ID FN552549; SV 1; linear; genomic RNA; STD; VRL; 2472 BP. XX AC FN552549; XX DT 23-SEP-2009 (Rel. 102, Created) DT 23-SEP-2009 (Rel. 102, Last updated, Version 1) XX DE Plum pox virus partial gene for polyprotein, genomic RNA, isolate IT10PL XX KW . XX OS Plum pox virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2472 RA Palmisano F.; RT ; RL Submitted (18-SEP-2009) to the INSDC. RL Palmisano F., Consiglio Nazionale delle Ricerche, Istituto di Virologia RL Vegetale, Via Amendola, 165/A, 70126, Bari, ITALY. XX RN [2] RA Palmisano F., Boscia D., Minafra A., Savino V.; RT "Serological and molecular property of an unusual recombinant plum pox RT virus isolate recovered in Italy"; RL Unpublished. XX DR MD5; 473da86a7051d1d965850c6d9a4344b8. XX FH Key Location/Qualifiers FH FT source 1..2472 FT /organism="Plum pox virus" FT /host="Prunus domestica" FT /strain="recombinant" FT /isolate="IT10PL" FT /serotype="Marcus" FT /mol_type="genomic RNA" FT /country="Italy:Tuscany" FT /collection_date="20-May-2000" FT /db_xref="taxon:12211" FT CDS <1..>1410 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR039560" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:C8ZLH8" FT /protein_id="CBF06469.1" FT /translation="LSTGMHVLKANTINQLISFASDTLDSSMKTYLVGGLEVDKCDEFK FT NVKLLIRSIYKPQIMEQVLKEEPYLLLMSVLSPGVLMALFNSGSLEKATQYWITRSHSL FT AAITSMLSTLAAKVSLASTLNAQMSVIDEHAAVLCDSVFDGTKPYASYMMAVKTLERMK FT ARTESDHTLNDLGFSVLRQATPHLVEKSYLQELEQTWKELSWSEKFSAILESQRWRIHI FT PKPFIPKDGAYLGGRYDISVRSLLGNQYKRLRNVVRRKRDDVVCYTHQSMGKLFCKAIG FT ISTSFLPSTLKMLDMLIVFGLLLSIGATCNSMINEHKHLKQLAADREDKKRFKRLQVLY FT TRLSEKVGCTPTADEFLEYVGGENPDLLKHAEDLIGDGQVVVHQSKRDSQANLERVVAF FT VALVMMLFDSERSDGVYKILNKLKGIMGSVDQAVHHQSLDDIEDILDEKKLTVDFVLQS FT NEVAPTVPFDS" FT mat_peptide <1..107 FT /product="HCPro protein" FT mat_peptide 108..1154 FT /product="P3 protein" FT mat_peptide 1155..1310 FT /product="6KI protein" FT mat_peptide 1311..>1410 FT /product="CI protein" FT gap 1411..1510 FT /estimated_length=unknown FT CDS <1511..>2472 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C8ZLH9" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C8ZLH9" FT /protein_id="CBF06470.1" FT /translation="GNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHDCICRYFVNG FT DDLVLAVHPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVLYDGMYIPKL FT EPERIVSILEWDRSNEPIHRLEAICASMVEAWGYKGLLREIRKFYSWVLEQAPYNALSK FT DGKAPYIAETALKKLYTDSEASETEIERYLEAFYNDIDDSRDSNIVIHQADEKEDDEEV FT DAGKPTVVTAPAATVATTQPAPVIQPAIQTTTPMFNPIFTPATTQPAIRPVSPISGATP FT QSFGVYGNEDAAPSTSNTLVNTGRDRDVDAGSIGTFAVPR" FT mat_peptide <1511..2146 FT /product="NIb protein" FT mat_peptide 2147..>2472 FT /product="coat protein" XX SQ Sequence 2472 BP; 729 A; 492 C; 553 G; 598 T; 100 other; cactgtcaac tggaatgcat gttttgaaag cgaacacaat caaccaactt attagctttg 60 ctagtgatac attggattca agcatgaaaa catacctggt tggaggtctt gaagtggata 120 agtgtgatga attcaaaaat gtcaagctct tgatcagaag catttacaag ccacaaatca 180 tggagcaggt gcttaaggag gaaccatatt tactgctcat gagcgttttg tcacctggtg 240 tcttaatggc gctgttcaat agtggttcat tggagaaagc cacacaatat tggatcacac 300 gatctcacag cttggcagcg atcacatcaa tgttatcaac acttgcagcc aaagtttcac 360 ttgcaagtac actgaatgca caaatgagcg tcattgacga acatgcagca gtcctatgtg 420 atagtgtttt tgatggaacg aagccatatg catcttacat gatggcagtt aaaactttgg 480 aaaggatgaa agcacggacg gaatccgatc acactttaaa tgacttagga ttctcggtac 540 tcagacaggc aacaccccac ttggttgaaa aaagttatct ccaggagttg gagcaaacct 600 ggaaagagtt aagctggtcg gaaaaattct ctgcaatctt ggaatcacag cggtggcgaa 660 tacatatacc aaaacctttc atcccaaagg acggcgcata tttaggaggc aggtacgata 720 tctccgttcg gtcattactt ggcaaccagt acaaacgcct gcgaaacgta gtccgccgga 780 aaagagacga tgtggtttgc tatacacacc agtcgatggg gaagctattt tgcaaagcca 840 tcggaatttc cacaagtttt cttccaagca ctcttaaaat gcttgacatg ctcatcgtgt 900 tcggtctctt gctttcaata ggagccacat gtaactcaat gatcaatgag cataaacatc 960 tcaagcaact tgccgccgat cgggaagata agaaaaggtt caaaagattg caagtcttat 1020 acacgagatt atcagagaag gttggttgca caccaacagc agatgaattc ctggagtatg 1080 tgggaggtga aaaccctgac ttactgaaac atgcagagga tctaattggg gatggtcaag 1140 ttgttgttca tcaaagcaag agagactcac aagcaaattt ggaacgggtt gtagcatttg 1200 tagctcttgt tatgatgctg tttgactcgg agcgaagtga cggcgtgtac aagattctca 1260 ataaactcaa aggcattatg gggagtgtcg accaggctgt tcatcatcag agcttggacg 1320 atatagaaga tatactggat gagaagaagc tcacagtcga ttttgtgctg caaagtaacg 1380 aagtcgcacc aactgttcct tttgactcaa nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1440 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500 nnnnnnnnnn ggcaacaata gtgggcaacc ttcgacagtt gttgacaata cactcatggt 1560 tattttggca atgacatatt cactcctgaa gcttggatac catccggata cacacgattg 1620 catttgtcgg tacttcgtga atggtgatga tcttgtcctt gcagtgcacc cagcatacga 1680 gagcatttat gatgagcttc aagaacactt ttcccaactt ggattgaatt acacattcgc 1740 cacaaagact gaaaacaagg aagagctgtg gtttatgtca cataaaggtg ttctctacga 1800 tggcatgtac attcccaagc tggagcctga gaggattgta tcaatacttg aatgggacag 1860 atcaaatgag ccaatccatc gattggaggc aatttgtgct tcaatggtgg aagcgtgggg 1920 ttataagggg ctgctgagag agatccggaa attttacagt tgggttcttg aacaagcacc 1980 atataatgct ctttcaaaag atggaaaggc tccgtacata gcagagacgg cactcaagaa 2040 actctatact gattctgaag cgtctgagac ggagattgag agatatcttg aagcatttta 2100 caatgatatt gatgatagcc gtgactccaa cattgttata caccaggctg atgaaaaaga 2160 ggacgatgaa gaagttgatg caggaaaacc cactgtggta actgcaccgg cagcaactgt 2220 ggcaacaact caaccagctc cagtgataca acctgcgatt caaaccacaa caccaatgtt 2280 caaccccatt ttcactccag caacaactca gcctgcgata agaccagttt ctccaatttc 2340 aggggccaca ccacagtctt ttggagttta tggaaatgag gatgcagcac ctagcacctc 2400 aaacactttg gtgaacacag gaagggatag ggacgtcgat gcaggatcga ttggaacttt 2460 cgcagtgcca cg 2472 //