ID FN386613; SV 1; linear; genomic RNA; STD; VRL; 3454 BP. XX AC FN386613; XX DT 02-SEP-2009 (Rel. 102, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 3) XX DE Beet soil-borne virus segment RNA-2, complete sequence, clone pUBS-2-wt, DE genomic RNA, XX KW . XX OS Beet soil-borne virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-3454 RA Crutzen F.; RT ; RL Submitted (28-APR-2009) to the INSDC. RL Crutzen F., Phytopathologie (FYMY), Universite catholique de Louvain (UCL), RL Louvain la Neuve, Place croix du Sud 2, bte 3, 1348, BELGIUM. XX RN [2] RX DOI; 10.1099/vir.0.014548-0. RX PUBMED; 19726609. RA Crutzen F., Mehrvar M., Gilmer D., Bragard C.; RT "A full-length infectious clone of beet soil-borne virus indicates the RT dispensability of the RNA-2 for virus survival in planta and symptom RT expression on Chenopodium quinoa leaves"; RL J. Gen. Virol. 90(Pt 12):3051-3056(2009). XX DR MD5; a697b76fbc7ff82029d2b390ad345f13. DR BioSample; SAMEA3283091. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF01080; UPD-PKib. XX CC nothing XX FH Key Location/Qualifiers FH FT source 1..3454 FT /organism="Beet soil-borne virus" FT /segment="RNA-2" FT /host="Beta vulgaris subsp. vulgaris" FT /mol_type="genomic RNA" FT /clone="pUBS-2-wt" FT /db_xref="taxon:46436" FT 5'UTR 1..382 FT CDS 383..3178 FT /transl_except=(pos:875..877,aa:OTHER) FT /gene="cp-rt" FT /product="104K protein" FT /note="ribosomal readthrough" FT /db_xref="GOA:C7U0R6" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:C7U0R6" FT /protein_id="CAY39851.1" FT /translation="MVDPRYEGWNQREAIRAKKRRFVSYDTFMDLIVNWREVRVGIIEH FT SATILSQVSRLGEANFYGRNKRFGRVDTNGDVFYVDLSEARIRKILDNIIIALQTTSGE FT GRAKRLGKEASTTAGAEDSALNVAHQLAELAELMTSDQFIEDACFTREKFEHEVGLRWV FT EXQSTAPPVKVGVRAEIDCISNRMKAAARLGLLPGQERHGDAKQTINYDDLDFALNRVA FT GNLLPQTLALERRVESVPETFKDSEDRIDIRGGNPVGETVAKSLVDSHDVKVEKDIGVD FT GDGLAWVLAAIFAFLSMLFFSLMCFGSRRFLRLAIRREGKPGGGTMMFLSRIFTNIRYR FT LRDRAVRLVSRMRYSKRSRYNRSDMRRYLNDYKFSYIPWVADDFMSSDDKKVVADQNAF FT VEAVKLVDEGDTDLALDAVKRVKEIIQDYLSFTPDFFEIIEMKAAFVVSRKVSNINVPE FT ERDILNLRDNAFDPVSCGMPDIQQCSMEEVIKFDLQKVNCDATDDQTSLKSYVDLLRGL FT QYMFSLVGTAKFIAVYMAYSGKQYKCVAEAYASDLEMRKSSVDSATNDTVEKEKSSYVD FT EICLALAILFAMPAFISLIKSGGVVYRYFTHGGGPGARRRLRESLNELDNIELQNRLNR FT LREGVEDLGERSESSSTIEALERRLEMLREGDDTGNEGNVAVDEIRSDTAPGTNTLPNA FT SLNFGSAPVGGLAVIPCIGFPDSASEQRFARTQGKLLRSVRNDNDFKSRSIPEQQIETV FT FRRDAADTLSNGSSFSSVVLDSDETFSMEKLEVLNKNSYSEVPGEMFTIMKGGNVSHAT FT VKLGNEDVVVVNADTDSPTVIAANSLSKLHKDKGIEFGTFNKEKILQISSANIESSDKA FT VSSSKTNNTVRDFTKVLRVIGTAGSRNSSKPGAAKAASSSSSVEIATSTESMKTPMRQL FT I" FT CDS 383..877 FT /gene="cp" FT /product="19K coat protein" FT /db_xref="GOA:Q4LCH5" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q4LCH5" FT /protein_id="CAY39852.1" FT /translation="MVDPRYEGWNQREAIRAKKRRFVSYDTFMDLIVNWREVRVGIIEH FT SATILSQVSRLGEANFYGRNKRFGRVDTNGDVFYVDLSEARIRKILDNIIIALQTTSGE FT GRAKRLGKEASTTAGAEDSALNVAHQLAELAELMTSDQFIEDACFTREKFEHEVGLRWV FT E" FT 3'UTR 3179..3454 XX SQ Sequence 3454 BP; 967 A; 590 C; 868 G; 1029 T; 0 other; ggtaatttta cttcttcgcc gtttatttaa cacagaagaa gaaaaaattt ccaatttttt 60 gttacataga taaaacatac ggacaggtat cggtgttttt gaagtgtgac ttaaaatcgg 120 tttttatagt attattggtg tacaggcagg tccgagcact aatatttacc atataaactg 180 tattgcgttg acggaggcgt aagaaaaact atactttcgt ttgattcgct tgatttggcg 240 agtaaaatat aaatcatatc cggtaataat tgatccattt tccagtctac gtacctctat 300 tgaggaacgt gctattggag gtgtaactcg tagtgatcaa gcgccgagac gtgttgcaat 360 tcctattacg tcatctatta agatggttga tccgcggtat gaagggtgga accaacgtga 420 ggctataaga gccaagaagc gaaggtttgt atcttacgat acttttatgg atttaatcgt 480 taattggcga gaggtgcggg ttggtattat agagcactcc gctactatac tgtcgcaggt 540 tagtaggttg ggggaagcaa atttttacgg acgtaataag cgctttggaa gagttgacac 600 taacggcgac gttttttatg tcgatttaag tgaggccagg ataagaaaaa ttttagataa 660 cataattatt gctttacaga ctacttccgg tgaaggacgc gctaaacgat taggaaagga 720 ggcgagcacg acagcaggcg cagaagatag cgctctgaat gtggcacatc aactcgccga 780 gctagccgag cttatgacct ccgatcagtt tattgaagac gcatgcttta cgagagaaaa 840 gtttgagcat gaagttggtt tgcgctgggt tgaatagcaa tcaactgctc cgccggttaa 900 agtgggcgta cgtgctgaaa ttgattgtat tagcaatcga atgaaggcag cggcgcgttt 960 aggtctacta ccggggcagg agcgacacgg tgacgcgaaa caaactataa attatgatga 1020 tctggatttc gctttaaata gggttgctgg taatttatta ccgcagactc tggctttgga 1080 gcggcgcgtt gagtctgttc ctgaaacttt taaagattca gaggaccgaa ttgacataag 1140 aggcggtaat cccgtcggtg agacggttgc gaagtctctg gttgattctc atgacgttaa 1200 ggtcgaaaag gacataggag ttgacgggga tggtttagcc tgggttttgg cggctatttt 1260 cgcttttctt tctatgttgt ttttctcctt gatgtgtttt gggagtagga ggtttttgcg 1320 tctggcgatt cgacgtgagg gtaaacctgg gggaggtacg atgatgtttc tatcaagaat 1380 tttcacaaac attagatatc gtctgagaga tcgcgctgtg aggcttgtct cgcggatgcg 1440 gtactctaaa cgctcaaggt ataatcgtag cgatatgcga cgttatctta atgattataa 1500 attcagttac ataccttggg ttgccgatga ttttatgagt agtgacgata agaaggttgt 1560 ggcagatcag aatgcttttg tggaagctgt taagcttgtg gacgaaggtg atactgattt 1620 ggcattagat gcagtaaaac gtgttaagga gataattcaa gactatttga gttttactcc 1680 cgacttcttt gaaatcattg agatgaaagc ggcctttgta gtgtcgagga aagttagcaa 1740 tattaacgtt ccggaagagc gcgacatact taatcttcga gataatgctt ttgatcctgt 1800 ttcatgcggc atgcctgata tacaacaatg cagtatggag gaggtgataa agtttgatct 1860 acagaaggtt aattgtgacg ccactgatga tcaaacatcg ttaaaatcat atgtcgatct 1920 gctaagagga ttgcagtata tgttttcact tgtaggtact gcgaagttta tagccgtgta 1980 tatggcttat tctgggaaac aatacaagtg tgtggccgag gcttacgcta gcgatttaga 2040 aatgagaaaa tcgtccgtag actccgccac gaacgatact gttgagaaag aaaaatcttc 2100 ttatgtagat gagatatgtt tagcgttagc gattttattt gcgatgccgg cttttatttc 2160 tctgattaaa tcaggtggtg ttgtttatcg ctattttacc cacggaggag gcccgggggc 2220 gcgtagacgc ttgagggaat ctcttaacga gttggataat atagagttgc aaaaccgttt 2280 gaatcgtctt cgcgaaggcg tggaagattt gggagaacgt tcagagtcat cgtctaccat 2340 agaagctttg gaaagacgtt tggagatgtt gagggaagga gatgatactg ggaatgaagg 2400 caacgttgct gtggatgaaa ttcgcagcga caccgcccct ggtaccaaca ccctgccgaa 2460 cgcatcttta aatttcggtt cagctcctgt cggtggttta gctgtcatac cttgcattgg 2520 ttttccggac agtgcgtcag agcaacgttt tgctcggact caaggtaaac ttttgcggag 2580 tgtaaggaat gataacgatt ttaaaagtcg tagtattcca gaacagcaga tcgagacggt 2640 gtttcgacgg gatgctgcgg acacgttatc taacggctcc agtttttctt ccgtagtttt 2700 agactcggat gaaacattta gcatggaaaa actagaagtt ctaaataaga attcgtatag 2760 tgaagtgcct ggtgaaatgt tcaccattat gaagggtggg aatgtgtctc acgctacagt 2820 taagcttggg aacgaagacg tagttgtggt gaatgctgat acagattctc ctacagttat 2880 agctgcgaat tcgttatcca aacttcataa agataaaggc atcgagttcg gaacttttaa 2940 caaagagaag atattacaaa tttccagtgc taacattgag agttcggata aagcagtgtc 3000 ttcatcaaaa accaataaca cagtacgtga ctttactaaa gttttgaggg ttattggaac 3060 ggctggtagc agaaattctt ccaaacctgg ggcagcgaaa gctgcttctt cttcgtctag 3120 cgttgagata gctacgtcga cggaatctat gaaaaccccc atgagacaat tgatttaaat 3180 tgttcttggt tttcatgatt aattattatt attaatttta aataaaaaat gattatttgg 3240 cgtgatcaac caacgtgggt tatacgataa taaccggtgc ttttatgttc accgaaatcg 3300 aacatacgtt ttataggcct gcagtcgcta ttaagataat taacaaaaac ttaatatttg 3360 acttatgtag gtgagagtag tttctctcgg tcatcatcac acgatgatcc tgtggggtgc 3420 aaatcccccc cttaacttga gggaaatcaa gccc 3454 //