ID FN432841; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC FN432841; XX DT 27-JUL-2010 (Rel. 105, Created) DT 27-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, genomic RNA, isolate Ng18 XX KW complete genome. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (27-JUL-2009) to the INSDC. RL Fargette D., Ird, Dgpc, BP64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1016/j.virol.2009.08.008. RX PUBMED; 19740507. RA Pinel-Galzi A., Mpunami A., Sangu E., Rakotomalala M.; RT "Recombination, selection and clock-like evolution of Rice yellow mottle RT virus"; RL Virology 394(1):164-172(0). XX DR MD5; 533c9962169693ccdc0d2c8265bf3ba4. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="Ng18" FT /mol_type="genomic RNA" FT /country="Niger" FT /db_xref="taxon:31744" FT CDS 81..554 FT /gene="ORF1" FT /product="Putative movement protein and gene silencing" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:E1UHP1" FT /protein_id="CBA11878.1" FT /translation="MTRLEVLIRPTQQTVAKAIAAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPEKVGWVSVSFACTQCTAHYYTCEQVKCFTNIPPVHYDVVCADCERSVQQDDE FT IDREHDERNAEISACNARALSEGRPATLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..2425 FT /gene="ORF2a" FT /product="Protease and VPg" FT /db_xref="GOA:E1UHP2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1UHP2" FT /protein_id="CBA11879.1" FT /translation="MGSSVVGRFLTRTKETTRVDSSLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFATTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDTPVIACDNPHIDCAFYE FT VPPRIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLKHGVEYAEYDFSGDTIRASSNTWVRERTKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISRARRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVTPSLPTECLSATLENRVSSLENMLGKVSA FT HLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSMKSRESSAKPAR" FT CDS 2092..3606 FT /gene="ORF2b" FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:E1UHP3" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E1UHP3" FT /protein_id="CBA11880.1" FT /translation="MPFSYVGKSGVIFGEHAGKSICAPVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAELGHTCKEYYPCKTKGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSRHEDFEDLWVELLTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEEPTPAWSFGGAPASTGSSGSGLPDIWDGPWSTIF" FT CDS 3446..4165 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:E1UHP4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E1UHP4" FT /protein_id="CBA11881.1" FT /translation="MARKGKKTNSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNTWPLHSVEFLADFKRSSTSANATTYNCVPFNLPRVWNLARCYSMWKPTRW FT DVVYLPEVSATVAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 965 A; 1174 C; 1279 G; 1031 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgct gtgaacgatc cagttctcag tgctgacttc aaccctgaga 240 aggttggttg ggtgtctgtg tcgttcgcct gtactcagtg cacagcccac tactacacgt 300 gtgagcaggt gaagtgtttc accaatatac cgcctgttca ttacgacgtg gtttgtgctg 360 attgcgagcg cagtgttcaa caggacgacg agatcgaccg tgagcacgac gagcgtaacg 420 cagagatctc cgcctgcaac gctcgggctc tgagcgaggg gaggccagca actctggttt 480 acctctctcg agacgcttgc gatatccctg agcactccgg aacgtgccgg tttgataagt 540 acctcaactt ctgagggacc agtcctgccg acatccaagg agcggtcgtg gttcagacta 600 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc agcctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctgccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaattggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagccaat 840 gtccacactt cggtatggca aggtgcagtc tgcccccagg ttcgatccct ctcggggtta 900 tgtggtcgat gtttcgtaca atggccatgt gatcccggtg atattggact ttgccacgac 960 gacagctctg tcggttcccc aaagagtaaa ccccggggtc tcgatggagg caagtcgtgg 1020 agggctcccg ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggttttgta 1080 ccacgactct gtcaggctag gcctaggaac tagggtgcga actcccacag gtcgtgatct 1140 tctcatgacc aatcaccata tcgccgccct agaacctaat ggtatcgcgt acaagggtca 1200 ccttaagaaa gtggctcttg acacgccagt cattgcatgt gacaatcctc acatcgactg 1260 cgcgttttac gaggtacctc ccaggatctg gtctctcctg ggggtcaagt ctgccagttt 1320 gaaacccctg gttaaacaaa ctgcggtgtc actcttcgga ggctcgtcat ctactgactt 1380 ctcgagctgt gttgggatag cccagattgg ggacaacccg ttcctgataa ggcatcaaag 1440 cacgacttgc agtggatggt cgggctcccc gctctaccac aaaggttgcg tggttggctt 1500 gcatataggt gctgcggatg gttacaatgt ggcatctaat gtagcctggt acttccatac 1560 cttcaagaag gaggttgttg ttgagtctcc ctttgagatt tacggcaaat tccgagaagc 1620 aaactccgag gagtacgacg agagtctgaa acacggggtt gagtatgcgg agtatgactt 1680 ctctggtgat accatccggg cgtcttccaa cacctgggtg cgtgagagga cgaagtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct aagctgggca gatcgctttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatat ctagagcgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttctgagt gttctttctc 1920 gtttgagtca gctcacgagg ggattgtccc agagacctcc gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttatccaa 2040 ctcggagaat accgctggga ctccctcggt gactccctcc cttccgacgg aatgcctttc 2100 agctacgttg gaaaatcggg tgtcatcttt ggagaacatg ctgggaaaag tatctgcgca 2160 cctgtcaaag acgcaatctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgatga agtcgagaga 2400 atcctctgcg aaaccggcga ggtaaactcc gcttcctcgc cgggggtgcc gcttgcgggt 2460 cttgccaatt ccaacggcga ggtccgcggg ctagcgagag atttggtgtg tttagctgtg 2520 gtggagcgat tgaatgcttt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaaaggtct ttgcgaccct gtgcgcttgt ttgtcaagaa cgagccacac 2640 ccacggaaga aattgcttga acgtcgattc aggctgattt cctccgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcct cagaacaaca ccgagatttc aacttggtgg 2760 cagtggccct caaagccggg catgggtctt ttgacccctg aacaaatccg tttggtgtgg 2820 gacgatgtgt tccagaagca ccaggcccac cctgcggctg aagcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgaat taacaggggg 2940 aatttccagg gaaacctcag gagggcggct attagccgtt actactgttt tatgaactct 3000 gttttccaac tctcagatgg aaccctcatc cagcaggagt tgcccggatt gatgaaatcc 3060 ggctcttact gcacttcatc cacgaactcg cgtatccgct gcctcatggc tgagctcatc 3120 ggctcgccgt ggtgtatagc gatgggcgac gattccgtgg aggggtggat tgagggagcc 3180 caatccaagt acgctgagct gggtcacacc tgcaaggagt actacccatg taagaccaag 3240 gggcgcgagc tcctggaatt caacttctgt tcacacttga tcaggagggg tcatgccgaa 3300 ctgacttcgt ggccgaaggc gttgtttcgc tttctgtcca gtaggcatga ggattttgaa 3360 gatctgtggg ttgagcttct cacgtgcggg gtgtggagcc ggatcgaacg atatctacgt 3420 gggatagggc gtgtctccca caaagatggc caggaagggc aagaaaacca actccaacca 3480 ggggcagcaa ggaaagaaga agagccgacg cccgcgtggt cgttcggcgg agccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg acggtccctg gtccactatc 3600 ttctaacacc tggccgctcc actccgttga gttccttgcg gacttcaagc ggagttccac 3660 atcggcgaac gcgacgacat acaattgtgt gccgtttaat ttgcctcggg tgtggaatct 3720 tgcacgttgt tactcgatgt ggaagccaac acggtgggat gtcgtctacc tcccggaggt 3780 tagtgcgacg gttgctggga gtatcgagat gtgttttctc tacgactatg ctgacacaat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccact tattaagtgg tggctcagca cgaaatgccg tggtcgcctc 3960 gatggactgt tctcgagtcg gctggaaacg cgttactagt tctattccta gcagcgtgga 4020 tcccaacgtc gtaaacacca tactgccagc aaggctagct gtgcgatcgt cgatcaaacc 4080 gacggttgat gatacgccgg ggaaactcta cgctatcgtc agtatggtcc tgcgggaccc 4140 ggttgatcca acactcaata cgtgaaccgg tcccagtgga gataggtatt ggcaccagtg 4200 atgatccacg gattagctca gagatcgact accctgaaaa ggatgttgag cgtttgcgaa 4260 cgcgagctca atcctacgag atgatactgg cgtctatccc acgtgaggag ttgcactcac 4320 gctttcaatc caaagcaacc catgcactgg atggtgctta cccagatggt tttcggagct 4380 actgggcgga cttttcacaa accgaattcc ccatttcttc cgagagaatt ctcgggatgg 4440 gtgggggag 4449 //