Dbfetch
ID FN552004; SV 1; circular; genomic DNA; STD; VRL; 2748 BP. XX AC FN552004; XX DT 07-JAN-2010 (Rel. 103, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Cotton leaf curl Shadadpur virus, complete genome, isolate LS4 XX KW complete genome. XX OS Cotton leaf curl Shahdadpur virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2748 RA Amrao L.; RT ; RL Submitted (17-SEP-2009) to the INSDC. RL Amrao L., Agriculture Biotechnology Division, NIBGE, P.O. Box 577, Jhang RL Road, Faisalabad., 38000, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2010.07.003. RX PUBMED; 20621137. RA Amrao L., Akhter S., Tahir M.N., Amin I., Briddon R.W., Mansoor S.; RT "Cotton leaf curl disease in Sindh province of Pakistan is associated with RT recombinant begomovirus components"; RL Virus Res. 153(1):161-165(2010). XX DR MD5; 1d99e437cc8683453896788348dc6ea8. XX FH Key Location/Qualifiers FH FT source 1..2748 FT /organism="Cotton leaf curl Shahdadpur virus" FT /host="Gossypium hirsutum" FT /isolate="LS4" FT /mol_type="genomic DNA" FT /country="Pakistan:Sindh, Shadadpur" FT /isolation_source="host leaf" FT /collected_by="Luqman Amrao" FT /collection_date="2004" FT /db_xref="taxon:674996" FT CDS 132..488 FT /transl_table=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:D2U4W2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2U4W2" FT /protein_id="CBE70768.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPIRVPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT CDS 292..1062 FT /transl_table=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D2U4W3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D2U4W3" FT /protein_id="CBE70769.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYACRVAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVTCVSEVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASREQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1059..1463) FT /transl_table=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D2U4W4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2U4W4" FT /protein_id="CBE70770.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKNLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFNIY" FT CDS complement(1156..1608) FT /transl_table=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:D2U4W5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2U4W5" FT /protein_id="CBE70771.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNLPNLDDLTASDWSFLKGIQNPSPQKSEQSRCNFN" FT CDS complement(1505..2593) FT /transl_table=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:D2U4W6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2U4W6" FT /protein_id="CBE70772.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNIRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYISHFSSSSFDQVPEELEEWVSENVVDAAARPHRPQSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKIWAVKNAIFITLDRPLY FT SGTNQSTAQGSEEAQQEEESRS" FT CDS complement(2137..2439) FT /transl_table=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2U4W7" FT /protein_id="CBE70773.1" FT /translation="MGLLTCMFSSSSKGNSSARIYDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSQRLLESLRN" XX SQ Sequence 2748 BP; 727 A; 544 C; 639 G; 838 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcttattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat 240 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag 300 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc 360 gacagcccat acgcgtgccg tgttgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaac gtgtgttagt gaagttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt tttttttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca agggaacaag ctctcgtgaa aaaatttatt 900 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctaca 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt 1080 tctgaatatt gatctacata catagtttgt tggattacat tgtacaatac atgttctaca 1140 gctttaataa ctaaattaat tgaaattaca ccgagattgt tcagattttt gaggacttgg 1200 gttttgaata cccttaagaa aagaccagtc tgaggctgta aggtcgtcca gattcggaag 1260 gttagaaaac acttgtgcag tcccagagct ttccgagtgt tgtagttgaa ctggatcctg 1320 atcgtgagta tgtccatatt cgtcgtgaat ggacggttga cgtggctgat gatcttgaaa 1380 taaaggggat ttggaacctc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg 1440 ggttcccctg tgcgtgaatc catggttgtg acagttgatt gacagataat aagaacaccc 1500 gcattcaaga tctactctcc tcctcctgtt gcgcctcttc gcttccctgt gctgtacttt 1560 gattggtacc tgagtacagg ggtctatcaa gtgtgatgaa gatcgcattc tttactgccc 1620 agatctttag tgcggtgttc ttttcctcgt ctaggaattc tttataactg ctgtttggac 1680 caggattgca gaggaagatt gttggtatcc cgcctttaat ttgaactggc ttcccgtact 1740 ttgtgttgga ttgccagtcc ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat 1800 gcgggtcgac gtcatcaatg acattatacc aggcgtcgtt actgtagacc ttgggactca 1860 ggtccagatg tccacacaaa tagttatgtg gtcccaatga cctagcccac atcgtcttcc 1920 ccgtacgact atctccttca atcactatac tttgaggtct gtgtggccgc gcagcggcat 1980 cgacaacgtt ttcggagacc cactcttcaa gttcttctgg aacttgatcg aaagaagaag 2040 aagaaaaatg agaaatatag ggagccggtg gctcctgaaa gattctgtct agatttgcat 2100 ttaaattatg aaattgtagt acaaaatctt taggagctag ttccttaatg actctaagag 2160 cctctgactt acttcccgcg ttaagtgctg cggcgtaagc gtcattggct gtctgttgcc 2220 ctcctcttgc tgaccttccg tcgatctgaa attgccccca gtcgagaatg tccccgtcct 2280 tctcgatgta ggatttgacg tcggagctgg atttagctcc ctgtatgttc ggatggaaat 2340 gtgctgacct gcttggggag accaagtcga agaatcgtat attctggcac ttgaatttcc 2400 cttcgaactg gatgagaaca tgcaagtgag gagtcccatc ttcgtgaagc tctctgcaga 2460 ttctaatata tttttttgaa gttggggttt gtatatttaa taattgggaa agtgcttcct 2520 ctttggtgag agaacatttg ggataagtga tgaaatagtt tttggaataa ataccgttcc 2580 gctttggagg catgttgact aaaattgatc accgattgac cgctcttgca actctccccg 2640 gtatatcggt gatcaatata tagtgatcac caaatggcat aatggtaata aaaaaacttt 2700 aatttgaaat tcaaaccaaa aggctaaagc ggccatccgt ttaatatt 2748 //