Dbfetch
ID FN391552; SV 1; linear; genomic RNA; STD; VRL; 3226 BP. XX AC FN391552; XX DT 02-NOV-2009 (Rel. 102, Created) DT 17-JUL-2010 (Rel. 105, Last updated, Version 2) XX DE Raspberry leaf mottle virus CPh gene (partial), CPm gene, CP gene and P20 DE gene (partial), genomic RNA, isolate PM1 XX KW . XX OS Raspberry leaf mottle virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RP 1-3226 RA MacFarlane S.A.; RT ; RL Submitted (01-MAY-2009) to the INSDC. RL MacFarlane S.A., Plant Pathology, SCRI, INvergowrie, Dundee, DD2 5DA, RL UNITED KINGDOM. XX RN [2] RX DOI; 10.1111/j.1744-7348.2010.00401.x. RX AGRICOLA; IND44358422. RA McGavin W.J., MacFarlane S.A.; RT "Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf RT spot virus and the closterovirus Raspberry mottle virus"; RL Ann. Appl. Biol. 156(3):439-448(2010). XX DR MD5; c963455ef73edab756bf1159dbe0cf6c. XX FH Key Location/Qualifiers FH FT source 1..3226 FT /organism="Raspberry leaf mottle virus" FT /isolate="PM1" FT /mol_type="genomic RNA" FT /country="United Kingdom:Scotland, Alyth" FT /identified_by="S. MacFarlane" FT /db_xref="taxon:326941" FT CDS <1..1381 FT /codon_start=2 FT /transl_table=1 FT /gene="CPh" FT /product="coat protein homologue" FT /db_xref="GOA:D0R6H7" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:D0R6H7" FT /protein_id="CAY54350.1" FT /translation="VTSAQMWAAPQGTLLNELAYLYCSDTIFGWSRRTGVDIKTLLRGI FT ESRTTAPPEMIPADAAKEGCRFSLHDVESFLRSGNFHVDALTIEHSWALSNACGRLVNP FT NDVKEFKGMVYDPSLDTTKLSVLSSEMGDYLGHCMELYKRHVITKSDEVTVRKEVFLWI FT EAILNPYNLDYFGVDSNPLLTGIIFDFMFEHSVYPSNYGVNLKNLRIFKSSFLPVILDI FT WEYEPSNKLADERLILPASAIDFALYIPKLNIYDSSVIVGERLKFLEVVFEGEKLDSIT FT QRVVALLKVSNPGIDEDILLDTLFVYYGIFCTARNRVVPRPPVMNTIRGELKSVDVSSV FT ESFFTELQLSTPDANVRRSFMGHHYRRVLSLYKDIGLKLPPKSDYVIPAEYGYLNVDFY FT KQIGSDVLNEQEMAHLTAVRDRVDYKCRNITSLASTPARASKFSNSRRFNRRDFVRSFQ FT H" FT CDS 1450..2142 FT /transl_table=1 FT /gene="CPm" FT /product="coat protein minor" FT /db_xref="GOA:D0R6H8" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D0R6H8" FT /protein_id="CAY54351.1" FT /translation="MALVPIKVNDSPANPADATAIITSSRQDPTSFGGVLARLNVASIS FT ETQTDRFSDKQLLEVVTKLSSFLKEKYHTLDKDLIIHITAIVKRAFTLSTSSKVVYSNT FT GCITYSLNDNTEYTLYDKDVFPFIAHTFGGVDTPNAIRKFCCSFELCHTALATLKPSLY FT EGKRFTRLGTPKGKAYLGADFLTGTLPSYSEHDRAITLRCSETALTKTPGDDFAIVSLR FT DLGRRSLV" FT CDS 2270..2866 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:D0R6H9" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D0R6H9" FT /protein_id="CAY54352.1" FT /translation="MGEFTVSDLKDMHAADGTTLSEDTSNKIIVPLIARVMEANPGFDG FT KGSKMLLGMILYRLALRTTSPNATFNEHDVTKYKIDGKDVKFNDDMVFTFIANHEAIPP FT GTKNPIRAWGRSLDQMYLKFVRPLKTILDFNQRCNKIGLPVGYEYLCADFLTGVGLDNH FT EAAILNLARAEALKKEVGDSGNSITSIKQLGRFST" FT CDS 2913..>3226 FT /transl_table=1 FT /gene="P20" FT /product="P20 protein" FT /db_xref="UniProtKB/TrEMBL:D0R6I0" FT /protein_id="CAY54353.1" FT /translation="MDVPSVSDIVVPRGPYLFRILYFYREHCYGIFFLSDRSDGDDLGV FT LKDMAVTDDKKYLLTDGSTFVSHPDALRNADYSVIRHITSNKRTHVADASQLAKMCRPE FT S" XX SQ Sequence 3226 BP; 804 A; 780 C; 719 G; 923 T; 0 other; ggttacgtcc gctcagatgt gggctgctcc tcagggtacc ttgttgaatg aactagcgta 60 cctgtactgt tctgacacga tttttgggtg gagtagacgc actggtgtcg atataaagac 120 gttacttcga ggtattgagt ctcgtaccac ggcacctcct gagatgatcc ccgccgacgc 180 cgctaaggaa ggttgcaggt tctcccttca tgacgtggaa agtttcctac ggtccggcaa 240 tttccacgtg gatgctttga ccattgaaca ctcctgggcg ctcagcaacg cttgcgggag 300 attagtgaat ccaaacgatg ttaaagaatt caaaggcatg gtttacgacc cgtcgctcga 360 caccacgaaa ctatcagttt tatcttcaga gatgggagat tacttgggcc actgcatgga 420 attatataag aggcacgtca tcactaaatc tgatgaggtc actgtgagga aagaggtttt 480 tctttggatc gaagctattc tcaatcctta caatctcgac tatttcgggg tcgactcgaa 540 tccgctcttg accggtatta tatttgattt tatgttcgag cactccgttt acccgtctaa 600 ttatggtgtt aatttgaaaa accttcgcat tttcaaaagc tcattccttc cggttatttt 660 ggacatctgg gagtatgaac cttctaataa actagccgat gagagattaa ttctcccggc 720 gagtgcaata gatttcgctc tctacatacc taaacttaac atatacgatt cctcggttat 780 cgttggtgag agattgaaat ttctggaggt agtttttgag ggggagaagt tagattctat 840 cactcaacgt gtagtagctc tcttgaaggt gagtaaccca ggtatcgacg aggacatcct 900 cttggacact ctctttgttt attacggcat tttctgcacc gctcgaaata gagtagttcc 960 tagaccgccc gtgatgaata ctattagagg ggagctgaag tctgtcgacg tgtcctcagt 1020 tgagtctttc ttcaccgagc tgcaactatc cactcctgac gccaatgttc gccgatcgtt 1080 catgggtcac cactacagac gcgttttgag tctgtataag gatatagggc tcaaactccc 1140 tcctaagagt gattacgtga ttcctgcgga gtacggttat ctaaacgtcg atttctataa 1200 acaaataggt tcggacgttt taaatgaaca agaaatggct catttaacag cggttcgaga 1260 tagagtggac tataaatgtc gtaacataac gtctttagct tccaccccag ctcgcgcttc 1320 taaattctct aattcacgtc ggttcaatcg gcgtgatttt gtcagaagtt ttcagcacta 1380 gcgctcggtt acgatacatt tgccttcact ctgtgggacg cgctttataa attttgccga 1440 tcttcagaca tggctctcgt tccaatcaag gttaacgatt caccggccaa ccccgctgat 1500 gcgaccgcta taatcacctc gtctaggcag gacccaacct ccttcggagg tgttcttgcg 1560 cgcctgaatg tcgcttccat ctcagaaact caaactgatc ggttcagcga taaacaattg 1620 ctcgaggtag tgactaaatt gtcctctttt cttaaagaga agtaccacac tttggacaaa 1680 gacctaatca tacatataac tgctatagtg aaaagagctt tcactctctc caccagttct 1740 aaagtcgtgt actccaacac tgggtgcatt acttactccc ttaacgacaa tacggaatac 1800 actttgtatg ataaagatgt ttttcctttc atagcccaca cattcggagg agtggacact 1860 cccaacgcca tacgaaaatt ttgttgctcc ttcgagctct gtcacacggc gttagcgacc 1920 ctcaaaccgt ctctttatga agggaagagg ttcactcgct taggaacccc gaaaggtaag 1980 gcatacttgg gagccgactt tctcaccggc actctaccga gttattctga acacgataga 2040 gcaataacac tccggtgctc ggagacggct ctcacgaaaa ctcccggaga tgatttcgcc 2100 atcgtgagtc tccgcgactt gggtcgcaga tcattagttt aacgatttgt gtctttttcg 2160 tccgtcgctc tgctgttgac tttccattga ctttgttgtg agactatcga aacttacaat 2220 ttctaagctc acgtagtctt cgcactttca gtttaactat taataagata tgggtgagtt 2280 caccgtgtcc gatctgaaag atatgcacgc cgctgatggc accactctct cagaagatac 2340 ctcgaataag ataatcgtcc cgctcatcgc tagggtcatg gaagccaatc ccggtttcga 2400 cgggaaaggt tcaaagatgc tgctagggat gattctctac aggctggctt tacgcaccac 2460 ctctcctaac gcgaccttca atgagcatga tgttaccaag tacaagattg atggcaagga 2520 tgtcaagttc aatgacgata tggtgttcac ctttatcgcc aatcacgagg ccatcccccc 2580 gggcactaag aaccctatca gagcgtgggg tcgttcgctt gatcagatgt atttgaaatt 2640 cgtgcggccg ttgaaaacta ttttggattt caaccagcgt tgcaacaaaa ttggtctgcc 2700 cgtaggttac gagtatttgt gcgccgattt cctcaccgga gtcggtttag ataaccacga 2760 agcagccata ctgaacctag ccagggctga ggctctcaag aaggaagtcg gtgatagtgg 2820 taattcgatc acctctataa agcagttagg tcgcttctcc acttagagat tgtcactcgg 2880 cgctccgctt gagtgttcta tattttaaag ttatggatgt tccttctgtc tccgacatag 2940 tcgtaccacg aggtccttac ttgtttcgca ttctttattt ttatcgcgaa cattgctacg 3000 gtatattctt tttatccgat cgcagtgatg gtgatgatct cggtgtactc aaagacatgg 3060 ccgtgactga tgataagaaa tacctgctca ccgatggcag taccttcgtc tctcaccccg 3120 atgcgttgcg aaacgctgat tactcggtca taagacacat cacttcgaat aagagaacgc 3180 acgtagccga cgcctcccag ctcgcaaaga tgtgtcgtcc cgagtc 3226 //