ID FN543471; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC FN543471; XX DT 20-NOV-2009 (Rel. 102, Created) DT 20-NOV-2009 (Rel. 102, Last updated, Version 1) XX DE Beet black scorch virus, complete genome, isolate Ir-Sh1 XX KW complete genome. XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3644 RA Mehrvar M.; RT ; RL Submitted (19-AUG-2009) to the INSDC. RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM. XX RN [2] RA Mehrvar M., Bragard C.; RT "Iranian Beet black scorch virus is more diverse than anywhere else"; RL Unpublished. XX DR MD5; 04495baf1691d7ecb658bb54fd20cbd5. XX FH Key Location/Qualifiers FH FT source 1..3644 FT /organism="Beet black scorch virus" FT /isolate="Ir-Sh1" FT /mol_type="genomic RNA" FT /country="Iran:Khorasan Shomali, Shirvan" FT /isolation_source="Beta vulgaris" FT /collected_by="Mohsen Mehrvar" FT /db_xref="taxon:196375" FT CDS join(36..644,648..2210) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase, p82" FT /note="ORF2" FT /note="produced by translational readthrough of ORF1" FT /db_xref="GOA:D1GV54" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D1GV54" FT /protein_id="CBA35009.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP FT KPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGVQ FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD FT RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL FT GVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQTR FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF FT MQFPLSAAPKTKSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA FT LENGFSRLSFDKLDQDIQEEVSLLQFSGA" FT CDS 36..647 FT /product="RNA polymerase, p23" FT /note="ORF1" FT /db_xref="GOA:D1GV55" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D1GV55" FT /protein_id="CBA35010.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK" FT CDS 2228..2419 FT /product="7K protein A, p7a" FT /note="ORF3" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q8B5R7" FT /protein_id="CBA35011.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421..2618 FT /product="7K protein B, p7b" FT /note="ORF4" FT /db_xref="GOA:D1GV57" FT /db_xref="UniProtKB/TrEMBL:D1GV57" FT /protein_id="CBA35012.1" FT /translation="MGTVYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2434..2577 FT /product="5K protein A, p5a" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:D1GV43" FT /protein_id="CBA35013.1" FT /translation="MLFAKNPQGSSCGHSLLQLCVSLDSYRTPHLKDLTTLITKIIRRR FT NT" FT CDS 2647..3345 FT /product="coat protein, p25" FT /note="ORF6" FT /db_xref="GOA:D1GV59" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D1GV59" FT /protein_id="CBA35014.1" FT /translation="MAPKRNKGGRKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTIGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 3410..3547 FT /product="5K hypothetical protein B, p5b" FT /note="ORF7" FT /db_xref="UniProtKB/TrEMBL:D1GV60" FT /protein_id="CBA35015.1" FT /translation="MEDCLHDAGMFSHTVRYRCWILVNRLDRFGWFQTDVSLEIFIVLS FT " XX SQ Sequence 3644 BP; 914 A; 853 C; 935 G; 942 T; 0 other; aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg tatgtgatcc 60 tgcgcatact tgattttatc tttcactcca tcttctttcc atcccttctc tttatcatca 120 aacacaacac caccatccta tgggcttgtc tatgtgccta tgggttctac cgtgctttcc 180 gccttgtttt caagatcaag gttgaggtac atccagccac ccgtgctgtc tttaaggaca 240 tggtcacccg tttccagcgg gagagtatgt tctcgcctga cgatgaagtg cctgagggca 300 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat attaagaggg 360 tccgagctag caggcgagtc tcatacgctg tgagggttgc tcatgtagcc aagtcaaagg 420 tgggactact tgcaaatacc aaggcaaatg agctggtgta ttctcggctt tgtcgagatg 480 agatggtcac ccacggtgtg cgcccatcac acattgcgca tgcagtgccg ctcgctgtcg 540 cggcctgttt tatcccattg gacagtgatt tcttggcagc atcaattaga aactgccagg 600 agatggaaga gcggagggcc gttttggggc cctcatatgg aaaataggga ggcctactct 660 gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc agagggtttg ctggtgaaga 720 gaggaccacc tctggccaaa cctagaaaac tgtaccgttt ttctggattt gggactcata 780 tacggtacgg agtgcacgat cactccttgg gcaatgttcg gaggggactt gtcgagcggc 840 tattcatggt agagaccaaa gatggccttg ctccgacacc aaagcccacc cctggcgtgt 900 atgccaagtt atcccggttc catgaccttg ttagtgccaa tctaacctcg accaccagat 960 taacatacga gcaatttctc gggttttatt ctggtcgcaa attggagagg taccaacagg 1020 ctgtggagtc gttagcaatc cgccctatag gggtccagga tgcttggctt agcacgttcg 1080 ttaaggctga aaaactcaac atttcagcta aacccgaccc ggcacctagg gtcattcagc 1140 ctaggtcgcc gcggtacaat gtggaggttg gacggttcct cagacatgct gaggaacatc 1200 tgttcgatgc cattaaccgt gtgtatggtg gacggacagt attcaagggg ttgaatgctg 1260 atcaggctgg catggagatg caagccatgt ggcaagagtt tgacaatcct gtcggcattg 1320 gcatggacgc ctctcggttt gatcaacacg tttccaagga ggcgttggag ttcgaacaca 1380 agatatggtt gtccatgtac catggctctg acaggaaaac attggcaaag ctgttgggga 1440 tgcaaatcca caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg 1500 aagggtgtcg tatgtctgga gatatcaaca cctcttccgg caactgttat ataatgtgtg 1560 caactgtgca caattattgc agccggttgg gtgttaagag gttcaggctt gccaataatg 1620 gtgatgattg catgctagtc gtggaagcta aggatgaagc gcgtgtaagg caagggctta 1680 ttgaatacta tagggagttg ggattcacaa tgaaagtgga acccactgtc tacgaacttg 1740 agcatcttga gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc 1800 gcaatctaca ccagggcatg tcgaaggacc tacactcctt gcatgatctt ggaagtagga 1860 aagctgccga ggcatgggtc tcagcagttg gcagtggggg acgagtgatg aatgacgggg 1920 tgcctgtact taagtcgttc ttcatgcagt ttcccctatc tgctgctccc aaaaccaagt 1980 ctgatatgag tatagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2040 tcagaaattt agcacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgt 2100 tgccagatga acagattgcc ctggaaaacg gattttctcg tctaagtttt gacaaactag 2160 accaggatat ccaggaggag gttagccttc tccagttctc tggggcatga aaacctaacc 2220 aattttcatg gaacaacagc gtagtgaaca gcgtcgtgaa cgtagggtga gaagcagatc 2280 ggaggacagg aagtctatgt ctgatgtggg acagtctgca gttaataggg aagcagacgt 2340 caagaaagac atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac 2400 acaacatttc cacttctgaa atgggcacag tctatgttgt tcgcgaagaa ccctcagggt 2460 tcctcgtgtg ggcattcgtt gttgcaattg tgtgtatcat tggactccta tcgtacaccc 2520 cacctgaaag acttaaccac tcttatcacg aaaataatca gaagacgcaa tacataacta 2580 ttggaggagc atccactagt aaggtttcca cgaactgaat ttactgcttt ctagtataga 2640 taataaatgg cacctaaacg caacaaagga ggtaggaaga cccgcatgtc cgatgagacg 2700 gtgcgagctc ctgccgctgg aggtgtgata caacgcacac ccggtatccc tccacgtatt 2760 aggtccacca ctattggtac gcgagtatcc aacacagaat tgcttgctgg tgtcaatgtt 2820 gcagcagcag gtgcattttc tgtcgttgga gccggtcttt tccccagtaa ccttggttgg 2880 ctcaatggga ttgcttccaa ctacagcaag tttagatggc tttctataaa gctcatctat 2940 attcccattg tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg 3000 gctgatgcta cacctaccag cttccaacaa gtgcaacaaa tgtataacag cataactgca 3060 cctgtgtggg ctggatttga tggagctact gttcagctat taggggatcg cccaacaatt 3120 ggtgccgtgt gtatcgatgt tgatgtcaat cgatttggat tcacatggta caggtacgca 3180 accttagccg ctattacagc actcactgca aacgacagga atctatacat tcctagcgtt 3240 tgcaatgtgg ctacttctgg cggatctgct gcgactaatg ttggcaactt aatgataaag 3300 tacagcattg agctcattga gcccataccc gctgccatca attagatccc acatcctggt 3360 gtggttaatc cagtgaaaaa tattaggaaa tccatggaat tcacacccca tggaggattg 3420 cttgcatgat gcaggtatgt ttagtcacac tgtgaggtat cgatgctgga tcctggtaaa 3480 caggcttgac aggtttgggt ggttccaaac cgatgtatca ctcgagatat tcatagtact 3540 aagctagaaa acatcatgcg tgcgcacacg gccggctacg tcctatcgtg gccgggggct 3600 ccggagtgcg aaaccctctt atatacctgg ttttccaggt gccc 3644 //