ID FN563123; SV 1; linear; genomic RNA; STD; VRL; 6517 BP. XX AC FN563123; XX DT 03-MAY-2010 (Rel. 104, Created) DT 09-MAY-2010 (Rel. 104, Last updated, Version 2) XX DE Chiltepin yellow mosaic virus, complete genome, isolate 20.5 XX KW complete genome. XX OS Chiltepin yellow mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6517 RA Pagan I.; RT ; RL Submitted (30-OCT-2009) to the INSDC. RL Pagan I., Centro de Biotecnologia y Genomica de Plantas, Biotecnologia, RL Campus Montegancedo. Autopista M40 Km38, Pozuelo de Alarcon, 28223, SPAIN. XX RN [2] RX DOI; 10.1007/s00705-010-0639-7. RX PUBMED; 20229325. RA Pagan I., Betancourt M., de Miguel J., Pineiro D., Fraile A., RA Garcia-Arenal F.; RT "Genomic and biological characterization of chiltepin yellow mosaic virus, RT a new tymovirus infecting Capsicum annuum var. aviculare in Mexico"; RL Arch. Virol. 155(5):675-684(2010). XX DR MD5; d10d21d8153d1e365f89ba63ba66a60b. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6517 FT /organism="Chiltepin yellow mosaic virus" FT /isolate="20.5" FT /mol_type="genomic RNA" FT /country="Mexico:Tula" FT /isolation_source="host leaf" FT /collection_date="2001" FT /db_xref="taxon:688701" FT CDS 139..2211 FT /transl_table=1 FT /gene="OP" FT /product="overlapping protein/movement protein" FT /function="Within-host movement" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:D6CFW7" FT /protein_id="CBH31038.1" FT /translation="MSNGFPTSPRRPILHHSQRCLSESSSEFRRPTSPRLSPALPLDHP FT KGTPSLPHLLRHPSLRIRNHPPPPRCPQNHRNLPSLQPLEPPRLHSLLRHVHETLKVPK FT TSSHQPKLPRAHQLPSHPRRHRSLPHHLHHSSNQRLRLHARRFDVFSTIPDRRLVSQQS FT KSGNSVLQSHLPSRVPLHRSVSLPRDLHLQDIGSNTPLCAGISSRRLIQSAPSSPVLAK FT SELHISSRDPTLSHQAGILGPCPLPSNPKRSPPSGLNPKKSSPTPRTRSSNSTGSSAAK FT HCSFIQPITNNRESGILPNSRLLGTSSSHLSPTTLETPSGAQCGLQRPLHLHKGCSHPK FT DIRPSRFCSHPKQQARILLGDAKRLGQSTNLRAPQLPPPPSGMLPLFLQPNRPTQTSFR FT STLASISFGSHPIPFHISTTPPLIQFQIPSPNPKATFCISQEVCIPTFAHLLPPKRNTT FT PISTDAQNPIVPKASDLSLAAEVSSNSASCEPSTPSSNPASIRVSNGNNHGTHSPPPNS FT SPSAKSDTGLSPTDNSHPAGPDSSNPARQLPSSPSSIKVSTPMESTKLSTEFSPSRIPA FT HWRPLQSFEDSIKVLTSMESSKFPSDFHSTLSPLSTSSSSPSSFLSASSPPRFPCYPTG FT YNPEIECCLSGDSCPLSTIEFEHNSTRQRALERLKTFHLDCPYGWTECDSPYSSP" FT CDS 146..5791 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /function="replication" FT /note="contains methyltransferase, papain-like protease, FT helicase and polymerase domains, and tymonbox" FT /db_xref="GOA:D6CFW8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D6CFW8" FT /protein_id="CBH31039.1" FT /translation="MAFQLALDALSSTTHRDASLNPVLNSAVQPLQDSLQHYPWIIPKE FT HLPFLISSGIPVSGFGTTPHPHAVHKTIETFLLFNHWSHLASTPSSVMFMKPSKFRKLP FT AINPNFQELINYRLTPADTVRYPTTSTTLPTNDCVFMHDALMYFQPSQIVDLFLNSPNL FT ETLYCSLICPAESHFTDLSLYPEIYTYKISGQTLHYVPESHHAGSYNQPLQALSWLKVN FT SISHPEILLSVTKLESWGPVHSLLIQRGLPPLASIPRRALPPPGRAPQTPQDHLLQNTA FT ALFNQSQTTESLVSFQIPDCLELPQATFLRQPLRHRLVPSAVYNALFTYTRAVRTLRTS FT DPAGFVRTQSNKPEYSWVTPSAWDNLQTFALLNSPHRPQVCYHFFSSPIDRLKLHFGQH FT WRAYLLALTPFLSTSPLLLPLFNFKFPLPIPKLLSVFRKRFASPLLLTSYLPNEIQLPF FT PLMPKIQLFPKHQTCHLLQRFHRTLHRANLLPLPPILPQFEFRTATIMELIPRPRIVLP FT LLSLILASPPLITHILQAQTPQTLHDNYHLHLHPSKFLLQWNLQSFQLNSHQAEFQHTG FT GRYKALKIPSKFLLQWNLQSFQVTSTQPFLPYQLQAPPPAASSLPPARPVFHATPPVTT FT QRSNAASPATHVPCQPSSSSTTPQDREPSNASKHSIWTVPMDGPNVILPTPAPEPTPQN FT TTSSPPLDNNHPIHTQQPLQSTVLPSGALTFDVASTPSTSLNSTPTPAVAKSSLADDPT FT AVGLAAPFSKLFPAEYFPLSAEFLTRSRHVPSSNLPLAKNLTAYFLPSLTWTSIPISTL FT WETLQSKNPRILFFKILKVENLGLSTDILTTLCYFFHCQCALHTPQGVFHYGIMTSSRK FT YRHLLRSRAPTPFLDHSTHYCLSSSLQPHPGATGASSATFQVQIDAFLPFTQAHSHTSS FT LHHAKNLISNMKNGFDGILSTIAHSNSGPSPRQRMITLDSLVDVAAPRTIPVIHIAGFA FT GCGKTLPVQHLLKTKHFHDFRVSCPTNELRSEWKRDMQPTAENLWRFSTWESSLLKTSS FT VLVIDEIYKLPRGYLDLSMIADPSLRLVIILGDPLQGEYHSTSPHSSNHFLPSEIHRFK FT SYIDCYCFWSYRIPTSFARMFGVSSFSKEPGFVRTLTTHPPNGKNLTNAINTALTLQEM FT GHHAITISSSQGTTFQEAHTILLDRHTNRLSPNNCLVALTRSKVGVYFVGNLHLASNDF FT GTNYLFSQFLAGKDVDLHQLFPYVMPYLPKLHEPIKSRSIRFVAGLINPSINFSILPRL FT SRPIHLPPHIPVDYKKDFLISNPIVAGNKIDERLDTHYLPPTRLPLHFDLPPGFPQPAT FT FSESAPQPTNPLSLGLFGFPFETLAAFFLPAHDPEIKEIIYSDQKSNPSFQLTIRKSRK FT LFTPIKRAINFLFLTVLLSFPANPPLCWLQSILLLVIQHFFLLPYKKRLRFRASSKPYS FT IGPTDVILGQHLYSSWCSAYSRPTSQVLPFNPELFAECINLNEYAQLSSKTRSTLVANA FT QRSDPDWRYTSVRIFAKAQHKVNDSSIFSNWKACQTLALMHDYIILVLGPVKKYQRIYD FT QRERPPQIYYHCGHTPTQLSQWCSQHLRSPVATTNDYTAFDQSQHGEAVVFECLKMNRL FT SIPPHLISLHSHLKCSIETQFGPLTCMRLTGEPGTYDDNSDYNLAVIYSQYAIKSEAIM FT ISGDDSVIDGVPPINPNWSKIGPLLHLRFKTEKVRHPLFCGYYVTPVGACRDPKALFAK FT LMICIDDGTFQDKVLSYLSEFSIGHSLGDVLLQHLHPDLLIYQTAVHDCFCRRCSPSQK FT MILSLDPIPESKLLLLLRKVKWASSQFFSQLPQKARDFLAAKSQLSSFHQDPKVSQLES FT ELLLSLN" FT CDS 5795..6361 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /function="structural protein" FT /db_xref="GOA:D6CFW9" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D6CFW9" FT /protein_id="CBH31040.1" FT /translation="MEDQTASRAKQPSIPSPGFTLPKPDTQLSSAIELPFQFQATTFGA FT AETAAQVSLASSTPITKLASLYRHAQLVECHAVITPTALAISNPLTINIVWVSDNSTAK FT PTEILNVYGGSSFTFGGAITTTKPIILPLPMNSINPMLKDSVLYTDTPKLLAYSAAPSS FT PTKQPTATIQIYGKLRLSSPLLQAS" XX SQ Sequence 6517 BP; 1589 A; 2199 C; 988 G; 1741 T; 0 other; gtaatttatt cccagtctca aaaccctctt ttgagccttg aacgttttct tttcctttcc 60 gcacctccgc ttctccccgt ctccggccag aagcttttct ccaaccgatc cttcactaac 120 tgtcgccact cctaattaat gtccaatggc tttccaacta gccctcgacg ccctatcctc 180 caccactcac agagatgcct ctctgaatcc agttctgaat tccgccgtcc aacctctcca 240 agactctctc cagcactacc cctggatcat cccaaaggaa caccttccct tcctcatctc 300 ctccggcatc ccagtctccg gattcggaac caccccccac ccccacgctg tccacaaaac 360 catcgaaacc ttccttctct tcaaccactg gagccacctc gcctccactc cctcctccgt 420 catgttcatg aaaccctcaa agttccgaaa acttccagcc atcaacccaa acttccaaga 480 gctcatcaac taccgtctca cccccgccga caccgttcgc taccccacca cctccaccac 540 tcttccaacc aacgattgcg tcttcatgca cgacgctttg atgtattttc aaccatccca 600 gatcgtcgac ttgtttctca acagtccaaa tctggaaact ctgtattgca gtctcatctg 660 cccagcagag tcccacttca ccgatctgtc tctctacccc gagatctaca cctacaagat 720 atcgggtcaa acactccact atgtgccgga atctcatcac gccggctcat acaatcagcc 780 ccttcaagcc ctgtcttggc taaaagtgaa ctccatatct catccagaga tcctactctc 840 agtcaccaag ctggaatcct ggggccctgt ccactccctt ctaatccaaa gaggtctccc 900 ccctctggcc tcaatcccaa gaagagctct cccacccccc ggacgcgctc ctcaaactcc 960 acaggatcat ctgctgcaaa acactgcagc tttattcaac caatcacaaa caaccgagag 1020 tctggtatcc ttccaaattc cagattgctt ggaacttcct caagccacct ttctccgaca 1080 acccttgaga caccgtctgg tgcccagtgc ggtctacaac gccctcttca cttacacaag 1140 ggctgttcgc accctaagga catcagaccc agccggtttt gttcgcaccc aaagcaacaa 1200 gccagaatac tcttgggtga cgccaagcgc ttgggacaat ctacaaacct tcgcgctcct 1260 caactccccc caccgccctc aggtatgcta ccactttttc tccagcccaa tcgaccgact 1320 caaacttcat ttcggtcaac actggcgagc atatcttttg gctctcaccc cattcctttc 1380 cacatctcca ctactcctcc ccttattcaa tttcaaattc cctctcccaa tcccaaagct 1440 actttctgta tttcgcaaga ggtttgcatc cccacttttg ctcacctctt acctcccaaa 1500 cgaaatacaa ctcccatttc cactgatgcc caaaatccaa ttgttcccaa agcatcagac 1560 ctgtcacttg ctgcagaggt ttcatcgaac tctgcatcgt gcgaaccttc taccccttcc 1620 tccaatcctg cctcaattcg agtttcgaac ggcaacaatc atggaactca ttccccgccc 1680 ccgaatagtt ctccctctgc taagtctgat actggcctct cccccactga taactcacat 1740 cctgcaggcc cagactcctc aaaccctgca cgacaattac catcttcacc ttcatccatc 1800 aaagtttcta ctccaatgga atctacaaag ctttcaactg aattctcacc aagccgaatt 1860 ccagcacact ggcggccgtt acaaagcttt gaagattcca tcaaagttct tacttcaatg 1920 gaatcttcaa agtttccaag tgacttccac tcaacccttt ctcccttatc aacttcaagc 1980 tcctccccca gcagcttcct ctctgcctcc agcccgcccc gttttccatg ctaccccacc 2040 ggttacaacc cagagatcga atgctgcctc tccggcgact catgtcccct gtcaaccatc 2100 gagttcgagc acaactccac aagacagaga gccctcgaac gcctcaaaac attccatttg 2160 gactgtccct atggatggac cgaatgtgat tctccctact ccagcccctg aacccactcc 2220 acaaaacact acctcatccc caccactgga caacaatcac ccaatccaca cccaacaacc 2280 acttcagtcg actgtacttc cttcaggagc tctgacattc gacgtcgctt ccactccctc 2340 aacttctctc aactccactc caactcctgc cgtagcaaaa tcatcattgg ctgatgatcc 2400 gacagctgtt ggtttggctg ctccattctc caaactattt ccagcagaat actttcccct 2460 ttctgctgaa ttcctcaccc gcagtcgaca tgttccaagc tccaatttac ctttagccaa 2520 aaacttgact gcttactttc ttccttctct cacctggact tccattccaa tttcaactct 2580 gtgggaaact cttcaatcga aaaatccccg gattctcttc ttcaaaattc tgaaagtcga 2640 aaacctgggg ctttcaactg acattctcac cactttgtgt tatttcttcc attgtcagtg 2700 tgccctacac accccgcagg gtgttttcca ctacggcata atgacttctt ccagaaaata 2760 tcgacattta ctacgaagtc gggcccccac cccatttctc gaccactcca cgcattactg 2820 cctcagctcc tcactccaac cccacccagg agccactggt gcgtcaagcg ctacgtttca 2880 agtacaaatt gacgcctttc tcccattcac acaggcccac agccatactt cttctctcca 2940 tcatgccaaa aatctaatct ccaacatgaa aaatggattt gacggcattc tctccacaat 3000 agcccactcc aactcagggc caagcccccg acaacgcatg atcactctag acagccttgt 3060 cgacgtggcc gctccaagaa caatcccagt tattcacata gccggttttg ctggttgcgg 3120 caaaactctt ccagttcagc atttgctcaa aaccaagcac tttcacgact ttcgtgtcag 3180 ctgccccacg aatgaactcc gttctgaatg gaaaagagat atgcaaccga cagccgagaa 3240 cttgtggcgc ttttccacct gggaatcttc tcttctcaaa acttcttcag tgttggtgat 3300 tgatgaaatc tacaagctcc ccaggggtta cctagattta agtatgatcg ccgacccttc 3360 cctacgcctt gtcatcatac ttggtgaccc tctgcaaggc gagtatcact ccacttctcc 3420 acacagctcc aaccacttct taccttcaga aattcaccgc ttcaaatctt acattgattg 3480 ctactgcttt tggtcctacc ggatacccac ttcattcgca cggatgtttg gtgtatccag 3540 tttctccaaa gagcctggtt ttgtcaggac cctcaccacc catcctccca atggcaaaaa 3600 cctcacaaat gccataaata ctgcactcac tctgcaggaa atgggtcatc atgccattac 3660 cattagcagt agtcaaggca cgacatttca agaagctcac accatcctac ttgatcgaca 3720 caccaaccga ctttcaccaa acaattgcct ggttgcattg actcgaagca aagttggtgt 3780 atacttcgtt ggcaatctac atcttgcctc caatgacttt gggaccaatt atctcttctc 3840 ccaatttctt gctggcaaag atgtcgatct ccatcaactc tttccatatg tcatgcctta 3900 tctccccaaa cttcatgagc ccatcaagtc tcgttccatt cggttcgttg caggtctcat 3960 caatccttcc atcaatttct ccatcttgcc aagactctca agacccatcc atctacctcc 4020 ccacattccg gttgactaca agaaagattt tttgatctcc aatcccatag tcgccggcaa 4080 caaaatagac gagcgtcttg acacccatta ccttccaccc actcggctac ccctccattt 4140 tgatctccct ccagggttcc ctcaacctgc cactttttcc gaatctgcac ctcaaccgac 4200 aaatccttta tccctcggac tttttggctt cccctttgaa actctggctg cttttttcct 4260 cccagctcat gatccggaaa tcaaggaaat tatttactcc gatcaaaaga gcaatccttc 4320 cttccagctc acgatccgga aatcaaggaa attatttact ccgatcaaaa gagcaatcaa 4380 tttccttttt ttgaccgtcc ttttgagctt tcctgccaac cctcctcttt gttggctcca 4440 atccattctc ctgctcgtga tccaacactt cttcctgctt ccatataaga aaagattgcg 4500 ttttcgagct agctctaaac cgtattccat tggcccaact gacgtcatat taggccaaca 4560 cttgtactcc tcctggtgtt cagcatactc acgtcccacg tctcaagtgc ttcccttcaa 4620 ccctgagttg ttcgctgaat gcatcaacct caatgagtat gctcaacttt cttccaaaac 4680 acgttctacc ttggttgcta acgctcaacg ctcagatccc gactggcgat acacttctgt 4740 caggattttt gccaaagcac aacacaaggt taacgactca tccatcttct caaactggaa 4800 ggcctgccaa acactggctc taatgcatga ttacattatt ctggttctcg gaccagttaa 4860 aaaatatcaa cgcatttatg accagagaga aagaccaccc caaatctatt accattgtgg 4920 tcatactccc actcagcttt cccagtggtg ctcccaacac ctccggagtc ctgttgccac 4980 cactaacgat tacactgctt ttgatcaatc tcagcatgga gaagcagtcg tctttgagtg 5040 cctcaaaatg aaccgtctct ccattcctcc ccatctcata tctctccact ctcacctcaa 5100 atgctccatc gaaacccaat ttgggcctct tacatgcatg cgtctcaccg gcgagcctgg 5160 gacttatgat gacaactcag attacaatct agctgtcata tactcccagt acgctatcaa 5220 atccgaggcc atcatgattt ctggagacga ttctgtcatt gatggagttc ctccaatcaa 5280 tccaaattgg agcaagatag ggcccctcct tcatctccgc ttcaaaactg aaaaagttcg 5340 tcatcctctc ttttgtggtt actatgtaac ccctgtaggg gcatgccgtg acccaaaagc 5400 tctgttcgcc aaactcatga tctgcataga tgatggaacc ttccaagaca aagttctttc 5460 atacttgtcc gaattttcca tcggccactc tcttggagac gtgcttctgc agcatctaca 5520 cccagatctc ctaatttacc aaactgctgt gcatgactgc ttttgcagac gctgctcccc 5580 ctctcagaaa atgattctgt ccctggatcc catccccgaa tcaaagctat tgctgctgct 5640 gcgcaaagtc aaatgggcca gttctcaatt cttcagtcaa ttgccccaaa aagctcgaga 5700 cttcctcgca gccaagtccc aactttcctc tttccatcaa gatcccaagg tgtcccaact 5760 agagtctgaa ttgcttctct ctctcaattg atccatggaa gaccaaactg cctcacgtgc 5820 caaacaacct tctattcctt ctcctggttt tactctgccc aagccagaca cacagctttc 5880 gtctgcaatc gaacttcctt ttcagttcca ggcaactact ttcggcgcag ccgaaaccgc 5940 cgcccaagtc agtttagctt cttccacacc cataaccaaa ctggcctccc tctatcgtca 6000 tgctcagctt gtcgaatgcc acgcggttat aactcccacc gctttggcta tctccaatcc 6060 actcaccata aacatagtat gggtttctga taactccact gcaaagccca ccgaaatact 6120 gaatgtttac ggtggttctt ctttcacttt cggaggcgct atcaccacca ccaagcccat 6180 catactccct cttccaatga attccattaa ccccatgctc aaggattcag tcctctacac 6240 tgacacccca aagcttctag catattctgc tgctcccagc tctcctacaa aacagccgac 6300 ggcaaccata caaatttatg gaaaacttcg gctatcttct cctttgctgc aggcatctta 6360 ggatgacctg tttcctcact tttccattcc aatcacaaac tcggcctcgt gccactctcc 6420 gcattatcta cggtaattga agccagtgct tcttcctcta gcacacagag gttcacttgg 6480 gtgcgcctcc ccccccttcc gtgggctacg gaaacca 6517 //