ID FN432840; SV 1; linear; genomic RNA; STD; VRL; 4450 BP. XX AC FN432840; XX DT 27-JUL-2010 (Rel. 105, Created) DT 27-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, genomic RNA, isolate Ma203 XX KW complete genome. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4450 RA Fargette D.; RT ; RL Submitted (27-JUL-2009) to the INSDC. RL Fargette D., Ird, Dgpc, BP64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1016/j.virol.2009.08.008. RX PUBMED; 19740507. RA Pinel-Galzi A., Mpunami A., Sangu E., Rakotomalala M.; RT "Recombination, selection and clock-like evolution of Rice yellow mottle RT virus"; RL Virology 394(1):164-172(0). XX DR MD5; 3d21c06ccb266436256a35937642655e. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4450 FT /organism="Rice yellow mottle virus" FT /isolate="Ma203" FT /mol_type="genomic RNA" FT /country="Mali" FT /db_xref="taxon:31744" FT CDS 81..554 FT /gene="ORF1" FT /product="Putative movement protein and gene silencing" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709L2" FT /protein_id="CBA11874.1" FT /translation="MTRLEVLIRPTQQTVAKAITAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPTKVGWVSVSFACTRCTAHYYTSEQVKCFVNIPPVHYDVVCADCERSVQQDDQ FT IDREHNERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..2425 FT /gene="ORF2a" FT /product="Protease and VPg" FT /db_xref="GOA:E1UHN8" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1UHN8" FT /protein_id="CBA11875.1" FT /translation="MGFSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVTLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERTKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGVVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTAGNPLATPSLPTGCPSATLENRVSSLENTLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSRPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSMKSKESSAKPAK" FT CDS 2092..3606 FT /gene="ORF2b" FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:E1UHN9" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E1UHN9" FT /protein_id="CBA11876.1" FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEEPASTWAFGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:Q9DGX1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9DGX1" FT /protein_id="CBA11877.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNTWPLHSVEFLADFKRSATSADATTYDCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSAAAAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSKTDPNVVNTILPARLAVRSSIKPTVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4450 BP; 985 A; 1172 C; 1272 G; 1021 T; 0 other; acaattaaag ctaggaaagg agcatattgc gagagcgatc cctccttccg ccgaacaatt 60 gtagccacgc tgcatcgtgc atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccattacc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgaacgatc cggttctcag cgccgacttc aaccccacaa 240 aggttggttg ggtgtcagtg tcgtttgcct gtactcggtg cacagctcac tactacacga 300 gtgagcaggt gaagtgtttc gtaaacatcc cacctgtcca ctacgacgtg gtgtgtgctg 360 attgcgagcg cagtgttcag caggacgacc agatcgaccg tgagcacaac gagcgtaacg 420 cagagatttc cgcctgcaac gctcgggccc tgagcgaggg tagaccagca agtttggttt 480 atctttcacg ggacgcttgt gacatacccg agcactccgg aacgtgccgg tttgacaaat 540 acctcaactt ttgaggaatc agtcctgccg acatctaagg agcggtcttg gttcagacta 600 acacgggatg ggcttttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctgccc gtgacggcgt cattatgggc aatcccctca gctatcatag caaactggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagcccat 840 gtccacactt cggtatggca aggttcagtc tgcccctaga ttcgatccct cccggggtta 900 tgtggtcgac gtatcttaca acggccatgt gattccggtg atattggatt tcaccacgac 960 aacagctttg tcggttcccc aaagagtaaa tcctggggtc tcgatggagg caagtcgcgg 1020 ggggctccca ccgacgtccg tcaaactcga agatgtgccg ccgagtgttg tggtcttgta 1080 ccacgactcc gtcaggctag gcctgggaac cagggtgcga actcctacag gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgccct agaacccaat ggtatcgcgt acaagggtca 1200 ccttaagaaa gtgactctgg atgcgccagt catcgcatgt gaccatccac acatagactg 1260 cgcattttac gaggtgcctc ccaagatttg gtctctcttg ggggtcaagt ctgccagttt 1320 gaaacctctg gttaaacaga ctgcggtgtc actcttcgga ggctcgtcat ctactgactt 1380 ctcaagttgt gttgggatcg cccagattgg ggacaatccg ttcctgataa ggcatcaaag 1440 cacgacttgc agtgggtggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 gcatataggt gctgcggatg gttataatgt ggcatctaat gtagcctggt actttcatac 1560 cttcaagaag gaagtggtcg ttgagtctcc attcgagatt tacggcaaat tccgtgaagc 1620 aaactccgag gagtacgacg aaagtctacg acatggagtt gagtatgcag agtacgactt 1680 ctctggtgac accatccggg catcttcaaa tacctgggtg cgtgagagga cgaagtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct tagctgggca gaccgctttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcaca tcccgtagca ccgtcaatat ctaaggcgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttcggagt gctccttctc 1920 gtttgagtca gctcacgagg gggttgtgcc ggagacctca gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttattcaa 2040 ctcggagagt accgctggga atcccttggc gactccctcc cttccgacgg gatgcccttc 2100 agctacgttg gaaaatcggg tgtcgtcttt ggagaacacg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaggccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgatga agtcgaaaga 2400 atcctctgcg aaaccggcga agtgaattcc gcctcctcgc cgggggtgcc gcttgcgggc 2460 cttgccaatt ccaacggtga ggtccgtggg ctagcgagag atttggtatg tttagctgtg 2520 gtagagcgct tgaatgcctt agcctcggtt gacccccgcc agcacaactg gacacccagg 2580 gagctggtag agaaaggtct ttgtgacccc gtgcgcttgt tcgtcaagaa tgagccacac 2640 ccacggaaga aattgcttga acgtcgattc aggctgattt cttctgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcca cagaacaaca ctgagatttc aacttggtgg 2760 cagtggcctt cgaagccggg catgggtctt ctgacccctg aacaaatccg tttggtgtgg 2820 gacgacgtgt tccaaaagca ccaggcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgaat aaacaggggg 2940 aatttccagg gaaacctcag gagggcggct atcagccgct actactgctt tatgaactct 3000 gttttccaac tctcagatgg aaccctcatc cagcaggaac tgcccgggtt gatgaaatcc 3060 ggctcttact gcacttcatc cactaattcg cgtatacgct gtctaatggc tgagctcatc 3120 ggctcgccat ggtgcatagc tatgggcgac gactcggttg aaggatggat tgagggggcc 3180 cagtccaagt acgccgcgtt gggtcacacc tgcaaggagt actacccatg taagaccaga 3240 gggcgcgagc tcctggaatt caacttctgt tcacacttga tcaggagggg tcatgctgag 3300 ctcacttcat ggccgaaggc gttgtttcgc tttctgtcga gcaagcatga ggactttgaa 3360 gatctgtggg ttgagcttca cacgtgcggg gtgtggagcc ggattgaacg atatctgcgt 3420 gggatagggc gagtctccca caaagatggc caggaagggc aagaaaatca actccaacca 3480 ggggcagcaa ggaaagaaga agagccggcg tccacgtggg cgttcggcgg agccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg acggttcctg gtccactatc 3600 ttctaacacc tggccgctcc actccgtgga attcctggcg gattttaagc ggagtgccac 3660 ctcagcagac gcgacgacat acgattgtgt gccgttcaat ctgcctcgag tgtggagtct 3720 tgcgcgttgt tactccatgt ggaagccaac acggtgggat gtcgtttacc tccctgaggt 3780 gagcgcggcg gcagctggaa gtatcgagat gtgttttctc tacgactatg ctgacaccat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcagag ggctgccact tactgagtgg cggctcagca cgaaatgccg tggtcgcctc 3960 gatggattgt tcccgagtcg gctggaaacg tgttactagt tccattccta gtaaaacgga 4020 tcccaacgtc gtaaacacca tactgccagc taggctagct gtgcggtcgt cgatcaaacc 4080 gacggttgat gatacgccgg ggaaactcta cgctattgtc agtatggtcc tgcgggatcc 4140 ggttgatcca acactcaata cgtgaaccgg attccagtag agataggtat tggcaccagt 4200 gatgatccac ggatcggctc agagatcgac taccctgaaa aggatgttga gcgttcctga 4260 acgcgagctt gatcctacga gatgatactg gtgactatcc tacgtgagga gttgcactca 4320 cgccttcaac ccaaagcaac ccaggcactg gatagtgctt acccagatgg ttttcggagc 4380 tactgggcgg acttttcaca aaccgaattc tccattcatt ccgagagaat tctcgggatg 4440 ggtgggggag 4450 //