ID FN377573; SV 1; linear; genomic RNA; STD; VRL; 6620 BP. XX AC FN377573; XX DT 30-JUN-2009 (Rel. 101, Created) DT 30-JUN-2009 (Rel. 101, Last updated, Version 1) XX DE Fig latent virus 1 ORF1, ORF2, ORF3 and ORF4, isolate f5p5, genomic RNA XX KW . XX OS Fig latent virus 1 OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus; OC unclassified Trichovirus. XX RN [1] RP 1-6620 RA Minafra A.; RT ; RL Submitted (22-APR-2009) to the INSDC. RL Minafra A., CNR Istituto di Virologia Vegetale, Via Amendola, 165/A, 70126 RL Bari, ITALY. XX RN [2] RA Gattoni G., Minafra A., Castellano M.A., De Stradis A., Boscia D., RA El Beaino T., Digiaro M., Martelli G.P.; RT "Some properties of Fig latent virus 1, a new member of the family RT Flexiviridae"; RL Unpublished. XX DR MD5; 0679c8b266b5904dc99203b17c3ba0df. XX FH Key Location/Qualifiers FH FT source 1..6620 FT /organism="Fig latent virus 1" FT /host="Ficus carica" FT /isolate="f5p5" FT /mol_type="genomic RNA" FT /country="Italy" FT /collected_by="G. Gattoni" FT /collection_date="15-Apr-2008" FT /db_xref="taxon:641245" FT CDS <1..4261 FT /codon_start=2 FT /product="replicase" FT /note="ORF1" FT /db_xref="GOA:C6GZ77" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:C6GZ77" FT /protein_id="CAY32622.1" FT /translation="ATCAYHFNRNVPMIRKLLGVALKSRLGIRLYRARSIVRAVCWNFA FT LARGRQDHMLDQASDSLVVSILTSHKDVSDYFFFRDIPRRVWVVRDLCARIQKGMDGWA FT SIPLKKTIQDWLCDHSLGLCERLNLVDDFERKLMRLKDIELDLDLEPFIRKPESVLESF FT DSLWGLDAPSSTLDRPAEPYTGYFISLRYRVDLRGFLERVERYMHRRSNPTFAGHLGPI FT LPICYPMPDKVMAEAVTVSSTEPTEPELDTSQPPRDRIPYPSLMRRLHRPAFILQPDYP FT PHRSGSWRVAPSSKRCFSYGHAPSITESRVADALEEIFMRPMAQSMLYQVYDQDASIGF FT HADDEECYDLSDNPVLTINTKGFAKFMCRDDRGEVSFDLVPGSCLLMPNDYQTRGKHSV FT RSCSAGRTSTTFRIQRRDVPKGKVSKGLTNDQPAPKEQLTQQDFENLSLDDQVSLCMPY FT SCFFKCLASEKDDVSAILLQCSEYLWSVYQNRGTSVATALRICKDMGYSVQILEGLKIT FT KSDSEGLLKIKLENGHYELVKDFSAFDSLTQNKKKKRESSGAKLDLGSLKVSDGFYSQI FT SFKALKVAAEKLVVSLLDGTSGIISQGVRGEGFRIVPGAKSEQTALDIIRRAEDTTKDI FT VTILGFAGSGKSHGLQQRINAEGKPQGILLLSPRRQLMEDWVKKCPKLSCKTFEAGLKD FT DLRAYGCVVLDELSLFPNGYLDLLIIKANLLGHQKLQIVVVGDPIQARYYSKDDQHRLY FT KEHEIDRLGEVNYGLWTHRLPSRLADKLSVETTSECPGTEVVVHNSLPEARAAARKKNQ FT EIEVILCASREEKKSFEDNTLTFGESQGLTFDFGLISLSEEARLSSDQQILVAVTRFRK FT GFGFIYNAKGDYKIFARNCKGLLLRILGKPKVSIDYLMNMTKSKLKINKLGGVGAGLDE FT RDRELRLAGDPWLKGQIFLGQRVNMVSETEALVEEQLSTHKIHLPISTEKLITLNMGFS FT KSKYCREIKTRSGASNQILEEDRGRGSTDLPQPCLVESRYLNHSSKDDVTFWAAVVKRL FT RFAKPEKNYRKYLLAKHRGDAMLRAFLELVPLKPIQSNLLLSEAEADFEEKKLQKSAAM FT DSLPFNRSDPDAAADLVKVLFEKPAFAQIWKRFVLAKAGQTIACFHHRILLRFAPMCRY FT IEKVFSLQCPSNIYVHQKKNFDVLEAFVRDHFSGDLCVESDYEAFDTSQDASTLAFEVA FT LMEHLKIPSHYIDDYIVMKTTLGCKMGSLAIMRFTGEFCTFLFNTFANISFTSMRYVIP FT RGTPLLFAGDDMCALRNLKLRSEYNDTLDKLTLRAKVCRTSKPLFCGWRLTKWGLYKEP FT ILVLERLLISIERGTLTDTINSYFLEFKYAYDKGGNLEDIMDEGQLDAHHRCVRIFLRH FT QNLLHDLNYSTLHEGLD" FT CDS 4155..5297 FT /product="movement protein" FT /note="ORF2" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:C6GZ78" FT /protein_id="CAY32623.1" FT /translation="MKVSLMHITGALEYFFDIKTCCMTSTTVPSMRGWIDAPLGSSSRV FT NKMSIYKKSSKLGGDWLVLRSEINAALDLELKDGLLYSTIPFAPRSLLTDNCKYGYIHW FT GQILVEVVALHQAKDHDCLLVLHDDRWEDPPDRLIKCQRFKLKQGPNSFSFRPDFLVSL FT LDTNAMESLRLSIFVLGLRMKPGSKPIAVKTTGIYKAITNLTEDLSYRQSNIEIRDSDE FT DAVNLLEHFPLHSFEIEESTFRRWGLTGPKRVHNANIKRVVQKGRGIRFREADLKSGST FT FDDNSSYSLGIESQPSSPHNVNGARSPEESSEERNIREIDERRRLQGSKRRGQVKSLEK FT HIWEYSHTWILRGDRVPTPRVGGGGSQRSEDRVLHSLRYH" FT CDS 5056..6291 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:C6GZ79" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:C6GZ79" FT /protein_id="CAY32624.1" FT /translation="MSTVHEVLRSQVKKEILERLMKEDAFKGVKEEDRSRVWRNIFGNI FT AILGSSEETEFPPLELEVEDLKGQKIASYTLSDIIELIRDYRDTHKSQSIKMMTLRNIC FT EAFAHEARLFLMEAKKIGLVTNLCAKMTKTCGRAPQVAFDFSTGLAHNTLSNSEKSVIQ FT NLNARLYATQADQSKNEAIIDKGPAAGPDHLNVNLKITDLSDLVVFKLVFVLLNKTVDG FT VKGVFNNFCSNFSSVSAPTQTPPKEIEADSKLEKLIEHSLERAAKLDLGSLSKIKPFPL FT PRDCEDILGDCGLARGRSGLIQYYKGKSFVEAPRGYSTRLIFPALVNYRMSNSSELLGV FT LLALNRYEGDGRIEKVTDIELSAVINRYLDPYRSKSVTVRDFDILANAAPGWVDKESIV FT GNPTYAWFPRAR" FT CDS 6215..6559 FT /product="nucleic acid binding protein" FT /note="ORF4" FT /db_xref="GOA:C6GZ80" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:C6GZ80" FT /protein_id="CAY32625.1" FT /translation="MPLPGGLTKRVLLGILHTLGFLGQDNLRNIFSRLEVGVYEGKSSY FT ARKRRAKLLGVCHKCFKVNNCCVRCSETAKLKREWKKDWVLNGLRKGTDAIPEPRLIHL FT LEGLGINTNN" FT 3'UTR 6560..6620 XX SQ Sequence 6620 BP; 1867 A; 1496 C; 1664 G; 1593 T; 0 other; tgcgacttgc gcgtaccatt tcaacagaaa cgtacccatg atacgcaagc tattaggtgt 60 cgcgttgaaa tccaggcttg gcatcaggct gtaccgagct cgatccatag tacgcgcagt 120 gtgctggaat ttcgccttgg cacgcggtcg acaagaccat atgctagacc aggcctctga 180 ttctttagta gtatctatac ttacttcaca taaagatgtt tctgattatt ttttttttag 240 agatatccct agacgcgtct gggtagttag ggatttgtgc gcccggattc agaagggcat 300 ggatggttgg gcgagcatcc ctttgaaaaa gacaatacaa gattggctat gtgaccactc 360 gctcgggctt tgtgagcgcc tcaacctggt ggatgatttt gagcggaaac tcatgcggct 420 taaagatatc gagctggacc tggatctaga accatttatc cgaaagcccg aatctgtgct 480 tgaatctttc gattctctct ggggcctgga tgctccttct tcaaccttgg accgacccgc 540 tgagccatac accggttact ttataagtct aagatacagg gtagatttga gagggttctt 600 ggagagagtg gagcgctaca tgcacagacg ctctaaccca accttcgccg gtcacttggg 660 tccaattctg ccaatctgtt acccgatgcc ggacaaagtc atggctgaag ccgtgaccgt 720 cagtagtact gagccaaccg agcccgaatt ggatacgagc caaccaccca gagacaggat 780 accttacccc tcactgatga ggagactgca ccgaccagct tttatcttgc aaccggacta 840 ccccccccat cggtcaggat catggagagt ggctccatct tccaagagat gtttcagcta 900 cgggcatgct cccagtatta ccgaatccag ggtggcagat gcgctggaag agatttttat 960 gagacctatg gctcaatcaa tgctgtacca agtctatgat caggatgcgt ccataggttt 1020 ccatgccgat gacgaggagt gctacgacct ctctgataac cctgtcctca cgataaatac 1080 aaaggggttc gcgaagttca tgtgcagaga tgatagaggt gaggtgtcat tcgatctggt 1140 gcctgggagt tgtttactga tgccaaacga ttaccagaca agagggaagc actcagtcag 1200 gagctgctcg gctggtagga cctcaacgac attcaggatc cagaggcgtg atgtgcccaa 1260 aggcaaagtc agtaagggtc tcactaacga ccaaccggcc ccgaaagagc agctgacaca 1320 gcaggatttc gagaatctgt ctctcgatga tcaggtttca ctctgtatgc catacagctg 1380 cttcttcaag tgtttagcct cggaaaaaga cgatgtgtcg gccatcctgt tacaatgctc 1440 agaatacctc tggtctgtat accagaacag gggcacctca gtcgccactg ctctcaggat 1500 ttgcaaggac atgggttact cagtgcagat attggagggc ctcaagatca ccaaatcaga 1560 cagtgagggg ctactcaaaa tcaagttgga gaacggacat tatgaacttg tgaaagactt 1620 ctccgccttt gatagcctca cccagaacaa gaagaagaag agggagtcca gtggtgccaa 1680 gctcgattta ggttctctca aagtctcaga tggcttctac tctcagatct cattcaaagc 1740 actcaaagtc gccgctgaga aacttgtggt tagcctactg gatggtacat caggcatcat 1800 ctcccagggt gtgcggggcg agggcttcag aatagtcccg ggggccaaat cagagcagac 1860 tgcacttgac ataattagga gagctgagga cacgacaaaa gatatcgtca caatcctcgg 1920 tttcgcagga tcaggcaaga gccacggcct acaacagaga ataaatgctg agggtaagcc 1980 ccaaggaatc ctactgctga gcccccgcag gcaactaatg gaagattggg tgaagaaatg 2040 ccccaaactg agctgcaaaa catttgaggc tggtctcaag gatgatctcc gggcatacgg 2100 ttgcgtagtg ctagatgagc tgtcactctt cccaaatggt tacctcgact tgctgatcat 2160 caaggcgaat ttactgggtc atcaaaagct tcagatagtt gttgttgggg atccaattca 2220 agcaaggtac tacagcaagg atgaccagca caggctctac aaggagcacg aaatcgatag 2280 gcttggggaa gtcaattatg gcctatggac acacaggtta ccatcccgac tggcagataa 2340 actttccgtg gaaacaacca gtgaatgtcc tggaaccgag gtagtggtcc ataactcact 2400 acctgaggcc cgagctgcag ccagaaagaa gaaccaggaa atagaggtaa tcttgtgtgc 2460 ctcccgagag gaaaagaaga gctttgaaga caacactctg acgtttgggg aatcgcaagg 2520 cctcaccttt gatttcggcc tcatttcact gtcagaggag gcccgcttaa gcagtgacca 2580 gcaaatcctg gtggccgtca ccagattcag aaagggcttt ggtttcatct acaatgccaa 2640 aggagactac aaaatttttg ccagaaactg taagggcctc ctcttgagaa tcctcggtaa 2700 accaaaggtg tcaattgatt atctcatgaa catgacaaaa tccaagctca aaataaataa 2760 acttggtggt gtcggggcgg gcctggatga acgggatagg gaactgaggt tggcagggga 2820 tccctggttg aaagggcaaa tcttccttgg gcagagggta aacatggtgt ctgaaacaga 2880 ggctctagtt gaggagcaat tatccaccca caagatccac ctgcccataa gcactgagaa 2940 actcataaca ctcaacatgg gcttttccaa atccaaatac tgcagggaga tcaaaacaag 3000 gtctggtgcc tcaaatcaaa ttctggagga ggataggggg cggggttcca ctgatttacc 3060 gcaaccttgc ctggttgagt cgagatatct gaaccatagc tcaaaggatg atgtcacctt 3120 ctgggctgct gttgttaaaa ggttgaggtt tgcaaagccg gaaaaaaact acagaaaata 3180 cctacttgcg aaacaccggg gtgatgcaat gctgagggcc ttcctagaat tggttccact 3240 aaaaccaatc caatcaaacc tccttctaag tgaggctgaa gctgactttg aagaaaaaaa 3300 actacaaaag agtgctgcaa tggatagcct gccattcaat agatctgacc cagatgcggc 3360 ggcggatctc gtcaaggtcc tttttgaaaa accagccttt gcacaaattt ggaaaaggtt 3420 cgtcttagcg aaggcggggc agaccatagc atgctttcac catcggatac tccttcgctt 3480 tgccccaatg tgcagataca tagaaaaggt ctttagtctc caatgcccca gcaacatcta 3540 cgtgcatcag aaaaagaatt tcgatgtgct tgaggctttt gtgcgtgatc acttctctgg 3600 cgacttgtgc gttgaatcag actatgaggc ctttgacaca tcacaggatg catcaactct 3660 ggccttcgag gtggctctga tggagcacct taagatccct agtcattaca ttgatgacta 3720 tatagtcatg aagactacac tgggctgtaa gatgggatct ctcgctatca tgaggtttac 3780 gggcgagttc tgcactttcc tcttcaatac attcgccaac atatcattca cctccatgcg 3840 ttatgtgatc ccaaggggta cacccctact tttcgctggt gatgatatgt gtgccctgcg 3900 gaacctcaag ctccgaagtg aatacaatga cactcttgat aagctcaccc tcagggccaa 3960 ggtctgcagg acgtctaaac cactcttctg tggttggagg ttaactaagt gggggttata 4020 caaggagcca atcctggtgc ttgaacgcct cttgatatca attgaaaggg gtacattgac 4080 cgacacgata aattcgtact tcctcgagtt caagtatgcc tatgataagg gtggaaacct 4140 ggaggatata atggatgaag gtcagcttga tgcacatcac aggtgcgtta gaatatttct 4200 tcgacatcaa aacctgctgc atgacctcaa ctacagtacc ctccatgagg ggctggattg 4260 atgccccatt aggttcgagc tcgcgagtga acaagatgtc aatatacaaa aagagctcga 4320 aactaggtgg cgactggctc gtgctgagat ctgagataaa tgccgccctt gatttggagt 4380 tgaaagatgg gttgctgtat tccaccatcc ctttcgcccc ccgttccctt ctgactgata 4440 actgcaaata cgggtacata cactggggtc agattttagt tgaggtggtt gcactgcatc 4500 aggccaaaga ccatgactgc ctcctcgtgt tgcatgatga tagatgggag gatccaccag 4560 atagactgat caagtgccaa cgcttcaagc taaagcaggg tccaaactcc ttctccttcc 4620 gtccagattt cctggtatcc ctccttgata caaacgccat ggaatccctc aggttaagca 4680 tatttgtctt gggcttgcgc atgaaacctg gatccaagcc cattgcagtg aagacgacag 4740 ggatatacaa ggcaataaca aacctgactg aggatctctc ttatcggcaa tcaaatatag 4800 agatcaggga ctccgacgaa gatgctgtga acttgcttga gcacttccct ctgcactcct 4860 tcgagataga ggaaagtaca ttcaggagat ggggtctgac aggtccaaag agggtacaca 4920 atgcaaatat caagagagtg gttcaaaaag ggagagggat taggttccga gaggcagacc 4980 tgaaaagtgg tagtacgttt gacgataata gttcatattc gctgggtatt gagagtcaac 5040 catcttcacc acacaatgtc aacggtgcac gaagtcctga ggagtcaagt gaagaaagaa 5100 atattagaga gattgatgaa agaagacgcc ttcaagggag taaaagaaga ggacaggtca 5160 agagtctgga gaaacatatt tgggaatata gccatacttg gatcctcaga ggagacagag 5220 ttcccacccc tagagttgga ggtggaggat ctcaaaggtc agaagatcgc gtcttacact 5280 ctctcagata tcattgagct gataagggat taccgtgaca cccacaagag ccagtcgatc 5340 aagatgatga cactcagaaa tatatgtgag gcatttgccc acgaggctcg actcttcctt 5400 atggaggcca agaagattgg acttgtcaca aacctctgcg ctaaaatgac aaagacgtgt 5460 gggcgcgctc cccaggtggc tttcgatttc tcaactgggc tggctcataa tacactgtct 5520 aattctgaga agtcagtcat ccagaatctc aatgcccgtc tgtatgcaac acaagccgac 5580 cagtcaaaaa acgaggcaat aatagataag gggccagcag caggtcctga ccatctaaat 5640 gtgaatctga aaataactga tctatcagac ctggtagtgt ttaaattggt gtttgtatta 5700 ctaaataaga ctgtagatgg tgtgaaaggt gtgtttaata atttctgcag caactttagc 5760 tcggtcagtg caccaactca gacaccccca aaagagatag aggcggatag caaacttgag 5820 aaactcattg agcactcact ggagagggcg gctaagcttg acctaggctc attatcaaaa 5880 atcaagcctt tcccactccc gagagactgc gaggatatcc ttggcgactg cggacttgct 5940 agggggcgaa gtgggttgat tcagtattat aagggtaaat cttttgtgga ggccccaaga 6000 ggttattcaa ccagactcat tttccccgcc ctggtcaact atagaatgag caattcctcc 6060 gaactcttag gtgtgctgct agctctgaat agatatgagg gtgatgggag gattgagaaa 6120 gtaactgaca tagagctgtc cgccgtaata aacagatacc tggatcccta caggagtaag 6180 agtgtaactg tcagggactt tgatatactc gccaatgccg ctcccgggtg ggttgacaaa 6240 gagagtattg ttgggaatcc tacatacgct tggtttccta gggcaagata atttgagaaa 6300 catattttcc aggttggagg tgggtgttta tgaggggaaa tcatcctatg cgagaaaaag 6360 acgagctaag ttgctaggtg tgtgtcataa gtgttttaaa gttaataact gttgtgtgag 6420 atgtagtgaa acagccaagc tcaaaaggga gtggaagaaa gattgggtac tcaatggttt 6480 gcgtaaggga actgatgcga tccctgaacc aaggcttatt cacctccttg agggattggg 6540 tataaataca aataattaga tgtttaaagt taaataaatg gtcttggcaa cctaaaacca 6600 gacgtgacct ggaggcaacc 6620 //