIISNFGIYN FT KTSLLLEYKKSVGTKQDVMVSKPECKISIVTKQGMNIPLINDWSKVPILNEMSELFDQN FT WKSDLIKEFEHIDDFKKRFVTFLTNKSGGQKSEEPTLSKELKGISNARVIAFALNRNDY FT HDKLKFIKMLVAYGKCAIRFQIDRRARVIVIVPNAIQSSELFLLLGFNVLKTNKKHNDK FT IAVGKQIGNLLDARVQMCNTGDVSSVKNSGDMKGMDAHTIPNLTLFLRNKMIEVLFELD FT PSKSCSNFFFSEDKEYTLKEKHPKFEEIYNRKLRGVVIHAAKCLFYMFSMNMYLEDHFF FT ADSQTVSDQTFQTGFFATSAQHTLFLSLFLLNLERKFFAKLGNKMISVMHSVMGDDVLE FT VIKNGVKFPDKVRSWLSLRKNDLAKLNYEEELSLSRMYGVFLQQAALLGVYVPYPSRMS FT LFCDERSDTTKRHTLDMIKIVMDVISAKAQRSYGIDNGLGIGYSIWSCHRSSRYIYSDF FT DKSKVSQLLEMDKTFDFNFIVSHDETEKSIRFIYPFVTVMCSPISWPMLTFVMNDISDP FT NKFITYKSKAFTSLNGDGAYMLINQMFFTSNEQHMFQFVDYVKHQSKIVELKLNSNFLN FT WEARHHWGFTFGEHLLRFKRLRHLTESRKNELGLGDIEVMVHNLNKYLDGNRVLLSFNS FT ISVLKAHKIEVPYGLMYANHNRSKIDQSLTVRTESLEERVYLDSIFLKHMLDYKTVPKD FT LEVLKTHALCSVRLRIYGDFDYACEKDGVIEPSSDAQFNIILPFLPGYHLNSAYGKLFL FT YSTLPTVHDRDISGTLGEITGSLGASFDVDAAIEFGAHVFNINPSLVDAAGTAIGIPQG FT LLNHYKNLVNAFVTNNFNLKYHSIFLNVKYFGLNGSLKHFSTFGDYSSRLVRFDLIHKL FT DRYHNVFVRDFIFAYIHELNGRRVYLDYSLHSLLLVMSRGSIKYFTSHPSQLFNPMLTL FT EFD" XX SQ Sequence 4500 BP; 1471 A; 666 C; 785 G; 1578 T; 0 other; aagttttttt cgccgaccta cgtatctcat agacaaatgg tggaacgaaa gttcagtaga 60 tctgcagaaa tttgcttaaa aaaattcaac tcaatccaaa aatttagaca aaacaagcaa 120 cagcaaaaaa ccaacagaga ccgaacaatt tctcaaaaag aaaagaaaat aaaggacaga 180 gcccctcccc cttcaaagaa agaagacatt cccacaattt ctacccctat ttcaattgaa 240 tctcaatcaa atttggatga acaaagaaca tcttacattc atcttttaca tcaaaaagat 300 tccattttag acgcaattat tgaagatgct gaaaacattc gaaacgtttt tattggtgaa 360 gtgcctttaa ccaaagaaat cattaaaaat cgactagatg acatttcgac agtgttaaat 420 aatgcgagtg atttgattct caaattattt gaatctgata atggtatttt gaatgaatgt 480 gttatcccga atgacgttat acaaaaagat atttattcca ttttgcatcc ctctgaaatt 540 tttgattata atggttttgg cattgatgaa gttaataact tagcgattag tccaaagatt 600 agatatttac ctaattggaa cattcagaaa attagaagta ctattgatct tttgaaaaac 660 gataattctc ctttgaaacc agtcaaattg gctcatgatt atggtttgat tagtaataac 720 ttaaaacgta aattattaat tggtgttgat agaatgttta ataaattaag tattcaacat 780 agatttggta cttttgaaag tcaaatattc agttgttttc ttatgaaaca attgctaaca 840 gaagaacagt gttacgtcaa tcttccaaat tgcgttttaa aatcaaaatt tcaaaaaaga 900 ggaattgaca ctgtatgctg gcaatatttg cgacaaatca tccttcatta caatggtttt 960 cctttttatc atcacactca tagtgcaaga tttggtgtgc ttgacagtac aaaaatttct 1020 attcataccg atttaccagt ttcttgtgta cttccaagtg ttttacatgg attgttaaac 1080 ggcatagttt cagaattatt atgtgatttg aactcagaga cagctttaat ttatgccaaa 1140 catttgatgt tttgctctca acaatcaact tatcaacgtc aactcgattt taaagatagt 1200 tttcgttctt ggcctaaatt gtgttatgat agtattggtt atgtgttagc tgtattatac 1260 tcttcagaca tgaaaccttt ggaacaaaga attgaacata ttgattcaga attttggatg 1320 gatgaaaaag agaaagaaat tttagaaacg agtgtttctc aattaccgga ttacgttaaa 1380 aaattcgttt cttcttctat tgcgcattgt actgaccttg gtaacattgt taaatcaaga 1440 atggctttaa ataacaacat ttctttatcc agagagctaa ctaatgatga agtaacttct 1500 gtacgtcttt tagcaagtaa aaatactgaa tttttaaggt ggttgaccat gaccagcact 1560 attatttcta attttgggat atataacaaa acttctctat tgctcgaata caaaaaatca 1620 gttggaacaa aacaagacgt tatggtgtca aaacctgagt gcaaaatcag cattgttaca 1680 aaacaaggta tgaatattcc attaattaat gattggtcta aagttcctat actaaatgag 1740 atgtctgaat tgtttgatca aaattggaag tctgatttga ttaaagaatt tgagcatatt 1800 gacgatttca aaaaaagatt tgtgactttt ctaactaata aatcaggtgg acagaaaagt 1860 gaggaaccta ctttgtcaaa agaattaaaa ggcatttcta acgctagagt gattgctttt 1920 gctctcaata ggaatgatta tcatgacaaa ctaaaattta taaaaatgtt agtggcttat 1980 ggtaaatgtg ctattcgatt tcaaattgat cgtcgtgcta gggtgattgt cattgtacca 2040 aatgcaattc aatcgagtga attattctta cttcttggtt ttaacgtttt aaaaactaac 2100 aaaaaacata atgataagat cgctgttgga aaacaaattg gtaatttatt agacgcaaga 2160 gttcaaatgt gtaatactgg agatgtcagt tccgttaaaa attctggaga catgaagggc 2220 atggatgccc atactattcc taaccttaca ttatttttaa gaaataaaat gatcgaagtg 2280 ctttttgaat tagatcctag caaaagttgt tctaatttct tttttagtga agataaagaa 2340 tacactttaa aagagaagca tccaaaattt gaggaaattt ataaccgtaa attaagagga 2400 gttgttatcc atgccgctaa atgtttattc tacatgttct ccatgaatat gtacttagaa 2460 gatcatttct ttgcagatag tcaaactgta tcagatcaaa cttttcaaac cggctttttt 2520 gcaacatcag ctcaacacac tttgttttta agtttgtttt tattaaattt ggaacgtaaa 2580 ttctttgcca agctaggcaa taagatgata tctgttatgc attctgttat gggagatgat 2640 gttttagagg ttatcaagaa tggagtgaaa tttcctgaca aggtaagaag ttggttgtct 2700 cttaggaaga atgatttagc taaattaaat tacgaggaag aattgtcgtt atctagaatg 2760 tatggagtct ttcttcagca agctgcttta ttgggagttt atgttcctta tccttcgaga 2820 atgtcattat tttgtgatga acgttctgat actactaagc gtcacactct ggatatgatt 2880 aaaattgtta tggatgtcat ttcagctaaa gctcaacgat catatggaat agataatggt 2940 ttgggaattg gctatagtat ttggagttgt catcgtagtt caagatatat ttattctgat 3000 tttgataagt ctaaagtttc gcagttatta gagatggaca aaaccttcga ttttaatttc 3060 attgtatcgc acgatgaaac agaaaagtca atccgtttta tttatccttt cgttactgtc 3120 atgtgttctc ctatttcttg gcctatgtta acctttgtaa tgaatgatat ttctgaccct 3180 aataagttta taacatataa aagtaaagct tttacttctc ttaacggtga tggtgcttat 3240 atgctaatta atcagatgtt ttttaccagc aacgaacaac acatgttcca atttgttgac 3300 tacgtcaaac atcagtcgaa aattgttgaa ctcaaattaa actcaaattt tttgaattgg 3360 gaagctagac atcattgggg ttttacattc ggagagcatt tactgcgttt taaacgtttg 3420 cgtcatctga cagagagcag aaaaaatgaa cttggattgg gagatatcga agttatggtt 3480 cataatttga ataaatattt agatggcaat cgggtgttgt taagttttaa tagtatttca 3540 gtgctcaagg ctcacaagat tgaagtgcct tacggattaa tgtacgcgaa tcataataga 3600 tcaaaaatcg atcaatcttt gactgttaga acagaatctc tcgaagaaag ggtatatttg 3660 gattctatat ttttgaagca tatgctagat tataaaactg tgcctaaaga tttagaagta 3720 ctgaagactc atgctctctg ttccgttcgt ttaagaattt atggtgattt tgattatgct 3780 tgtgaaaaag atggtgttat cgaacctagt tctgacgctc agttcaatat cattttacct 3840 tttttacctg gttatcattt aaacagtgct tatggcaaat tatttttgta ttccactttg 3900 cccaccgtgc atgatagaga tatttccggt actttaggag aaataacagg atctttaggc 3960 gcttcttttg atgtagatgc tgcgatagaa tttggtgcac atgtgtttaa tattaatcca 4020 agtttggttg atgccgcagg cactgctatt gggattcctc aaggattatt gaatcattat 4080 aaaaatttgg ttaacgcttt tgttactaat aacttcaatt taaaatatca ttccatattt 4140 ttaaacgtaa aatattttgg tttaaatggc agtttaaaac atttttctac ttttggagat 4200 tattcaagtc gtcttgttcg ttttgactta atacataagt tggatagata tcataatgtt 4260 tttgtacgtg atttcatttt tgcttatatt cacgaactta atgggcgcag agtgtatctc 4320 gattatagtt tgcatagtct gctgttagtc atgtctcgag gatctataaa gtattttaca 4380 tctcatccct ctcaattatt taatcctatg cttactcttg agttcgactg ataaggcgtt 4440 cccgattttg aaactatgaa gtgagcgtgg ttagtgtcca tggcgaaaac agctgtcgtc 4500 //