Dbfetch

Dbfetch

ID   FN424175; SV 1; linear; genomic RNA; STD; VRL; 996 BP.
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AC   FN424175;
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DT   29-JUN-2011 (Rel. 109, Created)
DT   29-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Plum pox virus partial polyprotein, coat protein region, genomic RNA,
DE   isolate APR 60
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KW   .
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OS   Plum pox virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
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RN   [1]
RP   1-996
RA   Varga A.;
RT   ;
RL   Submitted (29-JUN-2009) to the INSDC.
RL   Varga A., Centre for Plant Health, Canadian Food Inspection Agency, 8801
RL   East Saanich Road, Sidney, British Columbia, V8L 1H3, CANADA.
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RN   [2]
RA   Matic S., El Maghraby I., Law V., Varga A., Reed C., Myrta A., James D.;
RT   "Serological and molecular characterization of isolates of Plum pox virus
RT   El Amar strain to better understand its diversity, evolution, and unique
RT   geographical distribution";
RL   Unpublished.
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DR   MD5; bf83bebbfb2d8cd5acca38d5cb3da7ce.
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FH   Key             Location/Qualifiers
FH
FT   source          1..996
FT                   /organism="Plum pox virus"
FT                   /host="Prunus armeniaca cv. Amar"
FT                   /isolate="APR 60"
FT                   /mol_type="genomic RNA"
FT                   /country="Egypt:El Amar, Nile Delta"
FT                   /db_xref="taxon:12211"
FT   CDS             <1..>996
FT                   /product="polyprotein"
FT                   /db_xref="GOA:F8J3A1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:F8J3A1"
FT                   /protein_id="CAZ66780.1"
FT                   /translation="ADEKEDDEEEVDAGRPLVTTTQQPTVTTTTQQTPITSATLQATQA
FT                   MFNPIFTPATTEPATRTVPHTTTTTPPSFGVIGNEDTAPNASNALIQTGRDRDVDAGSI
FT                   GTFTVPRLKAMTSKLSLPKVKGKAIMNLNHLAFYSPAQVDLSNTRAPQSCFQTWYEGVR
FT                   RDYDVTDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFR
FT                   QIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREA
FT                   HIQMKAAALRNAQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGMRGV"
FT   mat_peptide     1..996
FT                   /product="coat protein"
XX
SQ   Sequence 996 BP; 308 A; 218 C; 241 G; 229 T; 0 other;
     gctgatgaga aggaagacga tgaagaagaa gtggatgcag ggaggccttt agtcaccact        60
     acacagcagc caactgttac cacaacaact cagcaaactc caataacgag tgcaacctta       120
     caagctacgc aagcaatgtt taatcccatc ttcactccag cgacgactga gccggccact       180
     aggacagtgc ctcacacaac aactactaca cctccttctt ttggagtgat cgggaatgag       240
     gatactgcac ccaatgcttc caatgcctta atccaaacag gcagagacag agatgttgat       300
     gcgggttcca ttgggacttt cacagtgcca cgcttgaaag caatgacatc aaaactctca       360
     cttccaaagg tgaaagggaa agcaattatg aatttgaatc acctggcttt ctacagtcct       420
     gcacaggtgg atttgtcgaa cacgcgagct ccacagtcct gctttcaaac atggtacgaa       480
     ggagttagac gtgactatga cgtcactgat gatgaaatga gcattatttt gaatgggctt       540
     atggtctggt gcattgagaa tggaacatcc ccgaatatta atggaatgtg ggtcatgatg       600
     gacggggaga cacaagtgga gtatccaata aagccattgt tggatcatgc gaaacccact       660
     tttagacaaa ttatggcaca tttcagtaac gtggctgaag cgtatattga aaaacggaat       720
     tatgagaaag catacatgcc aaggtatggt attcagcgca acctgacgga ttacagcctc       780
     gccagatacg cctttgattt ttatgaaatg acttcaacga cacctgtgcg tgcacgtgaa       840
     gctcatatac agatgaaggc agcggcattg agaaatgccc agaatcgttt atttggcttg       900
     gatggaaatg ttggaacaca agaagaggac acagagaggc acaccgctgg tgatgttaat       960
     cgcaacatgc ataacctcct cggtatgagg ggagtg                                 996
//