ID FN432839; SV 1; linear; genomic RNA; STD; VRL; 4448 BP. XX AC FN432839; XX DT 27-JUL-2010 (Rel. 105, Created) DT 27-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, genomic RNA, isolate Ke12 XX KW complete genome. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4448 RA Fargette D.; RT ; RL Submitted (27-JUL-2009) to the INSDC. RL Fargette D., Ird, Dgpc, BP64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1016/j.virol.2009.08.008. RX PUBMED; 19740507. RA Pinel-Galzi A., Mpunami A., Sangu E., Rakotomalala M.; RT "Recombination, selection and clock-like evolution of Rice yellow mottle RT virus"; RL Virology 394(1):164-172(0). XX DR MD5; 50fb9b8bf59301351bec6d77f39ac550. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4448 FT /organism="Rice yellow mottle virus" FT /isolate="Ke12" FT /mol_type="genomic RNA" FT /country="Kenya" FT /db_xref="taxon:31744" FT CDS 83..556 FT /gene="ORF1" FT /product="Putative movement protein and gene silencing" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:E1UHN3" FT /protein_id="CBA11870.1" FT /translation="MTRLEVLIRPTEQTVAKAIAVGYTHALTWVWYPQTWDVDSVNDPV FT LRADFNPDRVGWVTVSFACTQCTAHHYTCEQVKFFTDIPSVHYDVVCADCERRVQRDDE FT IDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPGHSGTCRYNRYLNF" FT CDS 610..2427 FT /gene="ORF2a" FT /product="Protease and VPg" FT /db_xref="GOA:E1UHN4" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1UHN4" FT /protein_id="CBA11871.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVREREKYHAEERRKSGQPSWADRFGDDDG FT EDVDIETSHPVAPSISKTRQKRSKRIEQFVDAVSECSFSFESAHEEVTPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTNGTPLETPFLPTACHSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQLLKDLAGLREGVKQSSTPSSSKPAGSTERYVPPGSRKQSGHSKKGTQK FT SPLGVASGTSGGSTTSSMKSKESSAKPAK" FT CDS 2094..3605 FT /gene="ORF2b" FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:E1UHN5" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E1UHN5" FT /protein_id="CBA11872.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAIPVFPALEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAEAVRSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNTASSPGVPLAGLANSNGEVRKLGRDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIEQYLRGIGRVSHKDGQEGQE FT NQLQPKPARQEEPTSPWAFGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3448..4167 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:E1UHN6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E1UHN6" FT /protein_id="CBA11873.1" FT /translation="MARKGKKTNSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGM FT VPGPLSSNVWPVNRSVEFLMDFKRSATSADATIFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSKVDPNVVNTILPARLAVRSSIKPAVDDAPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4448 BP; 985 A; 1160 C; 1272 G; 1031 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccgcgc tgctcgtcgt gcatgacacg gttggaagtt cttatacgac cgacagagca 120 gaccgtggca aaagccatcg ccgtgggcta tacgcacgca ctcacctggg tttggtatcc 180 gcagacctgg gacgttgatt ctgtgaacga tccagttctc agagccgact tcaaccctga 240 tagggttggt tgggtgaccg tgtcgtttgc ctgtacccag tgcacagctc atcactatac 300 gtgtgagcag gtgaagttct tcaccgacat cccgtcagtt cattacgacg tggtgtgtgc 360 tgattgcgag cgccgtgttc agcgggacga cgagatcgac cgtgagcacc aagagcgtaa 420 cgcagaaatc tctgcttgca acgctcgagc tttgagtgag ggaagaccag caagtctggt 480 gtacctttct cgggacgctt gtgatatccc tgggcactcc ggaacgtgcc ggtacaacag 540 gtacctcaac ttttgaggtc gccaacctgc cgacatctaa ggaacggtct tggctcagac 600 taacacggga tgggctcttc tgttgttggt cgctttctca ctcgaaccaa ggaaacgacg 660 agggtggatt ccaacctcct catcgtcttg gctgggttga tagcggccgc gatagtttca 720 gagcgcctac ccgtgacggc gtcattgtgg gcaatcccct cagctatcat agcaaattgg 780 atcgtgctgt cagctcacga gagcttcagc cggttcgtgg agggggttga ggttgaacct 840 atgtcaacac ttcggtatgg caaggttcaa tccgctccac ggttcgatcc ctcccggggt 900 tatgtggtcg atgtctctta caacggtcac gtgattccgg tgatattgga cttcaccacg 960 acgacagctc tgtcggttcc ccaaagagta aaccctgggg tctcgatgga ggcaagtcgt 1020 ggggggctcc caccgacgtc cgtcaaactc gaagatgtgc cgccgagcgt tgtggtcttg 1080 taccacgact ccgtcaggct aggcctggga actagggtgc gaactcccac aggtcgtgat 1140 ctcctcatga ccaatcacca tatcgctgcc ctggaaccca atggtatcgc gtacaagggt 1200 cacctcaaga aggtggctct tgacgcgcca gtcattgcat gtgaccatcc acacatagac 1260 tgcgcgtttt acgaggtacc tcccaagatt tggtctctct tgggggtcaa gtctgccagt 1320 ttgaaacctt tggttaaaca aactgcggtg tcactcttcg gtggctcgtc atctactgac 1380 ttctcaagtt gtgttgggat agcccagatt ggggacaatc cgtttctgat aaggcatcaa 1440 agcacaacct gcagtggatg gtcgggctcc ccgctctacc acaaaggttg cgtggttggc 1500 ttgcatatag gtgctgcgga tggttataat gtggcatcta atgtagcctg gtacttccat 1560 accttcaaga aggaagtggt cgttgagtct ccttttgaga tctacggcaa attccgggag 1620 gcgaactccg aggagtatga cgagagtcta cgacacggag ttcaatatgc ggagtatgac 1680 ttctctggtg ataccattcg ggcgtcttca aacacctggg tgcgtgagag agagaagtac 1740 cacgccgagg aacgtcgtaa gtccggccag cctagctggg cagaccgttt tggtgacgac 1800 gatggcgagg atgtcgatat cgagacatcg catcccgtag caccgtcaat atctaaaacg 1860 cggcagaaac ggtcaaagcg cattgagcag ttcgtcgatg cggtttctga gtgttctttc 1920 tcgttcgagt cagctcacga ggaggtgacc ccagagacct cagcttatga ccacgttcct 1980 ttaaactgcc agggggcggg ctcgagccta cgggcgagtc cgcccttgga cggcttatcc 2040 aactcggaga ataccaatgg gactcccttg gagactccct tccttccgac ggcatgccat 2100 tcagctacgt tggaaaatcg ggtgtcatct ttggagaaca tgctgggaaa agtgtctgcg 2160 cagctgtcaa agacgcaatc ccagtattcc cagctcttga aggatttggc tggcctgaga 2220 gagggagtaa agcagagctc gactccctca tcctccaagc cggccggttc aacagaacgg 2280 tatgtccctc cgggctcgcg gaagcagtcc ggtcactcca agaaaggtac ccaaaagtcc 2340 cccctaggcg ttgcctcagg gacgagtgga ggttcgacga catcttcgat gaagtcgaaa 2400 gaatcctctg cgaaaccggc gaagtgaata ccgcttcctc gccgggggta ccgcttgcgg 2460 gtcttgccaa ttcaaacggt gaggttcgca agctggggag agatttggta tgtttagctg 2520 tggtagagcg actgaatgcc ttagcctcgg ttgacccccg ccagcataac tggacaccca 2580 gggagctggt agagaaaggt ctttgcgacc ctgtgcgctt gtttgtcaag aacgagccac 2640 acccacagaa gaaattgcgt gaacgtcgat tcaggctgat ttcttctgtt tctctagttg 2700 accagctggt ggagcggatg cttttcgggc ctcagaacaa caccgagatc tcaacttggt 2760 ggcagtggcc ttcgaagccg ggcatgggtc tgttgactcg tgaacaaatc cgtctggtgt 2820 gggacgatgt gttccagaag caccaagccc accctgcggc tgaggcagac atatcggggt 2880 ttgactggtc cgttcaggac tgggagttgt ggtcagacct cgcgatccga atcaacagag 2940 ggagtttctc aggaaacctc aggaaagcgg ccatcagccg ttattactgt ttcatgaact 3000 ctgttttcca gctctcagat ggaaccctca tccagcagga gttgcccgga ttgatgaaat 3060 ccggctctta ttgcacctct tcaacaaatt cacgcatacg ctgtctcatg gctgagctca 3120 tcggctcacc gtggtgtata gctatgggtg atgattccgt ggaggggtgg atcgaggggg 3180 cccaatccaa gtacgccgcg ctaggtcaca cctgcaagga gtactaccca tgtaagacca 3240 ggggccgcga gctcctggaa ttcaacttct gttcacactt gatcaggagg ggtcatgctg 3300 agctaacttc atggccgaag gcgttgtttc gctttctgtc tagcaagcat gaggattttg 3360 aagatctgtg ggttgagctt cacacgtgcg gggtgtgggg taggatcgaa caatatctac 3420 gtgggatagg gcgtgtctcc cacaaagatg gccaggaagg gcaagaaaac caactccaac 3480 caaaaccagc aaggcaagaa gagccgacgt ccccgtgggc gttcggcgga gccccggctt 3540 caacgggctc cagtggctca ggcctcccgg atatctggga tggttcctgg tccactatct 3600 tctaacgtct ggccggttaa ccgctccgtg gaattcctga tggattttaa acggagcgcc 3660 acctcggcgg atgcgaccat attcaactgt gtgccgttta atctgccccg agtgtggagt 3720 cttgcgcgtt gttactcctt gtggaagcca acaaggtggg atgtcgtcta cctccctgag 3780 gttagtgcgg cgacagctgg aagtatcgag atgtgttatc tctacgacta tgctgacact 3840 atcccaagtg acacgggtaa gatgagcagg acggcgggct tcgtcacctc cagcgtttgg 3900 tacggcgcgg agggctgcca tttgttaact ggcggctcag cacgaaatgc cgtggtcgcc 3960 tcgatggact gttctcgagt cgactggaaa cgcgttacta gttcaattcc tagtaaagtg 4020 gatcccaacg tcgtaaacac catactgcca gctaggctag ctgtgcggtc gtcgattaaa 4080 ccggcggttg atgatgcacc aggcaagctg tatgccatcg tcagtatggt cctgcgggac 4140 ccggttgacc caacactcaa tacgtgaacc ggacccagtg gaggcaggta ttggcatcgg 4200 tgatggccaa cggactaact cagagatcga ctaccctgaa aaggatgttg agcgtttacg 4260 aacgcgggtt cagtcctaag agggcatatc ggtgtctgcc ccacgtgagg agttgcactc 4320 acattaaccc aaagcaaccc agacactgga tagtgtttac ccggctggtt tcggagctgc 4380 cgggaggacc tttgcacact ccgaattccc catttcatcc gagagaattc tcgggatggg 4440 tgggggag 4448 //