ID FN563124; SV 1; linear; genomic RNA; STD; VRL; 6517 BP. XX AC FN563124; XX DT 03-MAY-2010 (Rel. 104, Created) DT 09-MAY-2010 (Rel. 104, Last updated, Version 2) XX DE Chiltepin yellow mosaic virus, complete genome, isolate 20.8 XX KW complete genome. XX OS Chiltepin yellow mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6517 RA Pagan I.; RT ; RL Submitted (30-OCT-2009) to the INSDC. RL Pagan I., Centro de Biotecnologia y Genomica de Plantas, Biotecnologia, RL Campus Montegancedo. Autopista M40 Km38, Pozuelo de Alarcon, 28223, SPAIN. XX RN [2] RX DOI; 10.1007/s00705-010-0639-7. RX PUBMED; 20229325. RA Pagan I., Betancourt M., de Miguel J., Pineiro D., Fraile A., RA Garcia-Arenal F.; RT "Genomic and biological characterization of chiltepin yellow mosaic virus, RT a new tymovirus infecting Capsicum annuum var. aviculare in Mexico"; RL Arch. Virol. 155(5):675-684(2010). XX DR MD5; c2887b573d14cefc849b94ed4a78c524. DR EuropePMC; PMC3390404; 22792068. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6517 FT /organism="Chiltepin yellow mosaic virus" FT /isolate="20.8" FT /mol_type="genomic RNA" FT /country="Mexico:Tula" FT /isolation_source="host leaf" FT /collection_date="2001" FT /db_xref="taxon:688701" FT CDS 139..2211 FT /transl_table=1 FT /gene="OP" FT /product="overlapping protein/movement protein" FT /function="within-host movement" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:D6CFX0" FT /protein_id="CBH31041.1" FT /translation="MSNGFPTSPRRPILHHSQRCLSESSSEFRRPTSPRLSPALPLDHP FT KGTPSLPHLLRHPSLRIRNHPPPPRCPQNHRNLPSLQPLEPPRLHSLLRHVHETLKVPK FT TSSHQPKLPRAHQLPSHPRRHRSLPHHLHHSSNQRLRLHARRFDVFQPIPDRRLVSQQS FT KSGNSVLQSHLPSRVPLHRSVSLPRDLHLQDIGSNTPLCAGISSRRLIQSAPSSPVLAK FT SELHISSRDPTLSHQAGILGPRPLPPDPKRSPTFGLNPKKSSSTPRTRSPNPTGSSATK FT HCSPVPPITNNRESGVLPDPRLFGTSPGHLPSTTLKTPPGAKRGLQRPLHLYKGSPHSE FT DVGSSRLRSHSKQQAGILLGNPKRLGQSSDLRAPQLPPPPSGMLPLFLQPNRPTQTLFR FT STLASISFVSHPIPFHISTTPPLIQFQIPSPNPKATFCISQEVCIPTFAHLLPPKRNTT FT PISTDAQNPIVPKASDLSLAAEVSSNSASCEPSTPSSNPASIRVSNGNNHGTHSPPPNS FT SPSAKSDTGLSPTDNSHPAGPDSSNPARQLPSSPSSIKVSTPMESTKLSTEFSPSRIPA FT HWRPLQSFEDSIKVLTSMESSKFPSDFHSTLSPLSTSSSSPSSFLSASSPPRFPCYPTG FT YNPEIECCLSGDSCPLSTIEFEHDSTRQRALERLKTFHLDCPYGWSECDSPYSSP" FT CDS 146..5791 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /function="replication" FT /note="contains methyltransferase, papain-like FT protease,helicase and polymerase domains, and tymonbox" FT /db_xref="GOA:D6CFX1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D6CFX1" FT /protein_id="CBH31042.1" FT /translation="MAFQLALDALSSTTHRDASLNPVLNSAVQPLQDSLQHYPWIIPKE FT HLPFLISSGIPVSGFGTTPHPHAVHKTIETFLLFNHWSHLASTPSSVMFMKPSKFRKLP FT AINPNFQELINYRLTPADTVRYPTTSTTLPTNDCVFMHDALMYFNPSQIVDLFLNSPNL FT ETLYCSLICPAESHFTDLSLYPEIYTYKISGQTLHYVPESHHAGSYNQPLQALSWLKVN FT SISHPEILLSVTKLESWGPVHSLLIQRGLPPLASIPRRALPPLGRAPQTPQDHLLQNTA FT ALFHQSQTTESLVSFQIPDCLELPQATFLRQPLRHRLVPSAVYNALFTYTRAVRTLRTS FT DPAGFVRTQSNKPEYSWVTPSAWDNLQTFALLNSPHRPQVCYHFFSSPIDRLKLYFGQH FT WRAYLLFLTPFLSTSPLLLPLFNFKFPLPIPKLLSVFRKRFASPLLLTSYLPNEIQLPF FT PLMPKIQLFPKHQTCHLLQRFHRTLHRANLLPLPPILPQFEFRTATIMELIPRPRIVLP FT LLSLILASPPLITHILQAQTPQTLHDNYHLHLHPSKFLLQWNLQSFQLNSHQAEFQHTG FT GRYKALKIPSKFLLQWNLQSFQVTSTQPFLPYQLQAPPPAASSLPPARPVFHATPPVTT FT QRSNAASPATHVPCQPSSSSTTPQDREPSNASKHSIWTVPMDGPNVILPTPAPEPTPLN FT LVSSPPLENNHPIHTQQPLQSTVLPSGALTFDVASTPSTSLNSTPTPAVAKSSLADDPT FT AVGLAAPFSKLFPAEYFPLSAELPTRSRHVPSSNLPLAKNLTAYFLPSLTWTSIPISTL FT WETLQSKNPRILFFRILKVENLGLSTDILTALCYFFHCQCALHTPQGVFHYGIMTSSRK FT YRHLLRSRAPTPFLDHSTHYCLSSSLQPHPGATGASSATFQVQIDAFLPFTQAHSHTSS FT LHHAKNLISNMKNGFDGILSTIAHSNSGPSPRQRMITLDSLVDVAAPRTIPVIHIAGFA FT GCGKTLPVQHLLKTKHFHDFRVSCPTNELRSEWKRDMQPTAENLWRFSTWESSLLKTSS FT VLVIDEIYKLPRGYLDLSIIADPSLRLVIILGDPLQGEYHSTSPHSSNHFLPSEIHRFK FT SYIDCYCFWSYRIPTSFARMFGVSSFSKEPGFVRTLTTHPPNGKNLTNAINTALTLQEM FT GHHAITISSSQGTTFQEAHTILLDRHTNRLSPNNCLVALTRSKVGVYFVGNLHLASNDF FT GTNYLFSQFLAGKDVDLHQLFPYVMPYLPKLHEPIKSRSIRFVAGLINPSINFSILPRL FT SRPIHLPPHIPVDYKKDFLISNPIVAGNKIDERLDTHYLPPTRLPLHFDLPPGFPQPAT FT FSESAPQPTNPLSLGLFGFPFETLAAFFLPAHDPEIKEIIYSDQKSNPSFPLTIQRLRK FT SFTPTKKAINFLFLTDLLSSPANPLLYWHQSTLPLMIQRSFLPLYKKRLRFRASSKPYS FT ICPTDVILGQHLYFSWCSAYSRPTSQVLPFNPELFAECINLNEYAQLSSKTRSTLVANA FT QRSDPDWRYTSVRIFAKAQHKVNDSSIFSNWKACQTLALMHDYIILVLGPVKKYQRIYD FT QRERPPQIYYHCGHTPTQLSQWCSQHLQSPVATTNDYTAFDQSQHGEAVVFECFKMNRL FT PIPPHLISLHSHLKCSIETQFGPLTCMRLTGEPGTYDDNSDYNLAVIYSQYAIKSEAIM FT ISGDDSVIDGVPPINPNWSKIAPLLHLRFKTEKVRHPLFCGYYVTPVGACRDPEALFAK FT LMICIDDGSFQDKVLSYLSEFSIGHSLGDVLLQRLHPDLLIYQTAVHDCFCRRCSPSQK FT MILSLDPIPESKLLLLLRKVKWASSQFFSQLPQKARDFLTAKSQLSSFHQDPKVSQLES FT ELLLSLN" FT CDS 5795..6361 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /function="structural protein" FT /db_xref="GOA:D6CFX2" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D6CFX2" FT /protein_id="CBH31043.1" FT /translation="MEDQTASRAKQPSIPSPGFTLPKPDTQLSSAIELPFQFQATTFGA FT AETAAQVSLASSTPITKLASLYRHAQLVECHAVITPTALAISNPLTINIVWVSDNSTAK FT PTEILNVYGGSSFTFGGAITTPKPIILPLPMNSINPMLKDSGLYTDTPKLLAYSAAPSS FT PTKQPTATIQIYGKLRLSSPLLQAS" XX SQ Sequence 6517 BP; 1585 A; 2197 C; 989 G; 1746 T; 0 other; gtaatttatt cccagtctca aaaccctctt ttgagccttg aacgttttct tttcctttcc 60 gcacctccgc ttctccccgt ctccggccag aagcttttct ccaaccgatc cttcactaac 120 tgtcgccact cctaattaat gtccaatggc tttccaacta gccctcgacg ccctatcctc 180 caccactcac agagatgcct ctctgaatcc agttctgaat tccgccgtcc aacctctcca 240 agactctctc cagcactacc cctggatcat cccaaaggaa caccttccct tcctcatctc 300 ctccggcatc ccagtctccg gattcggaac caccccccac ccccacgctg tccacaaaac 360 catcgaaacc ttccttctct tcaaccactg gagccacctc gcctccactc cctcctccgt 420 catgttcatg aaaccctcaa agttccgaaa acttccagcc atcaacccaa acttccaaga 480 gctcatcaac taccgtctca cccccgccga caccgttcgc taccccacca cctccaccac 540 tcttccaacc aacgattgcg tcttcatgca cgacgctttg atgtatttca acccatccca 600 gatcgtcgac ttgtttctca acagtccaaa tctggaaact ctgtattgca gtctcatctg 660 cccagcagag tcccacttca ccgatctgtc tctctacccc gagatctaca cctacaagat 720 atcgggtcaa acactccact atgtgccgga atctcatcac gccggctcat acaatcagcc 780 ccttcaagcc ctgtcttggc taaaagtgaa ctccatatct catccagaga tcctactctc 840 agtcaccaag ctggaatcct ggggccccgt ccactccctc ctgatccaaa gaggtctccc 900 acctttggcc tcaatcccaa gaagagctct tccacccctc ggacgcgctc cccaaacccc 960 acaggatcat ctgctacaaa acactgcagc cctgttccac caatcacaaa caaccgagag 1020 tctggtgtcc ttccagatcc ccgattgttt ggaacttccc caggccacct tccttcgaca 1080 acccttaaga caccgcctgg tgccaagcgc ggtttacaac gccctcttca cttatacaag 1140 ggcagtccgc actctgagga cgtcggatcc agccggcttc gttcgcactc aaagcaacaa 1200 gccggaatac tcttgggtaa ccccaagcgc ttgggacaat cttcagacct tcgcgctcct 1260 caactccccc caccgccctc aggtatgcta ccactttttc tccagcccaa tcgaccgact 1320 caaactttat ttcggtcaac actggcgagc atatcttttg tttctcaccc cattcctttc 1380 cacatctcca ctactcctcc ccttattcaa tttcaaattc cctctcccaa tcccaaagct 1440 actttctgta tttcgcaaga ggtttgcatc cccacttttg ctcacctctt acctcccaaa 1500 cgaaatacaa ctcccatttc cactgatgcc caaaatccaa ttgttcccaa agcatcagac 1560 ctgtcacttg ctgcagaggt ttcatcgaac tctgcatcgt gcgaaccttc taccccttcc 1620 tccaatcctg cctcaattcg agtttcgaac ggcaacaatc atggaactca ttccccgccc 1680 ccgaatagtt ctccctctgc taagtctgat actggcctct cccccactga taactcacat 1740 cctgcaggcc cagactcctc aaaccctgca cgacaattac catcttcacc ttcatccatc 1800 aaagtttcta ctccaatgga atctacaaag ctttcaactg aattctcacc aagccgaatt 1860 ccagcacact ggcggccgtt acaaagcttt gaagattcca tcaaagttct tacttcaatg 1920 gaatcttcaa agtttccaag tgacttccac tcaacccttt ctcccttatc aacttcaagc 1980 tcctccccca gcagcttcct ctctgcctcc agcccgcccc gttttccatg ctaccccacc 2040 ggttacaacc cagagatcga atgctgcctc tccggcgact catgtcccct gtcaaccatc 2100 gagttcgagc acgactccac aagacagaga gccctcgaac gcctcaaaac attccatttg 2160 gactgtccct atggatggtc cgaatgtgat tctccctact ccagcccctg aacccactcc 2220 gttaaacctt gtctcatctc caccattgga aaacaatcac ccaatccaca cccaacaacc 2280 acttcagtcg actgtacttc cttcaggagc tctgacattc gacgtcgctt ccactccctc 2340 aacttctctc aactccactc caactcctgc cgtagcaaaa tcatcattgg ctgatgatcc 2400 gacagctgtt ggtttggctg ctccattctc caaactattt ccagcagaat actttcccct 2460 ttctgctgaa cttcctaccc gctcacgaca tgttccaagc tccaatttac ctttagccaa 2520 aaacttgact gcttactttc ttccttctct cacctggact tccattccaa tttcaactct 2580 atgggaaact cttcaatcga aaaatccccg gattctcttc ttcagaattc tgaaagtcga 2640 aaacctgggg ctttcaactg acattctcac cgctttgtgt tatttcttcc attgtcagtg 2700 tgccctacac accccgcagg gtgttttcca ctacggcata atgacttctt ccagaaaata 2760 tcgacattta ctacgaagtc gggcccccac cccatttctc gaccactcca cgcattactg 2820 cctcagctcc tcactccaac cccacccagg agccactggt gcgtcaagcg ctacgtttca 2880 agtacaaatt gacgcctttc tcccattcac acaggcccac agccatactt cttctctcca 2940 tcatgccaaa aatctaatct ccaacatgaa aaatggattt gacggcattc tctccacaat 3000 agcccactcc aactcagggc caagcccccg acaacgcatg atcactctag acagccttgt 3060 cgacgtggcc gctccaagaa caatcccagt tattcacata gccggttttg ctggttgcgg 3120 caaaactctt ccagttcagc atttgctcaa aaccaagcac tttcacgact ttcgtgtcag 3180 ctgccccacg aatgaactcc gttctgaatg gaaaagagat atgcaaccga cagccgagaa 3240 tttgtggcgc ttctccacct gggaatcttc ccttcttaag acttcctcag tgttggtgat 3300 tgacgaaatc tacaagcttc ccagaggcta tttagattta agtataatcg ccgacccttc 3360 cctacgcctt gtcatcatac ttggtgaccc tctccaaggc gagtatcact ccacttctcc 3420 acacagctcc aaccacttct taccttcaga aattcaccgc ttcaaatctt acattgattg 3480 ctactgcttt tggtcctacc ggatacccac ttcattcgca cggatgtttg gtgtatccag 3540 tttctccaaa gagcctggtt ttgtcaggac cctcaccacc catcctccca atggcaaaaa 3600 cctcacaaat gccataaata ctgcactcac tctgcaggaa atgggtcatc atgccattac 3660 cattagcagt agtcaaggca cgacatttca agaagctcac accatcctac ttgatcgaca 3720 caccaaccga ctttcaccaa acaattgcct ggttgcattg actcgaagca aagttggtgt 3780 atacttcgtt ggcaatctac atcttgcctc caatgacttt gggaccaatt atctcttctc 3840 ccaatttctt gctggcaaag atgtcgatct ccatcaactc tttccatatg tcatgcctta 3900 tctccccaaa cttcatgagc ccatcaagtc tcgttccatt cggttcgttg caggtctcat 3960 caatccttcc atcaatttct ccatcttgcc aagactctca agacccatcc atctacctcc 4020 ccacattccg gttgactaca agaaagattt tttgatctcc aatcccatag tcgccggcaa 4080 caaaatagac gagcgtcttg acacccatta ccttccaccc actcggctac ccctccattt 4140 tgatctccct ccagggttcc ctcaacctgc cactttttcc gaatctgcac ctcaaccgac 4200 aaatccttta tccctcggac tttttggctt cccctttgaa actctggctg cttttttcct 4260 cccagctcat gatccggaaa tcaaggaaat tatttactcc gatcaaaaga gcaatccttc 4320 cttcccgctc acgatccaga gattaaggaa atcgtttact ccgaccaaaa aagcaatcaa 4380 tttccttttt ttgaccgacc ttttgagctc tcctgccaac cctcttctct actggcacca 4440 atccactctc ccgctcatga tccaacgctc cttcctgcct ctatataaga aaaggctgcg 4500 tttccgagcc agctctaaac cttactccat ctgcccaact gatgtcatct taggccaaca 4560 tctgtacttt tcctggtgtt cagcatattc acgccccacc tctcaagtgc ttcccttcaa 4620 tcctgagttg tttgctgaat gcatcaatct caatgaatat gctcaacttt cttcaaaaac 4680 gcgttccacc ttagttgcta atgcccaacg ctcggatcct gactggcggt acacttctgt 4740 caggattttt gccaaagcac aacacaaggt caacgattca tccatctttt caaactggaa 4800 ggcctgccag acactggctt taatgcatga ctacatcatc ctagtccttg gaccagtgaa 4860 gaagtatcaa cgcatttatg atcagcgaga aagaccaccc caaatctact accattgtgg 4920 tcacactccc actcaactct cccaatggtg ctctcaacac cttcaaagcc cagttgccac 4980 caccaatgac tacactgctt ttgaccagtc tcagcatgga gaagcagtcg tctttgaatg 5040 cttcaagatg aatcgtctcc ccatacctcc tcatctaata tctctccatt cccacctcaa 5100 atgctccata gagacccagt ttggacccct tacatgcatg cgtctcactg gtgaacctgg 5160 cacctatgat gacaactcag actacaattt ggccgtcatt tactcacaat acgccatcaa 5220 atctgaggcc atcatgattt ctggagatga ctccgtcata gatggagtcc ccccaatcaa 5280 cccaaattgg agtaaaatag cgccccttct tcatcttcgc ttcaaaactg aaaaagtccg 5340 tcatcctctc ttttgtggtt actatgtaac tcctgtagga gcatgccgtg acccagaagc 5400 tctatttgct aaactcatga tctgcataga tgatggaagc ttccaagaca aagttctttc 5460 atacttgtcc gaattttcca tcggccactc tcttggagac gtccttttac agcgtctgca 5520 cccagatctt ttaatttacc aaaccgccgt gcatgactgt ttttgcagac gctgctctcc 5580 ttctcaaaaa atgatcttgt ctctagatcc tattcccgag tcaaagctgt tgctactgct 5640 gcgcaaagtc aaatgggcca gttctcagtt tttcagtcaa ttaccccaaa aagcacgtga 5700 tttcctcaca gccaagtccc agctttcatc ctttcatcaa gatcccaagg tgtcccaact 5760 agagtctgaa ttgcttctct ctctcaattg atccatggaa gaccaaactg cttcacgtgc 5820 caaacaacct tctattcctt ctcctggttt tactctgccc aagccagata cacagctttc 5880 gtctgcaatc gaacttcctt ttcagttcca ggcaactact ttcggcgcag ccgaaaccgc 5940 cgcccaagtc agtttagctt cttccacacc cataaccaaa ctggcctccc tctatcgtca 6000 tgctcagctt gtcgaatgcc acgcggttat aactcccacc gctttggcta tctccaatcc 6060 actcaccata aacatagtat gggtttctga taactccact gcaaagccca ccgaaatact 6120 gaatgtttac ggtggttctt ctttcacttt cggaggcgct atcaccaccc ccaagcccat 6180 catactccct cttccaatga attccattaa ccccatgctc aaggattcag gcctctacac 6240 tgacacccca aagcttctag catattctgc tgctcccagc tctcctacaa aacagccgac 6300 ggcaaccata caaatttatg gaaaacttcg gctatcttct cctttgctgc aggcatctta 6360 ggatgacctg tttcctcact tttccattcc aatcacaaac tcggcctcgt gccactctcc 6420 gcattatcta cggtaattga agccagtgct tcttcctcta gcacacagag gttcacttgg 6480 gtgcgactcc ccccccttcc gtgggctacg gaaacca 6517 //