ID FN391551; SV 1; linear; genomic RNA; STD; VRL; 2892 BP. XX AC FN391551; XX DT 02-NOV-2009 (Rel. 102, Created) DT 17-JUL-2010 (Rel. 105, Last updated, Version 2) XX DE Raspberry leaf mottle virus CPh gene (partial), CPm gene and CP gene DE (partial), genomic RNA, SCRI stock isolate XX KW . XX OS Raspberry leaf mottle virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RP 1-2892 RA MacFarlane S.A.; RT ; RL Submitted (01-MAY-2009) to the INSDC. RL MacFarlane S.A., Plant Pathology, SCRI, INvergowrie, Dundee, DD2 5DA, RL UNITED KINGDOM. XX RN [2] RX DOI; 10.1111/j.1744-7348.2010.00401.x. RX AGRICOLA; IND44358422. RA McGavin W.J., MacFarlane S.A.; RT "Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf RT spot virus and the closterovirus Raspberry mottle virus"; RL Ann. Appl. Biol. 156(3):439-448(2010). XX DR MD5; a80d65d49d6e3070cc78c8627f18bc2d. XX FH Key Location/Qualifiers FH FT source 1..2892 FT /organism="Raspberry leaf mottle virus" FT /isolate="SCRI stock isolate" FT /mol_type="genomic RNA" FT /country="United Kingdom:Scotland" FT /isolation_source="leaf" FT /identified_by="S. MacFarlane" FT /db_xref="taxon:326941" FT CDS <1..1490 FT /codon_start=3 FT /transl_table=1 FT /gene="CPh" FT /product="coat protein homologue" FT /db_xref="GOA:D0R6H4" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:D0R6H4" FT /protein_id="CAY54347.1" FT /translation="NFYGERTYSSYLSRTTNDFRSAKVRPKLPDHTRADGSKVTSEQMW FT AAPQGTMLNELAYLYCSDEIFGWSKRTGVDIKTLLRGIESRTAAPPEMIPADAAKEGCR FT FSLQDVESFLLSGNFHVDTLTVEHSWALSNACGRLVNPNDVKEFKGMVYDPTLNTAKLT FT ALSSEMGDYLGHCMELYKRYVITKSDEVTVRKEVFIWIETILAPYNLSYYGVDSNPLLT FT GIIFDFMFEHSVYPSNYGVNLKNLRIFKDSFLPVILDIWEYEPSEKLADERLIIPASAM FT DFALHIPKLNIYDMSVVIGERLKFLEVVFEGEKLESVTQRVIALLKVSNPDLDEDVLLD FT TLFVYYGIFCTARSRVVPRPSSINTVRGDLKLVDVSQIESFFSELQLSTPDVNVRRSFM FT GHHYRRVLKLYKEIGLKLPPKCDYIVPADYGYLNVDFYKQIGSDVLTEEEMGHLTAIRD FT RVDYKCRNIVSLNSTPAQGSKFSNSRRINRRNFTRKV" FT CDS 1567..2259 FT /transl_table=1 FT /gene="CPm" FT /product="coat protein minor" FT /db_xref="GOA:D0R6H5" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D0R6H5" FT /protein_id="CAY54348.1" FT /translation="MALVPVKVNDSPANPADAAAIITSSRQDPTSFGGILARLNVASIS FT ETQTDRFSDKQLLEVITKLSSFLKETYHTLDKDLIIHITAIVKRAFTLSTSTKVKYSNT FT GCITYSLNDNTEYTLYDKDVFPFITNTFGGVDTPNAIRKFCCSFELCHTALANLKPSLY FT EGKRFTRLGTPKGKAYLGADFLTGTLPSYSEHDRAITLRCSETALTKTPGEDFAIVSLR FT DLGRRSLV" FT CDS 2389..>2892 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:D0R6H6" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D0R6H6" FT /protein_id="CAY54349.1" FT /translation="MAEFTIADLKEINVADNTTLSEEVEAKITKPLLAKIETANPGFDD FT KGAKLLVGMILYRLALRTTSPNATFNAHDVTTYKVDGKSVKFDDEMVFGYIANHEAIPP FT GIKNPLRAWGRALDQKYLKFIRPLKTTLDFNQRCNKIGLPVGYEYLCADFLTGAGLDNQ FT EAAIL" XX SQ Sequence 2892 BP; 752 A; 675 C; 651 G; 814 T; 0 other; gaaactttta cggggaacga acgtactcgt cctacctctc caggaccacc aatgatttcc 60 gatcagccaa agttaggcct aagttacccg accacacccg cgctgatggg tcgaaggtca 120 cctccgaaca gatgtgggcg gctcctcaag gtaccatgtt gaacgaatta gcctacttgt 180 actgttccga tgagatcttc ggatggagta agcgcactgg tgttgacata aagaccctgc 240 ttaggggtat cgagtctaga acggcggccc ctcctgagat gatcccagct gacgccgcta 300 aggaaggatg tagattctct cttcaggatg tagaaagctt tctgctatcc ggaaattttc 360 acgtagacac cctaactgta gaacactctt gggcacttag caacgcttgc ggaaggttgg 420 taaatcctaa cgatgttaaa gagttcaaag gtatggttta cgatcctaca ctcaataccg 480 cgaagcttac cgctctgtca tcagagatgg gtgattacct aggacactgt atggaattgt 540 acaagcgata cgtcatcact aagtcggacg aggttaccgt taggaaagag gtttttattt 600 ggattgagac cattctcgct ccttacaatc ttagctatta cggcgtcgac tcaaatcctc 660 tcctgactgg gatcattttc gatttcatgt tcgagcattc tgtttatccc tcgaattatg 720 gtgtcaattt gaagaatctc cgcatcttta aagattcgtt ccttccggtt atactcgaca 780 tttgggagta cgaaccttcg gagaaactcg ctgacgaaag gttgatcatc ccggcttccg 840 ccatggactt cgctctccac atacctaaac tcaacatata cgatatgtcg gtagttatag 900 gtgaaagatt gaaatttctt gaggtggttt ttgaagggga gaaactagaa tccgtcactc 960 aacgtgtgat cgctttattg aaagtttcta atcctgattt ggatgaagat gtgctcctgg 1020 atactctctt cgtctattac ggtatctttt gcactgctcg aagtagagtg gttccgagac 1080 catcctcgat caacactgtc agaggagact tgaaactggt ggacgtatca caaatcgaat 1140 ctttcttttc tgagttacag ctatctactc ccgatgtgaa cgttcgccgg tcgttcatgg 1200 gtcaccacta caggcgtgtc ttaaagctgt acaaagaaat agggcttaaa cttcctccta 1260 agtgtgatta catcgtccct gccgactatg ggtatttgaa tgttgatttt tacaagcaga 1320 taggttcgga cgttttaact gaagaggaaa tgggtcattt gacggcgatt cgggacagag 1380 tggactacaa gtgtcgtaat atagtctctt tgaattccac tcccgctcaa ggttctaaat 1440 tttctaattc gcgccgaatc aatcgccgca acttcaccag aaaggtttaa tttcgcttgg 1500 agctctagcg cttgtcttca ctcagtggga caattctcaa ttcgttcacc aacttgtatc 1560 gcgaccatgg ctctcgtacc cgttaaagtt aacgactcac cggcaaatcc ggccgatgcc 1620 gctgctataa tcacatcttc tagacaagat ccgacgtctt ttggaggtat tctcgcgcgt 1680 ttaaatgtcg cttctatctc tgaaacccaa actgatcgtt ttagcgacaa acagttgctc 1740 gaagtgataa ctaaactttc ttcgtttctc aaagaaactt atcacacttt ggacaaagat 1800 ttgatcatac acataactgc catagtgaaa agagctttca ctctctctac cagcaccaag 1860 gtgaagtatt ccaacacggg gtgcatcact tactccctta atgacaacac agagtacact 1920 ctgtatgaca aggacgtgtt tccatttatc actaatacat tcggcggggt ggatactcca 1980 aatgcgataa ggaagttttg ctgttctttc gaactttgtc acacggcgtt ggcgaatctc 2040 aaaccctctc tatacgaagg taagagattc actcgtttgg gaacccccaa aggtaaggcg 2100 tacttgggag cagactttct cactggtact ctaccgagct actccgaaca tgatagggcc 2160 ataacgctcc gatgttcgga aacggcgctt actaagactc ccggtgagga tttcgccatc 2220 gtgagtctcc gtgatctggg tcgtaggtcg ttagtatgaa cacttctctg gctgtcagtc 2280 gctctgctat tgactttcca ttgggttttc tttttagagg aacaccgaag ctattcgttt 2340 cgttcgtttc actatttaat aaaggtattc taaactaagt agggagacat ggcggaattc 2400 acgatcgcag acttgaaaga aattaatgtg gcagataaca ccactctttc ggaggaggtg 2460 gaggcaaaga ttaccaaacc gctcctcgct aaaatcgaga ccgccaatcc cggttttgat 2520 gacaaaggcg ccaagttgtt agtagggatg atactttaca ggttggcttt gcgtactact 2580 tcgcccaacg ccacttttaa cgcacatgac gtcaccacct acaaagtaga tggtaagagc 2640 gtgaaattcg atgatgaaat ggtgttcggt tacattgcta atcacgaggc tatcccaccc 2700 ggtatcaaga accctctcag ggcttggggt cgcgcgttag atcagaaata tctaaaattc 2760 attcggccgt tgaagaccac tttggacttc aatcagcgtt gcaataagat agggcttcct 2820 gtaggttatg agtacctgtg tgccgatttt cttaccgggg ctggtttaga caaccaagag 2880 gctgccatac tg 2892 //