ID FN432838; SV 1; linear; genomic RNA; STD; VRL; 4450 BP. XX AC FN432838; XX DT 27-JUL-2010 (Rel. 105, Created) DT 27-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, genomic RNA, isolate Ga4 XX KW complete genome. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4450 RA Fargette D.; RT ; RL Submitted (27-JUL-2009) to the INSDC. RL Fargette D., Ird, Dgpc, BP64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1016/j.virol.2009.08.008. RX PUBMED; 19740507. RA Pinel-Galzi A., Mpunami A., Sangu E., Rakotomalala M.; RT "Recombination, selection and clock-like evolution of Rice yellow mottle RT virus"; RL Virology 394(1):164-172(0). XX DR MD5; 732f9b46593c1d9822eab28ac00e3183. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4450 FT /organism="Rice yellow mottle virus" FT /isolate="Ga4" FT /mol_type="genomic RNA" FT /country="Gambia" FT /db_xref="taxon:31744" FT CDS 81..554 FT /gene="ORF1" FT /product="Putative movement protein and gene silencing" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:E1UHM9" FT /protein_id="CBA11866.1" FT /translation="MTRLEVLIRPTQQTVAKAIAAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPERVGWVSVSFACTQCTAHYYTSEQVKYFINIPPVHYDVVCADCERSVQLDDE FT IDREHNERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 609..2426 FT /gene="ORF2a" FT /product="Protease and VPg" FT /db_xref="GOA:E1UHN0" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1UHN0" FT /protein_id="CBA11867.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPRIWSLLGVKSASLNPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQPSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVIPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTHSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKGTQK FT SPPGDASGTSGGSTTSSTKSKESSAKPAK" FT CDS 2093..3607 FT /gene="ORF2b" FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:E1UHN1" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E1UHN1" FT /protein_id="CBA11868.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDALSVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFTGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRLRCIMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLVRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGSARKEEEPTPSRAFGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3447..4166 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:E1UHN2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E1UHN2" FT /protein_id="CBA11869.1" FT /translation="MARKGKKTSSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT MVPGPLSSNTWPIHSVEFLADFKRSSTSADATTYDCVPFNLSRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG FT SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTADDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4450 BP; 976 A; 1151 C; 1272 G; 1051 T; 0 other; tcaattgaag ctaggaaagg agcatattgc gtaagcgatc cctccttccg acgaacaatt 60 gtagccactc tgcctcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgaacgatc cagttctcag cgccgacttc aaccccgaga 240 gggttggttg ggtgtccgtg tcgtttgcct gtactcagtg tacggctcac tactacactt 300 ctgagcaggt gaaatatttc attaatattc cgcctgtcca ctacgacgtg gtgtgtgccg 360 attgcgagcg tagtgttcag ctggacgacg agatcgaccg cgaacacaac gagcgtaacg 420 cagagatttc tgcctgcaac gcccgagctc tgagcgaggg gagaccagca agtttggtct 480 acctttctcg agacgcttgc gacatacctg agcactccgg aacgtgccgg tttgacaagt 540 acctcaactt ttgagggaat cagtcctgcc gacgtctaag gagcggtctt ggttcagact 600 aacacgggat gggctcttct gttgttggtc gctttctcac tcgcaccaag gaaacgacga 660 gggtggactc caacctcctc atcgtcttgg ctgggttgat agcggccgcg atagtctcag 720 agcgcctgcc cgtgacggcg tcattgtggg caatcccctc agctatcata gcaaactgga 780 tcgtgttgtc agctcacgag agcttcagcc ggttcgttga gggggttgag attgagccta 840 tgtccacact tcggtatggc aaggttcagt ctgctcccag gtttgatccc tcccgaggtt 900 atgtggttga cgtgtcttac aacggccatg tgattccggt gatattagac ttcaccacga 960 caacagcctt gtcggttccc caaagagtaa atccgggggt ctcgatggag gcgagtcgtg 1020 gggggctccc accgacgtcc gtcaaactcg aagatgtgcc gccgagcgtt gtggttttat 1080 accacgactc cgtcaggctt ggcttgggaa ctagggtgcg aactcccaca ggtcgtgatc 1140 ttctcatgac caatcaccat atcgctgctt tagaacccaa tggtatcgcg tacaagggcc 1200 accttaagaa agtggctttg gacgcgccag tcattgcatg tgaccatcca cacatagact 1260 gcgcgtttta cgaggtgcct cctaggattt ggtctctcct gggcgtcaag tctgccagtt 1320 tgaatcctct ggttaaacag actgcggtgt cactcttcgg tggctcgtca tccactgact 1380 tctcaagttg tgtcgggata gcccagattg gggataaccc gttcctgata aggcatcaaa 1440 gcacgacttg cagtgggtgg tcgggctccc cgctctacca caaaggttgt gtggttggtt 1500 tgcatatagg tgctgcggat ggttataatg tggcatctaa tgtggcctgg tacttccata 1560 ccttcaagaa ggaagtggtc gtggagtctc cttttgagat ctatggcaaa ttccgtgaag 1620 caaactccga ggaatatgac gagagtctac gacacggggt tcagtatgcg gagtacgact 1680 tctctggtga taccatccgg gcgtcttcaa acacctgggt gcgtgagaga gagaggtacc 1740 acgctgagga acgtcgtaag tccggccagc ctagctgggc agatcgtttt ggtgacgaca 1800 gtggcgagga tgttgatatc gagacatcgc atcccgtagc accgtcaata tctaaaacgc 1860 ggcggaaacg gtcaaagcgc gttgagcagt tcgtcgacgc ggtttcagag tgctccttct 1920 cgttcgagtc agctcacgag gggattgtgc ctgagacctc agcctatgac cacgttcctt 1980 taaactgcca gggggcgggc tcgagccttc gggcgagtcc gcccttggac ggcttatcca 2040 actcggagaa taccgctggg actccctcgg tgattccctc ccttccgacg gaatgccctt 2100 cagctacgtt ggaaaatcgg gtgtcatctt tggagaacat gctgggaaaa gtgtctgcgc 2160 agctgtcaaa gacgcactct cagtattccc agatcttgaa ggatttggct ggcctgagag 2220 gggaagtaaa gcagagcttg actccctcat cctccaagcc ggccggttca acagaacggt 2280 atgtccctcc gggctcgcgc aagcagtcca atcactccaa gaaaggtacc caaaagtccc 2340 ccccaggcga tgcctcaggg acgagtggag gttcgacgac atcttcgacg aagtcgaaag 2400 aatcctctgc gaaaccggcg aagtgaattc cgcttcttcg ccgggggtgc cgctcgcggg 2460 ccttgccaat tccaacggtg aggtccgagg gctggcgaga gatttggtat gtttagctgt 2520 ggtagagcgt ttgaatgcct tagcctcggt tgacccccgc cagcataact ggacacccag 2580 ggagctggta gagaaaggtc tctgcgaccc agtgcgcttg tttgtaaaga acgagccgca 2640 cccacggaag aaattgcttg aacgtcgatt caggctgatc tcttctgtat ctctagttga 2700 ccagctggtg gagcgaatgc ttttcgggcc tcagaacaac accgagattt ctacttggtg 2760 gcagtggccc tcgaagccgg gcatgggtct tttgacccct gaacaaattc gtttggtgtg 2820 ggacgatgtg ttccaaaagc accaggccca ccctgcggct gaggcagaca tatcggggtt 2880 tgactggtcc gttcaggact gggagctgtg gtcagacctc gcgatccgaa taaacagagg 2940 aaattttaca ggaaacctca ggaaagcggc tattagtcgc tattactgtt ttatgaactc 3000 tgttttccaa ctctcagatg gaaccctcat ccagcaggag ttgcccgggc tgatgaagtc 3060 cggctcttac tgcacctcat ccactaattc gcgactacgc tgtataatgg ctgagctcat 3120 cggctcacca tggtgcatag ctatgggcga tgattcggtg gaggggtgga ttgagggggc 3180 ccagtccaag tacgctgcgc taggtcacac ctgcaaggag tactacccat gtaagaccag 3240 agggcgtgag ctcctggaat tcaacttctg ttcacatttg gtcaggaggg gtcatgctga 3300 gctcacttca tggccgaagg cgttgtttcg ttttctgtcg agcaagcatg aggactttga 3360 agatctgtgg gttgagcttc acacgtgcgg ggtgtggagc cggattgaac ggtatctgcg 3420 tgggataggg cgagtctccc acaaagatgg ccaggaaggg caagaaaacc agctccaacc 3480 agggtcagca aggaaagaag aagagccgac gccctcgcgg gcgttcggcg gagccccagc 3540 ttcaacgggc tccagtggct caggcctccc ggatatctgg gatggttcct ggtccactat 3600 cttctaacac ctggccgatc cactccgtag aattcctagc ggattttaag cggagttcca 3660 catcagcgga tgcgacgaca tatgattgtg tgccgttcaa tttgtcgcgg gtgtggagtc 3720 ttgcacgttg ttactcactg tggaagccaa cacggtggga tgtggtctac ctcccagagg 3780 ttagcgccgc gacagctgga agtatcgaga tgtgttatct ctacgactac gctgacacca 3840 tcccaagtga cacgggcaag atgagcagga cggcgggctt cgtcacctct agcgtttggt 3900 acggcgcgga gggctgccat ttgttgaatg gtggttcagc acgaaatgcc gtggtcgcct 3960 cgatggattg ttcccgagtc ggctggaaac gcgttactag ctctattcct agtagcgtgg 4020 atcccaacgt cgtaaacacc atactaccag ctaggctagc tgtgcggtcg tcgatcaaac 4080 cgacggctga cgatacgccg gggaaactct acgctatcgt tagtatggtc ctgcgggatc 4140 cggttgatcc aacactcaat acgtgaaccg gatctagtag agataggtat tggcactagt 4200 gatgatccac ggatcagccc agagatcgac taccctgaaa aggatgttga gcgttttcga 4260 acgcgggctc gatcctacga gatgatactg gtgactatcc tacgtgagga gttgcactca 4320 cgctttcaac ccaaagcaac ccatgcactg gatagtgctt acccagatgg ttttcggagc 4380 tactgggcgg acttttcaca aaccgaattc tccatttctt ccgagagaat tctcgggatg 4440 ggtgggggag 4450 //