ID FN543470; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC FN543470; XX DT 20-NOV-2009 (Rel. 102, Created) DT 20-NOV-2009 (Rel. 102, Last updated, Version 1) XX DE Beet black scorch virus, complete genome, isolate Ir-Ha1 XX KW complete genome. XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3644 RA Mehrvar M.; RT ; RL Submitted (19-AUG-2009) to the INSDC. RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM. XX RN [2] RA Mehrvar M., Bragard C.; RT "Iranian Beet black scorch virus is more diverse than anywhere else"; RL Unpublished. XX DR MD5; bb6d183060c7fef3c176bc1c130e2983. XX FH Key Location/Qualifiers FH FT source 1..3644 FT /organism="Beet black scorch virus" FT /isolate="Ir-Ha1" FT /mol_type="genomic RNA" FT /country="Iran:Hamadan, Malayer-Dehno Avard Zaman" FT /isolation_source="Beta vulgaris" FT /collected_by="Mohsen Mehrvar" FT /db_xref="taxon:196375" FT CDS join(36..644,648..2210) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase, p82" FT /note="ORF2" FT /note="produced by translational readthrough of ORF1" FT /db_xref="GOA:D1GV47" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D1GV47" FT /protein_id="CBA35002.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDNEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP FT KPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGVQ FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGGR FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGSD FT RKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSRL FT GVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGSTMKVEPTVYELEHLEFCQTR FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSFF FT MQFPLSAAPKTKSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQIA FT LENGFSRLSFDKLDQDTQEEVSLLQFSGA" FT CDS 36..647 FT /product="RNA polymerase, p23" FT /note="ORF1" FT /db_xref="GOA:D1GV48" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D1GV48" FT /protein_id="CBA35003.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDNEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK" FT CDS 2228..2419 FT /product="7K protein A, p7a" FT /note="ORF3" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q8B5R7" FT /protein_id="CBA35004.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421..2618 FT /product="7K protein B, p7b" FT /note="ORF4" FT /db_xref="GOA:B3U3L9" FT /db_xref="UniProtKB/TrEMBL:B3U3L9" FT /protein_id="CBA35005.1" FT /translation="MGTIYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2434..2577 FT /product="5K protein A, p5a" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:D1GV51" FT /protein_id="CBA35006.1" FT /translation="MLFAKNPQGSSCGHSLLQLCVLLDSYRTPHLKDLTTLITKIIRRR FT NT" FT CDS 2647..3345 FT /product="coat protein, p25" FT /note="ORF6" FT /db_xref="GOA:D1GV52" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D1GV52" FT /protein_id="CBA35007.1" FT /translation="MAPKRNKGGRKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 3410..3547 FT /product="5K hypothetical protein B, p5b" FT /note="ORF7" FT /db_xref="UniProtKB/TrEMBL:D1GV53" FT /protein_id="CBA35008.1" FT /translation="MEDCLHDAGMFSHTVRYRCWILVNRLDRFGWFQTDVSLEIFMVLS FT " XX SQ Sequence 3644 BP; 913 A; 852 C; 933 G; 946 T; 0 other; aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg tatgtgatcc 60 tgcgcatact tgattttatc tttcactcca tcttctttcc atcccttctc tttatcatca 120 aacacaatac caccatcctg tgggcttgtc tatgtgccta tgggttctac cgcgctttcc 180 gccttgtttt caagatcaag gttgaggtgc acccagccac ccgtgctgtc tttaaggaca 240 tggtcacccg tttccagcgg gagagtatgt tctcacccga caatgaagtg cctgagggca 300 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat attaagaggg 360 tccgagctag caggcgagtc tcatacgctg tgagggttgc tcatgtagcc aagtcaaagg 420 tgggactact tgcgaacacc aaggcaaatg agctggtgta ttctcggctt tgtcgagatg 480 agatggttac ccacggtgtg cgcccatcac acattgcaca tgcagtgccg cttgctgtcg 540 cggcctgttt tatcccattg gacagtgatt tcttggcagc atcaattaga aactgccagg 600 agatggaaga gcggagggcc gttttggggc cctcatatgg aaaataggga ggcctactct 660 gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc agagggtttg ctggtgaaga 720 gaggaccacc tctggccaaa cccagaaaac tgtaccgttt ttctggattt gggactcata 780 tacggtacgg agtgcacgat cactccttgg gcaatgttcg gaggggactt gtcgagcggc 840 tatttatggt agagaccaaa gatggccttg ctccgacacc aaagcccacc cctggcgtgt 900 atgccaagtt atcccggttt catgaccttg ttagtgccaa tctaacctcg accaccagat 960 taacatacga gcaatttctc gggttttatt ctggtcgcaa attggagagg taccaacagg 1020 ctgtggagtc gttagcaatc cgcccaatag gggtccagga tgcttggctt agcacgttcg 1080 ttaaggctga aaaactcaac atctcagcca aacccgaccc ggcacctagg gtcattcagc 1140 ctaggtcgcc gcggtataat gtggaggttg gacggttcct cagacatgct gaggaacatc 1200 tgttcgatgc cattaaccgt gtgtatggtg gacggacagt attcaagggg ttgaatgctg 1260 atcaggctgg catggagatg caagccatgt ggcaagaatt tgacaatcct gtcggtattg 1320 gcatggatgc ctctcggttt gatcaacacg tttctaagga ggcgttggag ttcgaacaca 1380 agatatggtt gtccatgtac catggctctg acaggaaaac attggcaaag ctgttgggga 1440 tgcaaatcca caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg 1500 aagggtgtcg tatgtctgga gatattaaca cctcttccgg caactgttat ataatgtgcg 1560 caactgtgca caattattgc agccggttgg gtgttaagag gttcaggctt gccaacaatg 1620 gtgatgattg catgctagtc gtggaagcta aggatgaagc gcgtgtaagg caagggctta 1680 ttgaatacta tagggagttg ggatccacaa tgaaagtgga acccactgtc tacgaacttg 1740 agcatcttga gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc 1800 gcaatctaca ccagggcatg tcgaaggatc tacactcctt gcatgatctt ggaagtagga 1860 aagctgccga ggcatgggtc tcagcagttg gtagtggggg acgagtgatg aatgacgggg 1920 tgcctgtact caagtcgttc ttcatgcagt tccccctttc tgctgctcct aaaaccaagt 1980 ctgatatgag tatagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2040 tcagaaattt agcacccact ccacaatccc gctactcatt ttggcgtgct tttggagtgt 2100 tgccagatga acagattgcc ctggaaaatg gattttctcg tctaagtttt gacaaactag 2160 atcaggatac ccaggaggag gtcagccttc tccagttttc tggggcatga aaacctaacc 2220 acttttcatg gaacaacagc gtagtgaaca gcgtcgtgaa cgtagggtga gaagcagatc 2280 ggaggacagg aagtctatgt ctgatgtggg acagtctgca gttaataggg aagcagacgt 2340 caagaaagac atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac 2400 acaacatttc cacttctgaa atgggcacaa tctatgttgt tcgcgaagaa ccctcagggt 2460 tcctcgtgtg ggcattcgtt gttgcaattg tgtgtattat tggactccta tcgtacaccc 2520 cacctgaaag acttaaccac tcttatcacg aaaataatca gaagacgcaa tacataacta 2580 ttggaggagc atccactagt aaggtttcca cgaactgaat ttactgcttt ctagtataga 2640 taataaatgg cacctaaacg caacaaagga ggtaggaaga cccgcatgtc cgatgagacg 2700 gtgcgagctc ctgctgctgg tggtgtaata caacgcacac ccggcattcc cccacgtatt 2760 aggtccacca ctattggtac gcgagtatcc aacacagaat tacttgctgg tgtcaatgtt 2820 gcagcagcag gtgcattttc tgtcgttgga gccggtcttt tccccagcaa ccttggctgg 2880 ctcaacggga ttgcttccaa ttatagcaag tttagatggc tttctataaa gctcatctat 2940 attcccattg tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg 3000 gctgatgcta cacctaccag cttccagcaa gtgcaacaga tgtataacag cataactgca 3060 cctgtatggg ctggatttga tggagctact gttcagctat taggggatcg cccaacaact 3120 ggtgccgtgt gtatcgatgt tgatgtcaat cgatttggat ttacatggta caggtacgca 3180 accttagccg ctatcacagc actcactgca aacgacagga atctgtacat tcctagcgtt 3240 tgtaatgtgg ctacttctgg cggatctgct gcgactaatg ttggcaactt aatgataaag 3300 tacagcattg agcttattga gcctataccc gctgccatca attagacccc acatcctggt 3360 gtggttaatc cagtgaaaaa tattaggaaa tccatggaat tcacacccca tggaggattg 3420 cttgcatgat gcaggtatgt ttagtcacac tgtgaggtat cgatgctgga tcctggtaaa 3480 caggcttgac aggtttgggt ggttccaaac cgatgtatca ctcgagatat tcatggtact 3540 aagctagaaa acatcatgcg tgcgcacacg gccggctacg tcctatcgta gccgggggct 3600 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc 3644 //