ID FN543467; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC FN543467; XX DT 20-NOV-2009 (Rel. 102, Created) DT 20-NOV-2009 (Rel. 102, Last updated, Version 1) XX DE Beet black scorch virus, complete genome, isolate Ir-Ksh3 XX KW complete genome. XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3644 RA Mehrvar M.; RT ; RL Submitted (19-AUG-2009) to the INSDC. RL Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix RL du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM. XX RN [2] RA Mehrvar M., Bragard C.; RT "Iranian Beet black scorch virus is more diverse than anywhere else"; RL Unpublished. XX DR MD5; 78cc09bd38a77b179aa3a40ec475e3df. XX FH Key Location/Qualifiers FH FT source 1..3644 FT /organism="Beet black scorch virus" FT /isolate="Ir-Ksh3" FT /mol_type="genomic RNA" FT /country="Iran:Kermanshah, Islam Abad Gharb" FT /isolation_source="Beta vulgaris" FT /collected_by="Mohsen Mehrvar" FT /db_xref="taxon:196375" FT CDS join(36..644,648..2210) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase, p82" FT /note="ORF2" FT /note="produced by translational readthrough of ORF1" FT /db_xref="GOA:D1GV25" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D1GV25" FT /protein_id="CBA34980.1" FT /translation="MDSIPYVILRILNFVLYSIIFPSLLFFINHHTTILWACLCAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAARVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCNEMEERRAVLGPSYGKGGLLCTSGFTTPTWRGNPE FT GLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPTP FT KPTPGVYAKLSRFHDLVSSNLTSTTRLTYEQFLGFYSGRKLERYQQAAESLAIRPIGVQ FT DAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEIGRFLRHAEEHLFDAINRVYGGR FT TVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHRIWLSMYHGAD FT RKVLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSRL FT GVKRFRLANNGDDCMLVVESKDEARVRQGLIEYYRELGFTMKVEPTVYELEHIEFCQTR FT PVLVDGAYRMVRNLHQGMSKDLHSLHDLGSKKAAEAWVSAAGSGGRVMNDGVPVLKSFF FT KQFPLLSGPKTKSDMSIALQEDWKYKFNRTGCFKDLTPTPQSRYSFWRAFGVLPDEQIA FT LEKGFSRLSFDKLDQDIQEEVSLLQFSGA" FT CDS 36..647 FT /product="RNA polymerase, p23" FT /note="ORF1" FT /db_xref="GOA:D1GV19" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D1GV19" FT /protein_id="CBA34981.1" FT /translation="MDSIPYVILRILNFVLYSIIFPSLLFFINHHTTILWACLCAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAARVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCNEMEERRAVLGPSYGK" FT CDS 2228..2419 FT /product="7K protein A, p7a" FT /note="ORF3" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q8B5R7" FT /protein_id="CBA34982.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421..2618 FT /product="7K protein B, p7b" FT /note="ORF4" FT /db_xref="GOA:D1GV28" FT /db_xref="UniProtKB/TrEMBL:D1GV28" FT /protein_id="CBA34983.1" FT /translation="MSTIYVVHEKPSGFLVWAFVVAIVCIIGHLSYTQPERLNHSYHEN FT NQKTQYITIGGASTSKVSMN" FT CDS 2434..2577 FT /product="5K protein A, p5a" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:D1GV29" FT /protein_id="CBA34984.1" FT /translation="MLCMRSLRGFSCGHLLLQLCVSLDTYRTPNLKDLTTLITKTIRRR FT NT" FT CDS 2647..3345 FT /product="coat protein, p25" FT /note="ORF6" FT /db_xref="GOA:D1GV30" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D1GV30" FT /protein_id="CBA34985.1" FT /translation="MAPKRNKGSRKARMSDETVRAPAAGGVIQRTPGIPPRIRSTTFGT FT RVTNTELLAGINVSAGGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYVPIVPT FT TTAGAMTMALSYDPADATPASFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTRAVCI FT DVDVDRFGFTWYRYATLAAINALTANDRNLYIPSVCNVATSGGTLATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 2693..2977 FT /product="10K hypothetical protein, p10" FT /note="ORF7" FT /db_xref="UniProtKB/TrEMBL:D1GV24" FT /protein_id="CBA34986.1" FT /translation="MRLYGLQLLEALYNAHPAFLHVLGPPPLVRVLPTLSCLLASMCQL FT VVLSQLLGLDCFPATLVGSMGLLQIIVSLGGSPSSLSMFPLSPQPRLGP" XX SQ Sequence 3644 BP; 897 A; 841 C; 950 G; 956 T; 0 other; aagaaaccta accagtttct cgttgatcag tgatcatgga ttcaatcccg tatgtgatcc 60 tgcgcatact gaattttgtc ctttactcca tcatctttcc ttcacttctc ttcttcatca 120 accaccacac taccatccta tgggcatgtt tgtgtgccta cggattctac cgcgcgtttc 180 gcctcatctt caagattaag gtcgaagtgc accctgccac tcgtgctgtc tttaatgata 240 tggtcactcg ctttcagcgg gagagcatgt tttcacctga cgacgaagtg cctgagggca 300 tccccatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat attaagaggg 360 tccgtgctag caggcgagtc tcatatgctg cgagggtagc ccatgtagcc aagtcgaagg 420 tgggattact cgccaacact aaggcaaatg agctggtgta ctctcgattg tgtcgggatg 480 agatggtgac gcacggtgtt cgtccatcgc acatcgcaca tgcagtgccg ctggctgtcg 540 cggcctgttt tataccattg gacagtgact ttcttgcagc ttcaattaga aactgcaatg 600 agatggaaga gcggagggcc gttttagggc cctcatatgg aaaataggga ggcctactct 660 gcaccagcgg gtttaccaca ccgacttggc gtggtaatcc agagggtttg ctggtgaaga 720 gaggacctcc tctggccaaa cctagaaaat tataccgttt ttccgggttt gggactcata 780 tacggtatgg agtgcatgac cactccctgg gcaatgttcg gaggggactt gttgagcgtc 840 tgttcatggt ggaaaccaag gacgggcttg ctccaacacc taagcccacc cctggcgtgt 900 atgccaagtt atcccggttt catgacctag tcagttccaa tctaacctcg accaccagat 960 tgacatacga gcagtttctc ggattttatt ctggtcgcaa attagaaagg taccagcagg 1020 ccgcggagtc gttagcaatc cgcccaatag gggtacagga tgcttggctt agcacgttcg 1080 tgaaggctga aaaattaaac atctcagcta aacccgaccc ggcacctagg gttattcagc 1140 ctaggtcgcc gaggtacaat gtggagatcg gacggttcct cagacatgct gaggaacatc 1200 tgttcgatgc tatcaatcgt gtgtatggtg ggcgcacagt gttcaaaggg ttgaacgctg 1260 atcaggctgg catggagatg caagccatgt ggcaagaatt tgacaatccc gttggtattg 1320 gcatggatgc ctcccggttc gaccaacacg tctcgaaaga ggcgttggag tttgaacaca 1380 ggatatggct atccatgtac catggagctg ataggaaggt gctgtcaaag cttttgggaa 1440 tgcaaattca caatcgcggt cttgccagat gccctgatgg ggagatcagg tacacggttg 1500 aagggtgtcg tatgtctggg gatattaaca cttcctctgg taactgttat ataatgtgtg 1560 catccgtaca caattattgc agtcggttgg gtgttaagcg gtttaggctt gccaataatg 1620 gtgacgattg catgcttgtg gtcgaatcca aggacgaagc acgtgtaagg cagggactca 1680 tcgagtatta cagggagcta gggttcacca tgaaggtaga acccactgtc tatgaactcg 1740 agcatattga gttttgccaa acacgcccag tccttgttga tggtgcttac agaatggtac 1800 gcaatcttca ccagggtatg tccaaggacc tacactcctt gcatgatctt ggtagcaaga 1860 aggctgctga ggcttgggtt tcagcagcgg ggagcggggg tcgcgtgatg aacgatggag 1920 taccagtgct caaatcgttt ttcaagcaat tccccttgct ctctggacct aaaaccaagt 1980 ccgatatgag tatagcgttg caggaagatt ggaaatacaa gttcaatcgg actgggtgtt 2040 tcaaggattt aacacccact ccacaatccc gctactcatt ttggcgtgcg tttggagtgt 2100 taccagatga acagatagcc ctggagaagg gattttctcg tcttagcttt gataagttgg 2160 accaggatat ccaggaggag gttagcctcc tccaattctc tggggcatga aaacctaacc 2220 acttttcatg gaacaacagc gtagtgaaca acgtcgtgaa cgtagagtga gaagtagatc 2280 ggaggacagg aagtcgatgt ctgatgtagg acagtctgct gtgaataggg aagcggatgt 2340 caagaaggat atgggtccat cggtctctat gacggtggtg ggggaaaacg tggagttcac 2400 acaacatttc cacttctgaa atgagcacca tttatgttgt gcatgagaag ccttcggggt 2460 ttctcgtgtg ggcatttgtt gttgcaattg tgtgtatcat tggacactta tcgtacaccc 2520 aacctgaaag acttaaccac tcttatcacg aaaacaatca gaagacgcaa tacataacta 2580 ttggaggagc atccactagt aaagtttcca tgaactgaat ttactgcttt ctagtatagt 2640 taataaatgg cacctaagcg taataaaggg agtaggaaag ctcgtatgtc cgatgagact 2700 gtacgggctc cagctgctgg aggcgttata caacgcacac ccggcattcc tccacgtatt 2760 aggtccacca cctttggtac gcgtgttacc aacactgagt tgcttgctgg catcaatgtg 2820 tcagctggtg gtgctttctc agttgttggg gctggactgt ttcccagcaa ccttggttgg 2880 ctcaatggga ttgcttcaaa ttatagtaag tttaggtggc tctccatcaa gcttatctat 2940 gttcccattg tccccacaac cacggctggg gccatgacta tggctttatc atacgatccc 3000 gctgatgcta cacccgccag cttccagcag gtgcaacaga tgtataacag catcactgca 3060 cctgtttggg ctggtttcga tggagctact gttcagctgt taggggatcg gccaacgacc 3120 agagctgtgt gtatcgatgt tgatgtcgac cggttcggtt tcacatggta taggtatgca 3180 acactcgctg ctattaacgc actcactgct aatgatagga atctatatat ccctagcgtt 3240 tgcaatgtgg ctacgagcgg cggaactctt gctaccaatg ttggcaattt aatgataaaa 3300 tacagtatag agcttatcga gcctataccc gctgccatta attagatccc acatcctggt 3360 gtggttaatc cagtgaagaa tattaggaaa tccttgggac tcacacccca aggaggattg 3420 cttgcatggt gcaggtatgt tgagttacac tgtgaggtat cgatgctgga tcctgggaaa 3480 caggcttgac aggtttgggt ggttccaaac cgctgcatca ctcgagatac tcacggtatt 3540 caacaaggaa acaccatgcg tgcgcacacg gctggctatg tcctatcata gccgggggct 3600 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc 3644 //