ID   FN436003; SV 1; circular; genomic DNA; STD; VRL; 2677 BP.
XX
AC   FN436003;
XX
DT   09-JUN-2010 (Rel. 105, Created)
DT   07-MAR-2015 (Rel. 124, Last updated, Version 2)
XX
DE   Sida micrantha mosaic virus segment DNA A, complete sequence, isolate
DE   Brazil:Mato grosso do sul:1:2007
XX
KW   complete genome.
XX
OS   Sida micrantha mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2677
RA   Paprotka T.;
RT   ;
RL   Submitted (12-AUG-2009) to the INSDC.
RL   Paprotka T., Molecular Biology and Virology of Plants, University of
RL   Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, GERMANY.
XX
RN   [2]
RA   Paprotka T., Metzler V., Jeske H.;
RT   "The first DNA 1-like .. satellites in association with New World
RT   begomoviruses in natural infections";
RL   Virology 0:0(2010).
XX
DR   MD5; 48ae036181094a5538922ee912ba3d33.
DR   BioSample; SAMEA3283105.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2677
FT                   /organism="Sida micrantha mosaic virus"
FT                   /segment="DNA A"
FT                   /host="Sida rhombifolia"
FT                   /isolate="Brazil:Mato grosso do sul:1:2007"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil:Mato Grosso do Sul"
FT                   /lat_lon="20.24 S 56.38 W"
FT                   /collection_date="30-Nov-2007"
FT                   /db_xref="taxon:228897"
FT   CDS             242..1024
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:D7FB04"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB04"
FT                   /protein_id="CBA18093.1"
FT                   /translation="MYDVSNYFEMPKRDPSWRQMAGTSKVSRTSNFSPRGGGGPKYNKA
FT                   SEWVHRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNG
FT                   ITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMF
FT                   DNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGK
FT                   YENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(1021..1419)
FT                   /gene="AC3"
FT                   /product="replication enhancer"
FT                   /db_xref="GOA:D7FB05"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB05"
FT                   /protein_id="CBA18094.1"
FT                   /translation="MDSRTGEFITAPQAENGVYIWEITNPLYFKMYHVEDPPYTRTRVY
FT                   HVQIRFNHNLRKALGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVISLNN
FT                   VIRAVRFATDKAYVNYVLEDHDIKFKFY"
FT   CDS             complement(1166..1585)
FT                   /gene="AC2"
FT                   /product="transcriptional regulator"
FT                   /db_xref="GOA:D7FB06"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB06"
FT                   /protein_id="CBA18095.1"
FT                   /translation="MQHSVLGQSTMQNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGC
FT                   SIFTHLNCTGHGFTHRGIHHCTSGREWRLYLGDNKSPLFQDVPRRGSTVHEDQSVPRTD
FT                   KVQPQPQESIGSPQGLPELPSLDDFSDSFWNNLFD"
FT   CDS             complement(1476..2552)
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:D7FB07"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB07"
FT                   /protein_id="CBA18096.1"
FT                   /translation="MPPPKRFKISAKNYFLTYPQCSLTKEETLSQLQSLTTPVNKKFVK
FT                   ICRELHEDGQPHLHVLIQFEGKFQCTNQRFFDLVSPSRSVHFHPNIQGAKSASDVKSYI
FT                   NKDGDTIEWGDFQVDGRSARGGCQTANDAAAEALNAPSKEAALQIVREKLPEKFLFQFH
FT                   NLNSNLDKIFAKAPEPWAPPYQLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVEG
FT                   GSRTGKTMWARALGPHNYLSGHLDFNSKVFSDEVEYNVIDDVAPHYLKLKHWKELIGAQ
FT                   QKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRAWTIHNAKFIFLD
FT                   APLYQTETQDCQEESHQA"
FT   CDS             complement(2138..2395)
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB08"
FT                   /protein_id="CBA18097.1"
FT                   /translation="MGSHISTCLYSSKGNSSARIRDSSIWCPRPGQYISIRTFRELNQR
FT                   PTSSPTSTRTGTQSNGEISRSTEEVLEAVAKQLTTLPQKP"
XX
SQ   Sequence 2677 BP; 659 A; 617 C; 654 G; 747 T; 0 other;
     accggatggc cgcgcgattt ttcccccccc cacgtggcgc tctggtggtc gtgcgatctc        60
     tctccccctc tctcgcgcga cgtggagctc tggtgtccgc gcgtttcccc ccgcgcgcta       120
     tgcctttaat tcaaattaaa ggaaataact ttcatcagga ccaatgaaat tgcgtctttt       180
     aagcctagat atttgcggaa gacttgggcc cgaagttgtt gggcgactat ataattaagt       240
     catgtatgac gtcagtaatt atttcgaaat gcccaagcgg gatccctcat ggcgccagat       300
     ggcgggaacc tcaaaggtta gccgcactag caacttttcc cctcgtggag gtggaggccc       360
     aaagtacaac aaggcctcgg aatgggttca caggcccatg tataggaagc ccaggatata       420
     caggatgata aggactcctg atgttccaag aggctgtgaa ggaccctgca aggttcagtc       480
     ctacgagcag cgtcacgaca tctcacatgt cgggaaggtc atgtgcatat ctgatgtcac       540
     acgtggcaac ggtataaccc accgtgtcgg taagcgtttc tgcgttaagt ctgtgtacat       600
     tttagggaag atatggatgg acgagaacat caagctcaag aaccacacga acagtgtcat       660
     gttctggttg gtcagagacc gtagaccgta tggtactcct atggattttg gccaggtgtt       720
     taacatgttt gacaacgagc ccagcactgc tacggtgaag aacgatctcc gtgatcgtta       780
     tcaagttatg cacaagttct acgctaaggt cactggtgga cagtatgcca gcaacgaaca       840
     ggctctggtc aagaggttct ggaaggtcaa caatcatgtg gtgtacaacc accaggaagc       900
     tggcaagtat gagaatcaca cggagaatgc tttgttactg tatatggcat gtacccatgc       960
     ctctaaccct gtgtatgcaa cgcttaagat tcggatctac ttctacgatt cgataaccaa      1020
     ttaataaaat ttgaatttta tatcatgatc ttcaagtaca tagtttacat aggctttgtc      1080
     agtggcaaag cgaacagctc taattacatt attaagggaa attacaccta attgatctaa      1140
     gtacatcatc acaaggcgtc taagcctaat caaataagtt gttccagaag ctgtcagaga      1200
     agtcgtccag acttggaagt tcaggtaggc cttgtggaga cccaatgctt tcctgaggtt      1260
     gtggttgaac cttatctgta cgtggtacac tctggtcctc gtgtacggtg gatcctctac      1320
     gtggtacatc ttgaaataga ggggatttgt tatctcccag atataaacgc cattctctgc      1380
     ctgaggtgca gtgatgaatt ccccggtgcg tgaatccatg cccggtgcag ttgaggtgtg      1440
     tgaatatgga gcagccgcac tctaggtcca ctcgtctacg cctgatggct ctcttcttgg      1500
     caatcctgtg tctcggtttg atagaggggg gcgtcgagga agatgaattt tgcattgtgg      1560
     attgtccaag cacggagtgc tgcattttcc tctttgtcga ggaagtcttt atagctagcc      1620
     ccctctccag gattgcacag cacgattgaa gggaccccac cttcaattaa acgaggcttt      1680
     ccgtacttgc aatttgtctg ccatttttgt tgggccccta ttagctcttt ccagtgtttc      1740
     aactttaagt aatgcggagc gacgtcatca atgacgttat actccacttc gtctgagaac      1800
     acctttgagt tgaaatctag atggccactc aagtaattat gtgggcctaa tgctctagcc      1860
     cacatcgtct tacctgttcg actacctcct tcaacaatta aacttatagg cctcaatggc      1920
     cgcgcagcgg aacccctccc aaaataatca tcggcccact cttgcatctc gtctggcacg      1980
     ttagtgaatg aggagagttg atacggaggg gcccatggct ccggagcctt tgcaaagatt      2040
     ttatctaaat tactatttag attgtgaaac tgaaataaga acttttccgg taacttttcc      2100
     ctaacgatct gcaaggcggc ttctttagaa ggggcgttca aggcttctgc ggcagcgtcg      2160
     ttagctgttt ggcaaccgcc tctagcactt cttccgtcga cctggaaatc tccccattcg      2220
     attgtgtccc cgtccttgtt gatgtaggac ttgacgtcgg acgctgattt agctccctga      2280
     atgttcggat ggaaatgtac tgaccgggac ggggacacca gatcgaagaa tctctgattc      2340
     gtgcactgga atttcccttc gaactgtata agcacgtgga gatgtggctg cccatcttcg      2400
     tgaagttctc tgcaaatctt tacgaacttc ttgttaactg gtgttgttaa gctctgtaat      2460
     tgggaaagtg tctcctcttt ggttaaggag cactggggat atgtcaagaa ataattcttg      2520
     gcacttattt taaaacgctt tggcggtggc atttttgtaa ataaaggggt gtaccccaga      2580
     tgagagctcg ctctataagt cttatgtatt ggggtaatgg ggacaatata tagtagaagt      2640
     tcttaaggga ctagtagcgg ccatccgcac taatatt                               2677
//