ID FN386612; SV 1; linear; genomic RNA; STD; VRL; 5835 BP. XX AC FN386612; XX DT 02-SEP-2009 (Rel. 102, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 3) XX DE Beet soil-borne virus segment RNA-1, complete sequence, clone pUBS-1-wt, DE genomic RNA, XX KW . XX OS Beet soil-borne virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-5835 RA Crutzen F.; RT ; RL Submitted (28-APR-2009) to the INSDC. RL Crutzen F., Phytopathologie (FYMY), Universite catholique de Louvain (UCL), RL Louvain la Neuve, Place croix du Sud 2, bte 3, 1348, BELGIUM. XX RN [2] RX DOI; 10.1099/vir.0.014548-0. RX PUBMED; 19726609. RA Crutzen F., Mehrvar M., Gilmer D., Bragard C.; RT "A full-length infectious clone of beet soil-borne virus indicates the RT dispensability of the RNA-2 for virus survival in planta and symptom RT expression on Chenopodium quinoa leaves"; RL J. Gen. Virol. 90(Pt 12):3051-3056(2009). XX DR MD5; 2add7d4f9ce75143ad8a76d132652dd3. DR BioSample; SAMEA3283091. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..5835 FT /organism="Beet soil-borne virus" FT /segment="RNA-1" FT /host="Beta vulgaris subsp. vulgaris" FT /mol_type="genomic RNA" FT /clone="pUBS-1-wt" FT /db_xref="taxon:46436" FT 5'UTR 1..129 FT CDS 130..5466 FT /transl_except=(pos:3940..3942,aa:OTHER) FT /product="putative 204K replicase protein" FT /function="putative virus replication" FT /note="ORF2" FT /note="ribosomal readthrough" FT /db_xref="GOA:C7U0R4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C7U0R4" FT /protein_id="CAY39849.1" FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN FT ALKANTKKKIIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFISDSSE FT IPPDVREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGETA FT KDDVMIYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ FT RAKQKTVIQKLRIHVKNTVTIGDLLKHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ FT VNTAVLQRFTESDDDHFSTCALNAPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN FT TEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL FT TPTPREEVKNSEEGVDVTGEDVSTDIIEPHCDGRWALMAEDSDFAIDQKRSEALNIMEV FT RYAKLPSKPDYLESDDFRTRAKKEFIWYLECKLVADKSAMTDIVRDFVYNMYHNSLCEF FT PKNSCFLSYEGDDNGNWVWGRKPVRLGHAYAVHFYAADWKTDCRLVSLSWNKDEEGNFV FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTDEQLKRVRTVDSFLMNDKDSRAKV FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK FT RLTYRSPLDVACFLTRKNFYGTSTVMSANPTGRSMSVVGPRDGMTSNYSIPKKKGAQYL FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQXRCGSKYESITVSD FT RPVSVPDVGAVEDLQVMYDIAFPGNSVIETYFDGYDVATGGLEIDIANIKYYPNKQKRM FT WQEVRGLTPALRTAMPEKRQSGLIESVLALNKRNMAAPKLQESVNEFEIIENVISKAKA FT VFFDEKFIDVSPMNSVSNCQKWWDKQSVTAQKQMLADTRIISEIDLCTYNFMIKNDVKP FT KLDLSPQSEYSALQTVVYPDKIVNAIFGPVMKEINERILLALRPHVVYNTRMTAEELDR FT SVEFLDVREQYDAVEIDFSKFDKSKTSLHIRAVIELYKIFGLDDMLAFLWEKSQCQTTI FT RDRQNGLIAHILYQQKSGNCDTYGSNTWSAALALLDALPLERARFMVFGGDDSLVFFPK FT NMNLADPCGRLASLWNFDCKFFNFQNNMFCGKFLLKIGENYKFAPDPFKLLTKLGRKDI FT KNDILLSEIFISISDNYRSYHDYRVLEALNVAVVERYKLSQDVLFGLCALKKYLFNFDL FT FRTLFSYKGKLHCTNVSRNFEW" FT CDS 130..3942 FT /product="putative 145K replicase protein" FT /function="putative virus replication" FT /note="ORF1" FT /db_xref="GOA:C7U0R5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C7U0R5" FT /protein_id="CAY39850.1" FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN FT ALKANTKKKIIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFISDSSE FT IPPDVREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGETA FT KDDVMIYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ FT RAKQKTVIQKLRIHVKNTVTIGDLLKHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ FT VNTAVLQRFTESDDDHFSTCALNAPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN FT TEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL FT TPTPREEVKNSEEGVDVTGEDVSTDIIEPHCDGRWALMAEDSDFAIDQKRSEALNIMEV FT RYAKLPSKPDYLESDDFRTRAKKEFIWYLECKLVADKSAMTDIVRDFVYNMYHNSLCEF FT PKNSCFLSYEGDDNGNWVWGRKPVRLGHAYAVHFYAADWKTDCRLVSLSWNKDEEGNFV FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTDEQLKRVRTVDSFLMNDKDSRAKV FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK FT RLTYRSPLDVACFLTRKNFYGTSTVMSANPTGRSMSVVGPRDGMTSNYSIPKKKGAQYL FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQ" FT 3'UTR 5467..5835 XX SQ Sequence 5835 BP; 1724 A; 934 C; 1361 G; 1816 T; 0 other; gtattatttt ctcaacggtt atttaccaaa gagaaagttt ttataccatt aattttgaga 60 agtctgcttt ttagcaataa atcttttcaa attattggtt tgtcttttta tttttacgaa 120 tattctacga tggaatctac aaacattctg acgcaaatta atcgtgatga tataattcag 180 gccgtattaa ctacaagtgc gagtaggact cagtctgctt tacatgaaac tttgtgtagg 240 gtgattgatg ataatattaa gaatgctctt aaagctaaca caaaaaagaa aataattgac 300 gtgaaacgaa acttgtctga agaacaggtt cagtatttat gtgagcttta tcctgaaaga 360 aaaataatta catccaattc tgaacgtggt actcatagta tggctgcggc tatgcgaaaa 420 attgaaacgg atttagtttt gtcactgttt cctaagaata gcgttatata tgatattggt 480 ggtaattggg cgacgcacgc taagtgtaat gatggaagga aagtgcattg ttgctgtcca 540 atattggact atcgtgatgc gcagaggaag atgacgcgga tgttaaactt tcataaattt 600 atcagcgatt cttctgagat acctcctgat gtcagagaaa aagcggagat gatagccgaa 660 gataacgcca ttataactgc aaatgtgcgg gaaggtgatc tgaattcttc cgctttgaac 720 ggacgttggt tttgccaaaa caagtttgaa gactgtgttt ttgatccgcg tgatattttg 780 atgggtgaga ctgctaagga tgatgtaatg atttatgcca tggcgattca tagtatttat 840 gatataaatg tttatgaatt ggctacggcg ttacagcgaa aaggaataaa gcggatggta 900 ggtacttttc tgttttctgt ggacatgttg ctcggaagaa aaagtggtga attgccatct 960 gttaacgggt tttataagtt agaaggtgaa tatataaagt acgggtttta cgacgatccg 1020 aattgcggtt acagacataa gttttcttcg cttaaggctt acttaacaaa aacttttgtt 1080 aaagcagcaa atggttccgt gttttacctg gagttgactg atttaagggg cgacgtaatg 1140 tactttacta tgacagatgc tacagaggcg cgggcttccg gtatcatgaa agatgagtcg 1200 ttcaaatgta ttccagtgga cgcaaaaaac aaggtagttt ttcctttgtt tgttgtagat 1260 gaaaccactg acacactcat gtttcttgaa cgtgtattgc caaaagattt cgtgcatcgc 1320 gctattgagt atgttaatcg ttgcaaggag aatcagttaa cggttgaaag tattgttagt 1380 tatttgtcgt ctactaataa tgccgtgata attggtgggt ctgcgagaaa agtggaagag 1440 aaggtggatc cttctttgct gccgatgatc gcctccactt tgttagttta cagtgaaatg 1500 cagagagcta aacagaagac tgttattcaa aagctgagaa ttcatgtgaa gaatacagtt 1560 actattggtg atttgttgaa acacgctttc cataaggtgt tcggcgccgt tggtgtcggt 1620 cagttggcac tgcagagctt tgctagatgg ttaaagtttt ttcatggctc aggggttatt 1680 gagatgaatg acctttttat gtacgtggag attgaagacc gtattaggtt atggtctaaa 1740 aaatctcgag agcacgaatt ctttctaacc tttgatgatc taacagaaaa aagtcgtcta 1800 tacgaagagt ataatgaaga aagacgtagg atttctgaca agatcattaa ggaaaaaggt 1860 ttgagttcta aagacctttc tttggaagaa gataaggaaa agacggtaga tgaaattctg 1920 gcctggatgg agaaatctga agatttgaag gcttcggaat tgcgttctaa gttaataggg 1980 attcgaaaga atcgtgcacg tgttgataaa cgaaagtttg gtgaggcgca tcaggtaaat 2040 acggctgtat tgcagaggtt taccgagtcg gatgacgatc acttttccac gtgtgcttta 2100 aatgctccag gcaagtggtg ggttgatgtc ctgggtgaat ttttaggaaa gacattatca 2160 gaggtttgtg ctactaatat tgttttttct gatatagaac ccaatgataa cactgaaggt 2220 tttgatactg ttgaatatgc cgatagagac gatatggcta gcgatgtcga aacgtcgatt 2280 agtcagtgcg tcgagtccaa cgatgagtgt gtagacgaag atggttacag ttgcgacggt 2340 gattccaaag ttgagcattc tactttaaat agtaattatg gtgcgttgac gccaactcct 2400 agagaagagg taaaaaattc agaggagggc gttgatgtga caggtgaaga cgtatctacg 2460 gatataattg agccgcattg tgatggaaga tgggcactga tggcggaaga ttctgatttc 2520 gccattgacc agaagcgatc cgaggcgcta aatatcatgg aagttagata tgctaaatta 2580 ccatctaaac cagattactt agaaagtgat gattttagaa cgcgggcaaa gaaagagttt 2640 atctggtact tagaatgtaa gttagttgca gataagtctg cgatgactga tattgtgcga 2700 gattttgtct ataacatgta ccataacagt ctttgcgagt ttccaaaaaa ctcttgcttt 2760 ctaagttacg aaggtgatga caacggtaat tgggtctggg gccggaaacc ggttaggttg 2820 ggccacgctt acgctgttca cttttacgcc gctgattgga agactgactg tcgacttgtg 2880 agtttgtcat ggaacaaaga cgaggaagga aatttcgttg gcgataagcc cgttatttct 2940 actaattccg gagtttatat gctatgcgat ttgacatttc taatgaatga aatgatcatt 3000 ttgaaaaatt tgcagttttc gttgaagacc aggtttcaga agcatattcc acacgttaca 3060 cttattgatg gtgtacctgg gtgtggtaaa tcaactcata ttgttaaaga agctagactg 3120 gaaaaccagt acgtactcac tatgggtcga gaagcagctg cagagttgcg agagcgattt 3180 aaaactgttc gcggttcgac cgatgaacag ttgaaaagag tgcggactgt tgattctttt 3240 ttgatgaacg ataaggactc tagggctaaa gttttgcatt tcgacgaggc attgatggcg 3300 catgctggta tggtttactt ttgtgcagat aatttgtctg ctcggacaat tatttgtcaa 3360 ggtgattctc agcagatacc atttattaac cgcgttgaat ccataacttt ggaatacgct 3420 aagttggaaa taaccaacgt ggtggaaaaa agacttacct atcgttcccc tttggacgtt 3480 gcctgttttc tgacaaggaa aaatttttat ggcacttcca ctgttatgag cgcaaatcca 3540 acgggacgtt ctatgagcgt tgttggtccc cgagatggca tgacgtctaa ctacagcatt 3600 cctaagaaga aaggagctca gtacctcact tttactcaaa gtgagaagga agacatggtc 3660 cgttacctag gtaagggaca atggtctgtg aacaccgtac atgaaagtca aggaaaaact 3720 tacgatgatg ttatattagt taggttgaag cccactgata atgaaattta tcctggtggg 3780 cggaaatcaa aaccttacgt cgtagttggt actacgcggc atagacgcag tttagtgtac 3840 tatacacgtg ctgaggacat tctgtataga gatataactg aaatgatgag tgtgcaagaa 3900 ggaaaattgc acaaacattt gttcacggaa agtactcaat aacggtgtgg gtcgaagtac 3960 gagtcgataa ccgtttccga tcgtccggta agtgttcccg acgttggagc tgttgaagat 4020 ttgcaggtta tgtatgacat tgcttttcct ggcaattcgg ttattgagac gtatttcgac 4080 gggtacgatg ttgcgacggg aggtttagaa atagatattg ctaatataaa atattatccc 4140 aacaagcaaa agcgaatgtg gcaagaagtt cgcggactta cacctgcttt acgaactgct 4200 atgcccgaaa aaaggcaaag cggtttgata gagagcgttc tggcactcaa taagagaaat 4260 atggctgctc ctaagttaca agaatcggtt aatgaattcg agattattga aaatgtcatt 4320 tctaaggcca aggctgtttt cttcgatgag aaatttatcg atgtatctcc gatgaactcc 4380 gtatcaaatt gtcaaaaatg gtgggataaa cagtcggtga ccgcgcagaa acagatgttg 4440 gcggatacta gaatcatatc cgaaattgac ttgtgcacat acaacttcat gataaaaaat 4500 gatgttaagc ctaagttgga tttgtcgcca cagtcagagt attctgcatt acaaacagtt 4560 gtctatccgg ataaaattgt taatgccatt ttcggtcctg tgatgaagga gataaacgaa 4620 agaatattgt tagcgttgcg gcctcatgtt gtgtataaca caaggatgac agcagaagaa 4680 ctagatagat ccgttgaatt tctcgacgtt cgcgaacaat acgatgctgt tgagattgat 4740 ttttctaaat ttgataaatc aaaaacttct ttacacatca gggcggtgat agaattatac 4800 aagatctttg gtcttgacga tatgttagcc tttttatggg agaagtcaca atgtcagact 4860 acaattcgtg atcgtcagaa tggactgatt gcgcatatac tttatcaaca aaaatctggt 4920 aactgtgata catatggttc taatacttgg tcggctgctc ttgctctttt ggatgcgtta 4980 ccacttgagc gggctaggtt catggtattt ggcggtgatg attctcttgt gttttttcca 5040 aaaaatatga atttagctga cccttgtggt aggttggctt ctctttggaa tttcgattgt 5100 aaatttttca actttcaaaa caacatgttt tgcggtaagt ttcttttaaa aattggagaa 5160 aattataagt ttgcgccgga tccttttaaa ttacttacaa aacttggtag gaaggatatt 5220 aaaaacgata ttttgcttag tgaaattttt atttctataa gcgataatta ccgttcttat 5280 catgactaca gagttttaga agctttaaac gtggcggttg tcgaacgtta taaattatct 5340 caagacgtct tgtttggttt gtgtgcttta aaaaaatact tgtttaactt tgatttattc 5400 cgcacacttt tctcttataa aggcaaatta cactgcacta acgtgagtag aaatttcgag 5460 tggtaaaatt cccttggttc tccgttttgt gagtttatga tcattatttt gtgtaatttg 5520 gtgtgaagag atacagtcta tttgtacttg taaatgatta tttgagctga tcactcaacg 5580 tggatttcac gatagaaatc ggtgtttttc attccaccta aatcgaaatg tactacggta 5640 gcgcgaacct tatcgcgcag tgttttgaag tccacttaaa tagaacttct ttccatggtc 5700 tgctttcgct actgaattaa ttataaaaac ttcagtattc gatttatgca gatgagagta 5760 gtatctctcg atcatcaaga cacgatgatt ctgtggggtg caaatccccc cctttacttg 5820 agggaaatca agccc 5835 //