ID   FN435999; SV 1; circular; genomic DNA; STD; VRL; 2729 BP.
XX
AC   FN435999;
XX
DT   09-JUN-2010 (Rel. 105, Created)
DT   07-MAR-2015 (Rel. 124, Last updated, Version 2)
XX
DE   Cleome leaf crumple virus segment DNA A, complete sequence
XX
KW   complete genome.
XX
OS   Cleome leaf crumple virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2729
RA   Paprotka T.;
RT   ;
RL   Submitted (12-AUG-2009) to the INSDC.
RL   Paprotka T., Molecular Biology and Virology of Plants, University of
RL   Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, GERMANY.
XX
RN   [2]
RA   Paprotka T., Metzler V., Jeske H.;
RT   "The first DNA 1-like .. satellites in association with New World
RT   begomoviruses in natural infections";
RL   Virology 0:0(2010).
XX
DR   MD5; 7a1c53c040cc86851727cb1baa261a81.
DR   BioSample; SAMEA3283103.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2729
FT                   /organism="Cleome leaf crumple virus"
FT                   /segment="DNA A"
FT                   /host="Cleome affini"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil:Mato Grosso do Sul"
FT                   /lat_lon="20.24 S 56.38 W"
FT                   /collection_date="30-Nov-2007"
FT                   /db_xref="taxon:666144"
FT   CDS             299..1054
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:D7FAZ0"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D7FAZ0"
FT                   /protein_id="CBA18079.1"
FT                   /translation="MPKRDAPWRMPSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMF
FT                   RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDITRGNGITHRVGKRF
FT                   CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTPMDFGQVFNLFDNEPSTATV
FT                   KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSILN"
FT   CDS             complement(1051..1449)
FT                   /gene="AC3"
FT                   /product="replication enhancer"
FT                   /db_xref="GOA:D7FAZ1"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D7FAZ1"
FT                   /protein_id="CBA18080.1"
FT                   /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDRVEVLSSTTRVY
FT                   HVQIRFNHNLRRALALHKAFLNFQVWTVSVTASGQTYLNRFKHLVLWYLNNVGVISLNN
FT                   VIRAVTFATDRPYVRRVRENHSIQFKLY"
FT   CDS             complement(1196..1585)
FT                   /gene="AC2"
FT                   /product="transcriptional regulator"
FT                   /db_xref="GOA:D7FAZ2"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D7FAZ2"
FT                   /protein_id="CBA18081.1"
FT                   /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRVDLNCGCTIYIHLNCAN
FT                   NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRQSGGPVQHDAGVPRPDTVQPQPQESV
FT                   GSPQGVPQLPSLDSIGDSFWADLFK"
FT   CDS             complement(1506..2585)
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:D7FAZ3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:D7FAZ3"
FT                   /protein_id="CBA18082.1"
FT                   /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALSTPTNKKFI
FT                   KVARELHDDGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY
FT                   VDKDGDTLEWGTFQIDGRSARGGCQTANDTYAKVLNAESAAQALQILREEQPRDFVLHL
FT                   DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQAWADEYFALSAEARPNRPISLIVE
FT                   GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA
FT                   QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL
FT                   ESPLYQGATQSGETESHSP"
FT   CDS             complement(2132..2425)
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D7FAZ4"
FT                   /protein_id="CBA18083.1"
FT                   /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTFRELNRA
FT                   PTSSPTSTKTGIHWNGGHSRSTGEVLEAVAKRLTTHTPRSLTPSLQRKHCRF"
XX
SQ   Sequence 2729 BP; 625 A; 648 C; 755 G; 701 T; 0 other;
     accggatggc cgctgattta gttttatgtt cggcccgcgc tagcggaaga cttgggccga        60
     cgatgggcaa aaaactcggc ccagatgaga aaaggtgata aggggaccac gtcccaaaaa       120
     aggaacgcat tgatgggacc acggactgcg aagatgataa ggcccaatcg taattgggca       180
     ccagagccaa gatattcaaa tatacttggc cgctaagctg ataaagcgtt ataaatggga       240
     ccatcacact tcgtggtcta gtcagccccg actaggactc gacgttctgt ggtgcagaat       300
     gcctaagcgg gatgccccat ggcgtatgcc ttccgggacc acgaaggtta gtcgcaacgc       360
     taactactcc cctcgtggag gcacgggctc aaggccaagc agggccgctg cttgggttaa       420
     tcggcccatg ttcaggaagc ccaggatata tcggatgtac aggtcacccg atgtgcccag       480
     aggttgtgaa ggcccgtgca aggtccagtc ttacgagcag cgccacgaca tatcccatgt       540
     cggcaaggtg atgtgcgtgt ctgacattac ccgcggtaat ggtattaccc accgcgttgg       600
     taagcgtttt tgcgtcaagt ctatgtacat cctaggcaag gtctggatgg acgagaacat       660
     caagttgaag aaccacacga acacggtgat gttgtggttg gttagggacc ggagaccgta       720
     cgggacgcct atggattttg gacaggtttt taacctgttt gataacgagc caagcaccgc       780
     tacggtgaag aacgatctac gcgatcgttt tcaggtgctg aacaggttcc acgtcaaggt       840
     gactggtggc cagtacgcga gcaacgagca ggcgctggtt aggcgctttt ggagggtgaa       900
     cacccacgtg acgtataacc accaggaggc ggcgaagtac gagaaccata cggagaacgc       960
     tctgttattg tatatggcat gtactcatgc ctctaaccct gtgtatgcga cgctcaaaat      1020
     tcgaatctat ttctacgatt cgattttgaa ttaataaagt ttgaattgta ttgaatggtt      1080
     ctcgcgtaca cgtcttacat acggtctgtc cgttgcgaag gtgacagcgc ggattacatt      1140
     gttaaggcta ataacgccca cgttatttag gtaccagagg actaaatgtt taaacctatt      1200
     taaataggtc tgcccagaag ctgtcaccga tactgtccag acttggaagt tgaggaacgc      1260
     cttgtggaga gccaacgctc tcctgaggtt gtggttgaac cgtatctgga cgtggtacac      1320
     ccgcgtcgtg ctggacagga cctccactct gtcgtatatc ttgaaataca ggggatttgt      1380
     tatctcccat gtatacacgc cattctccgc ttgaggcgca gtgatgagtt cccctgtgcg      1440
     tgaatccatt attcgcgcag tttaggtgga tgtatatggt acatccacag ttcaggtcta      1500
     cacgtctacg gcgaatggct ctccgtttcg ccactctgtg ttgcaccttg atagagggga      1560
     gattcgagga agacgaacct cgcattgtga agggtccacg accggagtgc tgagttttcc      1620
     tctttctcga ggaagtcttt atagctggac ccttcacctg gattgcaaag cacgattgat      1680
     gggataccgc ctttaatttg aacgggtttc ccgtatttgc agttactttg ccagtctcgt      1740
     tgggccccaa cgagttcttt ccagtgcttt agctttaggt agtgcggggc aacgtcatcg      1800
     atgacgttgt atgcgacttc gtttgagtag accctcgagt tgaagtcgag gtgtccactg      1860
     agataattgt ggggacctaa agcacgtgcc cacatcgttt tccccgtcct cgaatctcct      1920
     tcgacgatca gacttatcgg tctgttcggc cgcgcttcgg cggataaggc gaaatactca      1980
     tcggcccacg cctgcatttc gtccggaacg ttagtgaatg aggacaacgg gaacggaggg      2040
     acccatggtt ccggagcttt ggcgaagatt ttctggacat gtgcttgcac cttgtccaaa      2100
     tggaggacga aatcccgcgg ttgctcttcc cttagaatct gcagtgcttg cgctgcagac      2160
     tcggcgttaa ggaccttggc gtatgtgtcg ttagccgttt ggcaaccgcc tctagcactt      2220
     ctcccgtcga tctggaatgt cccccattcc agtgtatccc cgtctttgtc gacgtaggac      2280
     ttgacgtcgg agctcgattt agctccctga acgttcggat ggaaatgtgc tgaccgggac      2340
     ggggatacca ggtcgaagaa tctttgattc tggcatttga acttcccctc gaattggaga      2400
     agcacgtgga gatgaggctc cccatcgtcg tggagctctc tggcgacctt gatgaatttc      2460
     ttgttcgtcg gcgtcgatag ggcttgcaat tgggaaagtg cttcctcttt ggtcagggag      2520
     cactttggat aggtgaggaa ataatttctg gcgtttatca ggaaacgctt tggcgccgat      2580
     ggcatttttg taaataaggg gtgagaccca atagagagga cccgatagct ctcgctctaa      2640
     cttggtgaaa tgaatcgggg aatgggtcct tatttatagc agagtccgtt agggtatatt      2700
     tgccacgtgt cggccatccg tataatatt                                        2729
//