ID FN552006; SV 1; circular; genomic DNA; STD; VRL; 2748 BP. XX AC FN552006; XX DT 07-JAN-2010 (Rel. 103, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Cotton leaf curl Kokhran virus, complete genome, isolate Sak XX KW complete genome. XX OS Cotton leaf curl Kokhran virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2748 RA Amrao L.; RT ; RL Submitted (17-SEP-2009) to the INSDC. RL Amrao L., Agriculture Biotechnology Division, NIBGE, P.O. Box 577, Jhang RL Road, Faisalabad., 38000, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2010.07.003. RX PUBMED; 20621137. RA Amrao L., Akhter S., Tahir M.N., Amin I., Briddon R.W., Mansoor S.; RT "Cotton leaf curl disease in Sindh province of Pakistan is associated with RT recombinant begomovirus components"; RL Virus Res. 153(1):161-165(2010). XX DR MD5; 13052492b6838b761ac58a97cd77602f. XX FH Key Location/Qualifiers FH FT source 1..2748 FT /organism="Cotton leaf curl Kokhran virus" FT /host="Gossypium hirsutum" FT /isolate="Sak" FT /mol_type="genomic DNA" FT /country="Pakistan:Sindh, Sakrand" FT /isolation_source="host leaf" FT /collected_by="Luqman Amrao" FT /collection_date="2005" FT /db_xref="taxon:222464" FT CDS 132..488 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:D2U4X4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2U4X4" FT /protein_id="CBE70780.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFYARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT CDS 292..1062 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D2U4X5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D2U4X5" FT /protein_id="CBE70781.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFSLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1059..1463) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D2U4X6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2U4X6" FT /protein_id="CBE70782.1" FT /translation="MDSRTGELITAAQAENGLFIWEIQNPLYFKITEHHNRPFLMNRDI FT ITVQIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT CDS complement(1204..1608) FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:D2U4X7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2U4X7" FT /protein_id="CBE70783.1" FT /translation="MQSSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHNHGFTHRGTHHCSSSREWPVYLGDSKSPVFQDNRAPQSTIPNEQRHHHRPDTVQSQP FT EESVGDTQMFHSFPNLDDLTASDWSFLKGL" FT CDS complement(1511..2593) FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:D2U4X8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2U4X8" FT /protein_id="CBE70784.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNPSYKEFLDEEKNYALKNWALKNAIFITLESPLY FT SGSNQSAAQASQEGDQTSES" FT CDS complement(2137..2439) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2U4X9" FT /protein_id="CBE70785.1" FT /translation="MGLLTCMFSSSSKANSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSTRTGTLSSGESFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2748 BP; 739 A; 551 C; 631 G; 827 T; 0 other; accggatggc cgcgcgattt ttttgtgggt cctaccatta attcttgtcg gccaaccata 60 tgacgcgctc aaagcttaaa taattttccc gcttattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat 240 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag 300 cgaccagcag atataatcat ttctacgccc gcttcgaagg tacgccgccg tctcaacttc 360 gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt tttccttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt 900 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt 1080 gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact 1140 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga 1200 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa 1260 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctgtatctgg 1320 acggtgatga tgtctctgtt cattaggaat ggtcgattgt ggtgctctgt tatcttgaaa 1380 tacaggggat tttgaatctc ccagataaac aggccattct ctgcttgagc tgcagtgatg 1440 agttcccctg tgcgtgaatc catggttgtg gcaggctaat gctatgaagt acgaacaccc 1500 acaagggaga tcaactctcc gacgtctggt ccccttcttg gctagcctgt gctgcacttt 1560 gattggaacc tgagtagagt gggctctcga gggtgatgaa gattgcattc tttaaagccc 1620 aatttttgag tgcataattc ttctcttcat ccaaaaattc tttatagctt ggattgggtc 1680 ctggattgca gaggaagata gtgggaattc cgcctttaat ttgaactggc ttcccgtatt 1740 ttgtatttga ttgccagtcc ttttgggccc ccatgaactc cttaaagtgc tttaggtaat 1800 gcgggtcgac gtcatcaatg acgttaaacc aggcgtcatt actgtatacc cttgggctca 1860 gatctagatg tccacacaga taattatgtg gacctaatga tctggcccac atcgtcttcc 1920 ccgtcctact gtcaccctca atcactacac ttattggtct attggcccgc gcagcggcac 1980 tgacgacgtt ctcggcagcc cacacttcaa gttcttctgg aacttgatcg aaagaagaag 2040 aggaaaaagg agaaacataa ggagctggtg gctcctgaaa gattctgtct agatttgcat 2100 ttaaattatg aaattgcagt acaaaatcct taggagctag ttccttaatg actctaagag 2160 cctccgactt acttcccgcg ttaagtgctg cggcgtaagc gtcattggct gtctgttgcc 2220 ctcctcttgc tgaccttccg tcgatctgaa actctcccca ctcgagagtg tccccgtcct 2280 tgtcgatgta ggatttgacg tcggagctgg atttagctcc ctgtatgttc ggatggaaat 2340 gtgctgacct gcttggggag accaagtcga agaatcgcat attctggcac ttgaatttgc 2400 cttcgaactg gatgagaaca tgcaagtgag gagtcccatc ttcgtgaagc tctctgcaga 2460 ttctaatata tttttttgaa gttggggttt gtatatttaa taattgggaa agtgcttcct 2520 ctttggtgag agaacatttg ggataagtga tgaaatagtt tttggaataa ataccgttcc 2580 gctttggagg catgttgact aaaattggtc accgattgac cgctcttgca actctccccg 2640 gtatatcggt gatcaatata tagtgatcac caaatggcat aatggtaata aaaaaacttt 2700 aatttgaaat tcaaaccaaa aggctaaagc ggccatccgt ttaatatt 2748 //