ID FN377814; SV 1; circular; genomic DNA; STD; VRL; 7928 BP. XX AC FN377814; XX DT 08-MAY-2009 (Rel. 100, Created) DT 15-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Rice tungro bacilliform virus, complete genome, isolate Chinsura West DE Bengal XX KW complete genome. XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-7928 RA Roy S.; RT ; RL Submitted (22-APR-2009) to the INSDC. RL Roy S., Department of Plant Breeding, Faculty of Agriculture, BCKV State RL Agriculture University, Mohanpur, West Bengal, India-741252, INDIA. XX RN [2] RX DOI; 10.1007/s11262-011-0647-z. RX PUBMED; 21796436. RA Banerjee A., Roy S., Tarafdar J.; RT "Phylogenetic analysis of Rice tungro bacilliform virus ORFs revealed RT strong correlation between evolution and geographical distribution"; RL Virus Genes 0:0(2011). XX RN [3] RA Banerjee A., Roy S., Tarafdar J., Senapati B.K.; RT "Present status of rice tungro disease in West Bengal: occurence and RT characterization of the viruses"; RL Journal of Crop and Weed 5(1):232-235(2009). XX DR MD5; 67232882f5143c85080d6b4cdd21ebfc. XX FH Key Location/Qualifiers FH FT source 1..7928 FT /organism="Rice tungro bacilliform virus" FT /isolate="Chinsura West Bengal" FT /mol_type="genomic DNA" FT /country="India:Chinsura, West Bengal" FT /lat_lon="22.53 N 88.27 E" FT /collected_by="Amrita Banerjee; Somnath Roy and Jayanta FT Tarafdar" FT /collection_date="Apr-2008" FT /identified_by="Amrita Banerjee; Somnath Roy and Jayanta FT Tarafdar" FT /db_xref="taxon:10654" FT CDS 94..672 FT /transl_except=(pos:94..96,aa:Met) FT /product="P24 protein" FT /note="ORF I" FT /db_xref="UniProtKB/TrEMBL:C4QUK0" FT /protein_id="CAY56548.1" FT /translation="MESRLEKLGFLDLAIWGSPKTQKYSLSTENIAFYCYFHKPENTST FT TGHNHTFHSDNKQLNTIVDLIVKHAEKTKNIKEELDNYSKLLEKILELKPTKKQIEKLL FT ENQNTINQNFDYIKEQNSQIEKSLRKTNKLEDSINSLLIEITASKTKEVELLKYSYLKL FT QTNLKIIEKFEKEIQDLREILEYLKHQST" FT CDS 669..1004 FT /product="P12 protein" FT /note="ORF II" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q91DT4" FT /protein_id="CAY56549.1" FT /translation="MSADYPTFKEALEKFKDLESETANKDKFGWVFTLQGIKTTADVNL FT ASKGLVQLYALQEIDKKINNLSAQVGKIPTTSGSSSSAGAIVPAGSNTQGQYKAPPKKG FT IKRKYPG" FT CDS 1001..6025 FT /product="P194 protein" FT /note="ORF III" FT /db_xref="GOA:C4QUK2" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:C4QUK2" FT /protein_id="CAY56550.1" FT /translation="MSLRPFSGTSKTLTQDSASESNIKKGKSSTKRELIERIDVAKEIE FT NFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEEAISVTTNAFITSLFPNEVIKN FT VKNQGKLYYHIGMMAIGIKGLHRKKIGTKVMVMFYDDSFGKAKEASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSIAIKTIGRLTTNIQARYKMNVKD FT IVEQISSQGITMVAPMEIDSSHLDGNEWNLSKFMIQEGTSRVPSKALIYQNLHGGESLR FT FSNYTQTKMHDPTEINSDEDEDLKILGEQLNAKMATLQEETLEQKLERIKREKKQVLAK FT LEAKKNEIESNPYKMAVIEDDFNPNNEYLDDSYSELEDLEFEQLGLTGWEDLDQESLET FT EEITEWENPNQVLTREIKAFKSVSEQIEDIFGELLKEHGNYDMALKNLEERYDLKNLEG FT AKNLEEIAKASTSKMMDVKPVKRPKEEQTAYEDDMRDDWRRKELTTNPEVSSKDRNFVK FT IGGSYKKTFYPSKSEILNLDHVPPQFYYDQIITWEGIVKNEWEARKKDGMDMWSWMDGR FT ITGMVLYLIQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAL FT RELEALNCEDPVKIQPFMAEYLKKAAEAKKGFDVIYVERLLDRLPEAVGKLIATGFLDA FT GNSYEAGIGVAVSYISTWMRLKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKTLKRVT FT NYNRNKRKNYVRKPNIKRKCRCYICQDENHLANRCPRRYVNQARASMIEGLEEDIVSIA FT SDDEDYENFFEIIELEEFLSKSGQQDHEHTWETGGKKEKTCDICDYYTDFIKTIVCKTC FT EIQYCTTCANQLGIEVEKTYKKSREEELYDELRKTVVNLDLRLTIVEHKLEMNKLQEQF FT DSLQLSKEPSSSETIKALAMQAKESNFIKTNINRTAGCYVEVKLTFLNNSKITTALIDS FT GSTHNIICPNLVPEIWVKSIDLDIVMTTIDTSKYSLNRGLHDEVKIQFKEVDESFGIKY FT SLGQTYVAPKPTGTFIIGHRFMTSEHGSITIHKDYVTIQKTTGIYPTARHELKSEFARK FT HGGQRPLFSNIPETYNKIPKLYGYKSEIEDKNLLTLIKELEYLGYIGDDITKNKTNWVC FT DFKIINPDINITCNTIPYTPADKEVFEKQIKELLDNKLIRKASPTCRHRTAAFIVRNHS FT EEVAQKPRIVYNYKRLNDNMVTDPFNIPHKISMINLLQKARIFSKFDLKAGFHHMKLKE FT DFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDILIASSNE FT QEHIKHLKLFFTRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVEKIKKFD FT KSKLSTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKSGQRTFNKEDWNIIFKIER FT EVDKIKPLNRPEESDYIIIETDASEEEGGAVLICKPDKYASKDTEKIAGYASGNFGEKK FT TWTSLDYEIEAINEALNKFQIYLDRDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDN FT LLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNTASIIESSDSRSSTIESSDSQS FT SIKESLDSRTPTKESSDSPCRIKLHPLSSRQKVKGE" FT CDS <6049..7215 FT /product="P46 protein" FT /note="ORF IV" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:C4QUK3" FT /protein_id="CAY56551.1" FT /translation="INKECPYSIHHLGKNRVPIYKQGNLFHSEFTGRLSHLSNGLIDHL FT FTFSDNTERVRKLHLISEHLYNKEFEIQTYSLECEKLREQVSHLKNTVEIQKQQLREMK FT DKLEGLREPLKKPIYTTQDKEALRNFFCKERSMEYIFHHIKRLARESYYPHLNKLQKDM FT EFLRGFYLSFLTNVKFLVLFETGLWTTENIESHFFNNSSLFITQEEGERQMTKGLLEKN FT SEDEAGRYILTSGFVSDLYAHGFIKQINFTNKLPEGIPLVIREKIMQYKFPGANTILIE FT KEIPKWDFDLMKRSTTFRTQIYILQGHRNFYGFSPIKSYEPITPEEFGIEYYSWEQIYE FT DDEADVVYQSISTRISKLEREYAWPCDDSDIMSCTTSMEEEYAHRLEA" XX SQ Sequence 7928 BP; 3211 A; 1255 C; 1425 G; 2037 T; 0 other; tggtatcaga gcgatgttcg acttaaggga gttttgatac aacttataca tacatttaca 60 tatgttctaa agaggaatct tattttctca aatattgagt cacgtcttga aaaacttgga 120 tttctagatt tagcaatttg gggatcacca aaaacacaaa aatatagtct atctactgaa 180 aatatagcct tttattgcta ctttcataaa cctgaaaaca catccactac tggacataat 240 cacacctttc attctgataa taagcaactt aatactattg tagatctaat agtaaaacac 300 gcagaaaaaa ccaaaaatat taaggaagaa ctagataact atagtaagtt actagaaaag 360 atcttagaac ttaaacctac taagaagcaa atagaaaaac ttttggaaaa ccaaaatact 420 ataaaccaga actttgatta tatcaaagaa cagaactctc agattgaaaa atctttgaga 480 aaaaccaata aactagaaga ctctataaat tccttgctta tagaaattac agcaagcaag 540 accaaagaag tagaacttct aaaatatagt tatcttaaat tgcaaacaaa tctaaagatt 600 atagaaaaat ttgaaaaaga aatacaagat ctaagagaaa tcttagaata tctcaagcac 660 caatctacat gagtgctgat tatcctacct ttaaggaagc cttagaaaaa tttaaggatt 720 tagagtctga aacagcaaac aaagataagt ttggctgggt ttttactctt caagggataa 780 aaacaacagc agacgtaaat ctagcgtcta aaggactagt acaactttac gctttacaag 840 aaatcgataa gaaaataaat aatttatctg cacaagttgg taagatacct acaactagtg 900 gtagcagtag ttcagcagga gccatagtac ctgcaggaag taatacccaa ggtcagtata 960 aagcaccacc taagaaagga attaaaagga agtatccagg atgagtctta gaccgtttag 1020 cggtacctct aaaactctaa ctcaagattc agctagtgaa tctaatatta aaaaaggaaa 1080 atcttcaaca aaaagagaat taatagaaag aatagatgtt gctaaggaaa tagaaaactt 1140 tgattggaat aaattatctg gtataaaatc taataaactt tatgagaaaa attggcaaga 1200 aaaggccaaa ttaaaacaac aatcaataat ctcggcttat aaagaagaag ctattagtgt 1260 tacaactaat gctttcatca cttcattatt ccccaatgaa gttataaaaa atgttaagaa 1320 tcaaggaaaa ctttactatc atataggcat gatggccata ggaattaaag gattacatag 1380 aaagaaaata ggtactaaag taatggtaat gttttatgat gatagctttg gtaaagctaa 1440 agaagctagt ataggatcaa tagaaatgga tatgaatgca ggttgcggag tattttactc 1500 ttgccctgat tttgccaaat atataaaaga cctatcccat cttaagatag gaatacaaac 1560 cctaggatat gaaaattatg aggggaaaaa tctttccata gccataaaaa ctataggaag 1620 attaacaaca aatatccagg ctagatataa aatgaatgtc aaagatatag ttgaacaaat 1680 atcatcccaa ggaataacta tggtagcacc catggaaata gattcatcac atttagatgg 1740 gaatgaatgg aatttaagta aatttatgat tcaagaagga acaagtagag ttcctagtaa 1800 agccctaata tatcaaaatc tgcatggagg agaatcactt agattttcaa actatacaca 1860 aaccaaaatg catgatccaa cagaaataaa ttctgatgaa gatgaagatt taaaaatttt 1920 aggagaacaa ttaaatgcca aaatggcaac ccttcaagaa gaaaccttag aacaaaaatt 1980 agaacgaata aaaagggaaa agaaacaagt tctagcaaag ttagaagcta aaaagaatga 2040 aattgaatca aatccttaca aaatggcagt catagaagat gactttaacc caaacaacga 2100 atatctagat gattcatatt ctgaattaga agatctagaa ttcgaacaat taggattaac 2160 tggttgggaa gacctagacc aagaaagtct agaaacagaa gaaatcactg aatgggaaaa 2220 cccaaaccaa gtcctaacta gagaaattaa agccttcaaa tcagtctccg aacaaataga 2280 agatatattt ggagaattat taaaagaaca tggaaattat gacatggccc ttaaaaatct 2340 agaagaaaga tatgatttaa aaaatttaga aggagccaaa aacctagaag aaatagctaa 2400 agcatccaca tcaaaaatga tggatgtaaa accagtaaaa agaccaaaag aagaacaaac 2460 agcatacgaa gatgatatga gagatgattg gagaagaaaa gaattaacaa ccaatccaga 2520 agtgtcctca aaagatagaa actttgtaaa aataggagga tcatataaga aaactttcta 2580 ccccagtaaa agtgaaatcc taaacctaga tcatgtaccc ccacaattct actatgacca 2640 aatcataact tgggaaggaa tagtaaaaaa cgaatgggaa gcaagaaaaa aggatggtat 2700 ggacatgtgg tcttggatgg atggaagaat aacaggtatg gttttatatc taatacaaga 2760 ttggatatct aaaaaccaag ccgcttacaa tgatataaaa tctcgaggag ataggccaga 2820 aaatttcgta aaaatggtaa aagataggtt cttaatagaa gatcctacag atgaaagaag 2880 aacagcctta caaagattag ctctaagaga attagaagct ttaaattgtg aggatccagt 2940 taaaattcag ccatttatgg cagaatatct taagaaagct gccgaagcta aaaaaggatt 3000 tgatgtcata tatgtcgaaa gactattgga cagacttcct gaggcagtag gaaaactaat 3060 agccacagga tttctagatg caggaaattc atatgaagca ggcataggag tagctgtttc 3120 atatatttct acatggatga gattaaaatg cataaaagaa acagaagcta aaacacaaaa 3180 gaaagcatcc ttagcattct gtcgatccat atacactata ggagattata agaaaagaaa 3240 aacactaaaa cgtgttacga actataatag aaacaaaagg aagaattatg ttagaaaacc 3300 taacataaaa aggaagtgta gatgttatat ttgccaggat gaaaaccacc tagcaaacag 3360 atgtccaaga agatatgtca atcaagctag agctagcatg attgaaggat tagaagaaga 3420 tatagtttcc atagcttcag atgatgaaga ctatgagaac ttctttgaaa taatcgaact 3480 agaagagttt ttgagtaaat caggacaaca agatcacgag cacacctggg aaacaggagg 3540 taagaaagaa aaaacttgtg atatttgtga ttactatact gatttcatta aaaccatagt 3600 atgcaaaaca tgtgaaatac aatactgtac tacttgtgcc aatcaattag gtatagaagt 3660 agaaaaaaca tataagaaat ctagagaaga agaattatat gatgaattaa gaaaaacagt 3720 tgtcaaccta gatctaagat tgacaatagt tgaacataaa ctagaaatga ataaattaca 3780 agaacaattt gattctctgc aattatctaa agaacctagt tcttcagaaa ctataaaagc 3840 tttagctatg caagcaaaag aatcaaattt cataaaaact aatattaata gaacagcagg 3900 atgttatgta gaagttaaat taaccttctt aaacaactca aaaataacta ctgcattaat 3960 agattcaggt tcaacacata atattatctg cccaaatttg gtaccagaaa tatgggttaa 4020 aagcatcgat ctcgatattg ttatgaccac aatagacaca agcaaatata gcttaaatag 4080 aggattgcat gatgaagtaa aaatacagtt taaagaagtt gatgaaagtt ttggaataaa 4140 atatagtttg ggacaaacat atgttgcccc taaaccaact ggaactttca taattggaca 4200 tagatttatg actagtgaac atggtagtat tacaattcat aaagactatg ttacaatcca 4260 aaaaactacg ggaatttacc ccactgctcg tcatgaactc aaatcagagt ttgcgcgaaa 4320 gcatggtgga caaagacccc tattttcaaa cattccagaa acctacaaca aaattccaaa 4380 attatatgga tataagagtg aaatagaaga taaaaattta cttactctta taaaagagtt 4440 agaatatttg ggatatatag gagatgacat aacaaaaaat aaaactaatt gggtatgtga 4500 cttcaaaatc attaacccag atataaatat cacttgcaac acaatcccat ataccccagc 4560 agataaagaa gtttttgaaa aacaaatcaa agaactttta gataataagt taataaggaa 4620 agcaagtcct acttgtagac atagaactgc agcatttata gtaagaaacc attctgagga 4680 agtagcacag aagcctagaa tagtttataa ctataaaaga ttaaatgata atatggttac 4740 agatcctttc aatattccac ataagatttc tatgataaat ctattacaaa aagctaggat 4800 attctctaag tttgatttaa aagcaggatt tcatcatatg aaacttaaag aagattttaa 4860 agattggaca acctttactt gttctgaagg attatatact tggaatgtct gtccatttgg 4920 tatagctaac gctccatgtg catttcaaag atttatgcag gaatcctttg gagatttaaa 4980 gtttgcatta ttatacatag atgacatctt aattgcatca agtaatgaac aagagcatat 5040 taagcatctt aagttattct ttactagagt taaggaagta ggttgtgtcc ttagtaagaa 5100 aaaatcaaaa atgttcctaa aagaagtaga atacttagga gtggagataa aggaaggaaa 5160 gattagcctg caaccacaca tagtagaaaa gataaagaag ttcgataaaa gcaagttgag 5220 taccctaaag ggattacagg catatctagg cctacttaat tatgctagag gatacattaa 5280 agacctatcc aagttggtag gaccactata taaaaagact ggcaagagtg gccagcgaac 5340 ctttaataaa gaagattgga atataatctt taagatagaa agagaagttg ataagattaa 5400 acctttgaat agaccagaag aatctgacta cattataata gagacagatg catcagaaga 5460 ggagggggga gcagtcttaa tctgcaaacc tgataaatat gctagcaaag atactgaaaa 5520 gatagcaggt tatgcatcag gaaactttgg agaaaagaag acttggacta gtttagatta 5580 tgagatcgaa gctataaacg aagcattaaa taaatttcag atatatttag atagggactt 5640 tacaattaga acagactgtg aggcaatagt taaaggcata aaaacagaag attacaaaaa 5700 gagatccaag acaagatgga ttaaactaag agataatctt cttaaagatg gatataagcc 5760 tacctttgag catatcaaag gaaacaaaaa ctttttgcca aacttcctat cccgtgaggg 5820 agattttatt ttaaaatgtc ttcaaaacac ggcttcaatt atagaatctt cggattcacg 5880 atcttcaact atagaatctt cggattcaca gtcttcaatt aaagaatctt tggattcacg 5940 gactccaact aaagaatctt cggattcacc ttgcaggata aagcttcatc ctctgtcttc 6000 aaggcagaag gtgaaaggcg agtaatcgct aaagttcacg gtgtttccat caataaagag 6060 tgcccatact caatccatca cctcggtaaa aaccgagtcc ccatatataa acagggaaac 6120 ctgttccaca gtgagtttac tggtaggctt agccacttat caaatggtct tatagaccac 6180 ctttttacat tttcagataa tactgagcga gttaggaagc tccacctcat atcagagcat 6240 ctctataata aagagtttga aatacaaacc tatagtcttg agtgtgagaa attaagagaa 6300 caggttagcc acttaaaaaa cactgttgaa atacaaaaac aacagttaag agagatgaaa 6360 gataaactag agggactgag agaaccactt aaaaagccta tatacacaac ccaagataag 6420 gaagcacttc gtaacttctt ctgcaaagaa agaagtatgg agtatatttt tcatcacata 6480 aagaggttag ctcgcgagag ctattacccg caccttaata aactacagaa ggatatggaa 6540 ttcctcaggg gattctactt atctttctta acgaacgtca agtttctagt tctctttgaa 6600 actggactct ggacaactga aaatattgaa agtcacttct tcaacaacag tagtctcttc 6660 ataacccagg aagaaggaga aaggcagatg acaaaaggat tgctagaaaa gaacagtgaa 6720 gatgaagctg gaagatacat cctgacatca ggatttgtgt cggacctata cgctcatgga 6780 ttcataaaac agataaactt cactaataag cttccagaag gcattccatt agtcataaga 6840 gaaaagataa tgcagtataa attcccagga gcaaatacta tcttaattga gaaagaaatc 6900 ccaaaatggg actttgatct catgaagaga agcacaacat tcagaactca gatctacatt 6960 ctccaaggtc atagaaactt ttatggattt tcacccataa aatcctatga acccattaca 7020 cctgaagagt tcggaataga atattacagc tgggaacaaa tctatgaaga tgacgaagca 7080 gacgttgtct atcaatcaat aagcaccaga atctctaagt tggaaaggga gtatgcttgg 7140 ccatgtgatg acagcgacat catgtcctgc accacttcaa tggaagaaga atatgcccac 7200 aggctggagg cataaagaaa tgactcaaag ataaaggaac aaagcatcaa agcatcaata 7260 aaagaagact gaaggaggaa tccactttaa attattgtac ctctacaatt attgtaagag 7320 tgtgtaatgt ctagtctacc cctgaacact cctatataag gagaagtagt ctgcatgtaa 7380 taggcattcg agatccacac acccagagta gcacacactt ccacgagaac aagagaagag 7440 ctgatcttct cacctcctct tcaaagaagg attagctgca atggctcagg tcagtgagta 7500 gtcgtcttta aggttcctct aggaacctct gtgtaatatg tattgtatca tgtttgtatc 7560 atcaaaaact tatccgctgc atgaataaag ctctatattg ttgtttacac tccttcgata 7620 agatatgaag ccatactcgt ttcttaaatc aatagttcta agttaattct agcatgaaaa 7680 agggggctaa agggggaaga agtaccgcca gggcgtgtga tgccaaggga acaagtacca 7740 tgaataccct aataagtgct agaaggaaga taagaactaa cgaaataagg aacatttggt 7800 agctggtttc ttattatcat tatcaagtag ctcttcctca tcacgaaaac tgcaaaggcc 7860 tgccaacctt aggctgaaac agtgactagg ccgaggaatt gcgaaaagat agggggggtg 7920 cctacatc 7928 //