ID FN432837; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC FN432837; XX DT 27-JUL-2010 (Rel. 105, Created) DT 27-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, genomic RNA, isolate Ch28 XX KW complete genome. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (27-JUL-2009) to the INSDC. RL Fargette D., Ird, Dgpc, BP64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1016/j.virol.2009.08.008. RX PUBMED; 19740507. RA Pinel-Galzi A., Mpunami A., Sangu E., Rakotomalala M.; RT "Recombination, selection and clock-like evolution of Rice yellow mottle RT virus"; RL Virology 394(1):164-172(0). XX DR MD5; d8978b521712d42bcdcbd849d32afe27. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="Ch28" FT /mol_type="genomic RNA" FT /country="Chad" FT /db_xref="taxon:31744" FT CDS 81..554 FT /gene="ORF1" FT /product="Putative movement protein and gene silencing" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:E1UHM5" FT /protein_id="CBA11862.1" FT /translation="MTRLEVLIRPTQQTVAKAIAAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFSPERVGWVSVSFACTQCTAHYYTCEQVKYFVNIPPVHYDVVCADCERSVQQDDE FT IDREHNERNAEISACNARALSEGRPATLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..2425 FT /gene="ORF2a" FT /product="Protease and VPg" FT /db_xref="GOA:E1UHM6" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1UHM6" FT /protein_id="CBA11863.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPRIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLKHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRIEQFVDAVSECSFSFESAHEGITPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVIPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKGTQK FT SPPGDVSGTSGGSTTSSTKSKESSAKPAK" FT CDS 2092..3606 FT /gene="ORF2b" FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:E1UHM7" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E1UHM7" FT /protein_id="CBA11864.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEGPTPTWALGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:E1UHM8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E1UHM8" FT /protein_id="CBA11865.1" FT /translation="MARKGKKTNSNQGQQGKKKGRRPRGRSAEPQLQRAPVAQASRISG FT MVPGPLSSNTWPLHSVEFLADFKRSSTSADATTYNCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSATVAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDAPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 964 A; 1166 C; 1289 G; 1030 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gcgggctaca cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgtcgacgct gtgaacgatc cggttcttag cgccgatttc agcccagaga 240 gggttggttg ggtgtcagtg tcgtttgcct gtactcagtg tacggcgcat tactacacgt 300 gtgagcaggt gaaatatttc gtcaatatcc cacctgttca ctacgacgtg gtgtgtgctg 360 attgcgagcg cagtgttcag caggacgacg aaatcgaccg cgaacacaac gagcgtaacg 420 cagagatttc cgcctgcaac gctcgggctc tgagtgaagg gcggccagca actctggtct 480 acctctctcg ggacgcttgc gatatacctg agcactccgg aacgtgccgg ttcgacaagt 540 acctcaactt ttgagggatc agtcctgccg acatctaagg agcggtcttg gttcagacta 600 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctgccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaactggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagcctat 840 gtccacgctc cgatatggta aggttcagtc tgcccctagg ttcgacccct cccggggtta 900 tgtggttgac gtgtcataca acggccacgt gatcccggtg atattggact tcaccacgac 960 gacggctctg tcggttcccc aaagagtaaa tcctggggtc tcgatggagg cgagtcgcgg 1020 ggggctccct ccgacgtccg tcaaactcga agatgtgccg ccgagtgttg tggttctata 1080 ccacgactct gtcaggctag gcctaggaac tagggtgcgt actcctacgg gtcgtgatct 1140 tctcatgacc aatcaccata tcgctgctct agaacctaat ggcatcgcgt acaagggtca 1200 ccttaagaaa gtggccctgg acgcgccagt cattgcatgt gaccatccac acatagactg 1260 cgcgttttac gaggtgcctc ccaggatctg gtctctcctg ggggtcaagt ctgccagttt 1320 gaagcctttg gttaagcaaa ctgcggtgtc actcttcgga ggctcgtcat ctactgactt 1380 ctcaagttgt gttggaattg cccagattgg ggataatccg ttcctgataa ggcatcaaag 1440 cacgacttgc agtggatggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 acatataggt gctgcggatg gttataatgt ggcatctaat gtagcctggt acttccatac 1560 cttcaagaag gaggttgtcg ttgagtctcc ctttgagatt tacggcaagt tccgtgaagc 1620 aaactccgag gagtatgacg aaagtctgaa acacggggtt gagtatgcgg agtatgattt 1680 ctctggtgat accatccggg cgtcttccaa cacctgggtg cgcgagagag agagatacca 1740 cgctgaggaa cgtcgtaagt ccggccagct tagctgggca gatcgttttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcaca tcccgtagca ccgtcaatat ctaagacgcg 1860 gcggaaacgg tcaaagcgca ttgagcagtt cgtcgatgcg gtttcggagt gctccttttc 1920 gttcgagtca gctcacgaag ggattacccc ggagacctct gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttatccaa 2040 ctcggagaat accgctggga ctccctcggt gattccctcc cttccgacgg aatgcccttc 2100 agctacgttg gaaaatcggg tgtcatcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaggtaccc aaaagtcccc 2340 cccaggcgat gtctcaggga cgagtggagg ttcgacgaca tcttcgacga agtcgaaaga 2400 atcctctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggttcc gctcgcgggc 2460 ctcgccaatt ctaacggtga ggtacgtggg cttgcgagag atttggtatg tttagctgtg 2520 gtggagcgat tgaatgcctt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaagggcct ttgcgaccca gtgcgcttgt tcgttaagaa cgagccgcac 2640 ccccggaaga aattgcttga acgtcgattc aggctgatct cttctgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcct cagaacaaca ccgagatttc aacttggtgg 2760 cagtggccct caaagccggg catgggtctt ttgacccctg aacagatccg tttggtgtgg 2820 gatgatgtat tccagaaaca ccaggcccac cctgcggctg aggcagacat atcggggttt 2880 gattggtccg tacaggactg ggagttgtgg tcagacctcg cgatccgaat aaacaggggg 2940 aattttcagg gaaacctcag gagggcggcg atcagtcgct actactgttt tatgaactct 3000 gttttccaac tctcagatgg aaccctcatc cagcaggagt tgccaggact gatgaagtcc 3060 ggttcttact gcacctcatc cacgaactcg cgcatccgct gtctcatggc tgagcttatc 3120 ggctcgccat ggtgcatagc gatgggcgat gattctgtgg agggatggat tgagggggcc 3180 caatccaagt acgccgcgct gggtcacacc tgcaaggagt actacccatg caagaccagg 3240 gggcgcgagc tcctggaatt caacttctgt tcacacttga tcaggagggg tcatgctgag 3300 ctgacttcat ggccgaaggc gttgtttcgc tttctgtcca gcaagcatga ggattttgaa 3360 gatctgtggg ttgagctcca cacgtgcggg gtgtggggca ggatcgaacg atatctgcgt 3420 gggatagggc gtgtctccca caaagatggc caggaagggc aagaaaacca actccaacca 3480 ggggcagcaa ggaaagaaga agggccgacg cccacgtggg cgctcggcgg agccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg atggttcctg gtccactatc 3600 ttctaacacc tggccgctcc actccgttga gttccttgcg gacttcaaac ggagttccac 3660 atcggcagac gcgacgacat acaattgtgt gccgttcaat ctgcctcggg tgtggagtct 3720 tgcgcgttgt tactccatgt ggaagccaac acggtgggat gtcgtctacc tcccagaggt 3780 tagcgcgaca gttgcgggga gtatcgagat gtgttttctc tacgactacg ctgacacaat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccact tgttgagtgg cggctcagca cggaatgccg tggtcgcctc 3960 gatggactgt tctcgagtcg gctggaaacg cgttactagt tccataccta gtagcgtgga 4020 tcccaacgtc gtaaatacca tactgccagc aaggctagct gtgcgatcgt cgatcaaacc 4080 gacggttgac gatgcgccgg ggaaactcta cgcgatcgtt agtatggtcc tgcgggatcc 4140 ggttgatcca acactcaata cgtgaaccgg tcccagtgga gataggtatt ggcaccagtg 4200 atgatccacg gattagctca gagatcgact accctgaaaa ggatgttgag cgtttgcgaa 4260 cgcgggccta atcctacgag atgatgctgg tgactatccc acgtgaggag ttgcactcac 4320 gctttcaatc caaagcaacc catgcactgg atagtgctta cccagatggt tttcggagct 4380 actgggtgga cttttcacaa accgaattcc tcatgtcttc cgagataatt ctcgggatgg 4440 gtgggggag 4449 //