ID FN543112; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC FN543112; XX DT 26-AUG-2010 (Rel. 105, Created) DT 31-MAY-2011 (Rel. 109, Last updated, Version 2) XX DE Croton yellow vein virus, complete genome, clone 1 XX KW complete genome. XX OS Croton yellow vein virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2744 RA Hussain K.; RT ; RL Submitted (18-AUG-2009) to the INSDC. RL Hussain K., ABD, NIBGE, Jhang Road, Faisalabad, 38000, PAKISTAN. XX RN [2] RX DOI; 10.1007/s00705-011-0993-0. RX PUBMED; 21487662. RA Hussain K., Hussain M., Mansoor S., Briddon R.W.; RT "Complete nucleotide sequence of a begomovirus and associated betasatellite RT infecting croton (Croton bonplandianus) in Pakistan"; RL Arch. Virol. 156(6):1101-1105(2011). XX DR MD5; 59d04f20377604b2251c01109ed89738. DR EuropePMC; PMC3550815; 23730010. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Croton yellow vein virus" FT /host="Croton glandulosus" FT /mol_type="genomic DNA" FT /country="Pakistan:Punjab" FT /collected_by="Khadim Hussain" FT /collection_date="2006" FT /clone="1" FT /tissue_type="host leaf" FT /db_xref="taxon:671095" FT CDS 147..503 FT /gene="v2" FT /product="precoat protein" FT /db_xref="GOA:E0WD86" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E0WD86" FT /protein_id="CBA32735.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP FT EAQDVQDVQKPRCP" FT CDS 307..1077 FT /gene="v1" FT /product="coat protein" FT /db_xref="GOA:E0WD87" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E0WD87" FT /protein_id="CBA32737.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDTQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1074..1478) FT /gene="c3" FT /product="replication enhancer" FT /db_xref="GOA:E0WD88" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E0WD88" FT /protein_id="CBA32739.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMKEDI FT MTIRIQFNHNLRRALGMHKCFLVFRIWMTSQPQTGRFLRVFKTQVLKYLNNLGVISINN FT VIRSVDHVLWNVLQHIVYIEQSYSIKFNIY" FT CDS complement(1219..1623) FT /gene="c2" FT /product="transcriptional activator protein" FT /db_xref="GOA:E0WD89" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0WD89" FT /protein_id="CBA32741.1" FT /translation="MRHSSPSNAHSTQVPIKVQHRIAKKGIRRRPVDLPCGCSYFISIA FT CHDHGFTHRGTHHCSSSREWRIYLGDSKSPVFQDNRTPQQAIPNEGRHNDNPNTVQSQP FT EESIGDAQVFSSLPNLDDFTASDWSFLKGI" FT CDS complement(1526..2611) FT /gene="c1" FT /product="replication initiator protien" FT /db_xref="GOA:E0WD90" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E0WD90" FT /protein_id="CBA32745.1" FT /translation="MPRQNQFQIKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALTIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEAYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLECPL FT YSGSNQSAAQDSQEGDQASTS" FT CDS complement(2197..2454) FT /gene="c4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0WD91" FT /protein_id="CBA32748.1" FT /translation="MGACISTHSSNSKVNPSSETPDISMSLTLITPPNSTQTSREQSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRP" XX SQ Sequence 2744 BP; 757 A; 535 C; 622 G; 830 T; 0 other; accggatggc cgcgaaaaaa aaaatagtgg gccccatggc gcactaactg acaaagacat 60 ctccaccaat gaaaagagct cctcagagct taattgtttt gtggtcccct atttaaactt 120 cgccaccaag tagtgcattg cgcactatgt gggatccatt agtaaacgag tttcccgaaa 180 ccgttcacgg gtttagatgt atgttagcag ttaaatatct gcagttagta gagaagactt 240 atgctcctga cacattgggg cacgatttaa ttagggattt aatttcagta attagggcta 300 ggaattatgt cgaagcgtcc agcagatata atcatttcca cgcccgcttc gaaggtacgc 360 cgtcgtctca acttcgacag cccatatgtg aaccgtgctg ctgcccccat tgtccgcgtc 420 accaaagcaa aggcatgggc gaacagaccc atgtaccgga agcccaggat gtacaggatg 480 tacagaagcc cagatgtccc taagggatgt gaaggcccat gtaaggtcca gtcttttgag 540 tctagacatg acactcagca tataggtaaa gttatgtgta ttagtgatgt tactcgtgga 600 actgggctga cccatcgagt gggtaaaagg ttttgtgtta agtctgttta tgttttgggt 660 aagatctgga tggatgaaaa tattaagacc aaaaatcaca ctaatagtgt gatgttcttt 720 ctagttaggg atcgtaggcc tgtggataaa ccccaagatt ttggagaggt atttaacatg 780 tttgataatg agcccagtac ggctactgtg aagaacgttc atcgtgatag gtatcaagtt 840 cttcggaaat ggcatgcaac tgttacaggt ggacaatatg cgtcaaagga acaagccctc 900 gtgaagaagt ttgttagggt taacaattat gttgtttata accagcaaga ggctggcaaa 960 tatgagaatc attctgagaa tgcgttaatg ttgtatatgg catgtactca tgcatctaac 1020 ccagtgtatg ctactctgaa aatacggatc tatttttatg attccgtaac aaattaataa 1080 atattaaatt ttattgaata agattgttct atatatacaa tgtgttgtaa tacattccat 1140 aatacatgat caactgatct gattacatta ttaatactga taactcctaa attatttaag 1200 tatttaagaa cttgagtctt aaataccctt aagaaacgac cagtctgagg ctgtgaagtc 1260 atccagattc ggaagactag aaaacacttg tgcatcccca atgctctcct caggttgtga 1320 ttgaactgta ttcggattgt cattatgtct tccttcatta ggaatggcct gttgtggtgt 1380 tctgttatct tgaaatacag gggattttga atctcccaga taaatacgcc attctctgct 1440 tgagctgcag tgatgagttc ccctgtgcgt gaatccatgg tcgtggcagg ctatggatat 1500 gaagtatgaa cacccacacg gtagatcaac tggtcgacgc ctgatcccct tcttggctat 1560 cctgtgctgc actttgattg gaacctgagt agagtgggca ttcgagggtg atgaatgtcg 1620 cattctttaa agcccaattt ttgagtgcag cattcttctc ttcatccaag aactctttat 1680 aactggaatt cggtcctgga ttgcagagga agatagtggg aattccgcct ttaatttgaa 1740 ctggctttcc gtactttgta tttgattgcc agtccctttg ggcccccatg aattccttaa 1800 agtgctttag gtaatgggga tctacgtcat caatgacgtt ataccaggca tcattattgt 1860 agacctttgg gctaaggtct agatgtccac acaaataatt atgtggtccg agtgatctgg 1920 cccacatcgt cttgcccgtt ctactatcac cctctatcac tatacttatg ggcctcaaag 1980 gccgcgcagc ggcactgaca acgttctcgg cagcccactc ctcaagttct tgtggaactt 2040 gatcaaaaga agaagaggaa aaaggagaaa cataagcctc cacaggaggt gtaaaaatcc 2100 tatctaaatt acattttaaa ttatgatatt gaaaaataaa atctttgggg agtttttccc 2160 taattattgt taaagcagct tcagccgaac ctgcatttag ggcctctgct gcagcatcat 2220 tagctgtctg ttgacctcct ctagcagatc ttccatcgat ctgaaactga ccccagtcga 2280 tgtaatcact gtccttctcg atgtaggact tgacatcaga gctggacttt gctccctgga 2340 agtttgggtg gaattgggag gagttattag ggtgagtgac atcgaaatgt ctggggtttc 2400 tgaactggga tttacctttg aattggatga gtgcgtggat atgcaggctc ccatcttggt 2460 gtttttcttg tgatactctg ataaataatt tatcagaagg acaagaaatg tttttaagta 2520 gttcgagcat ttgctctttg ggtattgggc atttaggata agtgaggaag atattttttg 2580 ccttaatttg gaattggttt tgacgtggca tattgaattg ggtgctctca aaactctgag 2640 gaatgggggg ctttgggtgc ctatttatac tgagctccca aatggcactt tcgtaattac 2700 gaaagaaatt tcaaaattcc caaagcggcc atccgtataa tatt 2744 //