ID FN256356; SV 1; linear; genomic RNA; STD; VRL; 4152 BP. XX AC FN256356; XX DT 10-JAN-2012 (Rel. 111, Created) DT 28-AUG-2015 (Rel. 125, Last updated, Version 2) XX DE Tobacco bushy top virus complete genome, isolate YWSh XX KW complete genome. XX OS Tobacco bushy top virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-4152 RA Li F.; RT ; RL Submitted (12-MAR-2009) to the INSDC. RL Li F., Plant Protection, Yunnan Agriculture University, 650201, CHINA. XX RN [2] RA Li F., Yin, C X., Chen H.R.; RT "Complete nucleotide sequence and genome organization of a Yunnan isolate RT of Tobacco bushy top virus"; RL Unpublished. XX DR MD5; ba46f862a0b8be676adb1440eff0ba75. DR EuropePMC; PMC4514990; 26209518. XX FH Key Location/Qualifiers FH FT source 1..4152 FT /organism="Tobacco bushy top virus" FT /host="Nicotiana tabacum" FT /isolate="YWSh" FT /mol_type="genomic RNA" FT /country="China:Yunnan, Dali, Weishan" FT /db_xref="taxon:184020" FT CDS join(11..952,952..2607) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF1-ORF2" FT /db_xref="GOA:H1ZQW2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:H1ZQW2" FT /protein_id="CAX62133.2" FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAVKCPPEDPIPATPQGSQPV FT PLVKSSERSSQDAEREALDEIWGLPTPEPHPLPKYFERRYQALARTCQKDYSNWQIVPY FT TGGPRVLREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRLTKVAGEVKSRLSVPPRE FT PSPTCIGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFLLGDVVARRGVETKVKTKIHPKIRVL FT RAARPRPVERVSYQIDVVRPCADFGVHNNSLNNLVRGVNERVFYTDHKRKEPRRPSAGS FT FDKIDISEIKAFRVQPWTLEEVVESYTGSQRVRYGQAVESLAVTPLSRNDARVKTFVKA FT EKINFTAKPDPAPRVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVE FT TGEIVAKKWKCFSDPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGREVNKLLSWMYK FT NHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMNNGDDC FT IVIFDRQYLSTFQDAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHI FT SSIAKDCCSVIDWEQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGA FT WKNEGLAWYRMGMDLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKR FT ARVCKPGEMVLVDSLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC" FT CDS 11..958 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:H1ZQW1" FT /protein_id="CAX62132.1" FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAVKCPPEDPIPATPQGSQPV FT PLVKSSERSSQDAEREALDEIWGLPTPEPHPLPKYFERRYQALARTCQKDYSNWQIVPY FT TGGPRVLREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRLTKVAGEVKSRLSVPPRE FT PSPTCIGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFC" FT CDS 2757..3470 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:H1ZQW3" FT /protein_id="CAX62134.1" FT /translation="MSTIINVNTHPQGRYERGAAQRSIRGSDVKGARGIKPRRANPPPG FT RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREDCGGVHAPHPGRCWRGGRNL FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL FT RRRREPVQPVHNVGAEDRVRSAQLSDEAPQSDADLQTSGEGQSVLPNPNSGGTEKCNVE FT SVCNNCDRAPTTNKW" FT CDS 2773..3507 FT /product="hypothetical protein" FT /note="ORF4" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:C9WX99" FT /protein_id="CAX62135.1" FT /translation="MSTLIHKADTKEELLNALYGEVTLRELEESNLGVLTPHRAENKVV FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKIVVVFTPHIPDDAGGEVEIWVHDNM FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT FT ATGLPPPTSGEQDMEVVSHPPG" XX SQ Sequence 4152 BP; 1000 A; 1083 C; 1204 G; 865 T; 0 other; aggttacgat atggagttca tcaacaagat aaagcaattg ttggcaatga atttcaagcc 60 ctcaaagggc gtaatgtctc gggaggagct ccgtgaagct ttcgatccca cttgggagct 120 cctcatcaca caggctcgtg tcaccactga ggtgtcacgc cagtgtgagg attggtacac 180 tctagctgta cccaccacct accgcttgcc agagttggcg gtagaagagg ctgtgcgtga 240 aaagaacata gcgcgagagg tggcggtcaa gtgcccccct gaggacccga ttcctgcaac 300 cccgcagggg tcacagcctg tccccttggt gaagagctct gaacgctcta gccaggatgc 360 cgagcgtgag gcgctcgatg agatatgggg gctccccact cccgagccac atcctctgcc 420 caagtacttc gagcggcgtt accaggcgct ggctcggacc tgccagaagg actactccaa 480 ctggcagatt gtaccctaca cgggtgggcc acgcgtgctg agagaggagg acgtgctacc 540 aatggccacg ggggttatac ccttgccacc acccccccct aaggcttctg taattggagc 600 agtcttgggg ctgattaccc gcctcaccaa ggtggcgggg gaggtgaaga gcaggctgag 660 cgtaccgccg cgggagccct cgcccacttg cattggctta gagcaggtgg ctggtgagcc 720 catgggctac atgaatgcac actctgtagc catggagttg cgggctaggt acggagttca 780 gcccgccaca gctgcgaact tgcagcttgg aaaccgggtg gccagggaaa tcctggaaaa 840 acagtgcggg gccacccgcg acatggtgtt catactcggg cacctcgcca ccaccttgtg 900 gttcaccccc actatggtgg acttggccct tcaatgtggg cccaaggatt tttgctaggg 960 gatgtggtcg ctcggagggg tgtagaaact aaagtgaaga cgaaaatcca ccccaaaatc 1020 cgagtgctta gggcggcccg tccccggccc gtagaaagag tgtcgtacca aatcgacgtg 1080 gtgcggccct gtgctgactt tggagtccac aacaactccc tcaacaattt agtgcgaggg 1140 gttaacgagc gggtgttcta cacagaccac aagaggaaag agccccgcag accttcagct 1200 ggtagttttg acaagatcga catcagcgag ataaaagcgt tcagagtcca gccgtggact 1260 ctcgaggagg tcgttgagag ctacacgggt agccagaggg tgcggtatgg acaagctgtt 1320 gaatccttag cagtaacgcc cctctcacga aacgacgccc gggtcaaaac atttgtaaag 1380 gcggaaaaga taaacttcac cgccaagccc gacccggctc ctcgcgttat ccagccgcgg 1440 gatccaaggt tcaatgcctg ctttgccaaa tacacaaagc ccttggaacc cctcctatac 1500 aagcagctgg gtaagcttta ccagttccca tgcatcgcaa aaggctttaa cgccgtagag 1560 accggagaga tagtagccaa gaagtggaag tgcttcagtg accctgtctg tgtgggttta 1620 gatgcctccc ggtttgacca gcatgtgtca tgcgatgcac tacggttcac ccatagcgtg 1680 tacaaacggt tcgtgaaggg cagggaagtg aacaagttgc tttcctggat gtacaaaaac 1740 cacgctctgg gaagtgcgaa ggacggattc gtcaagtacg aggtggaagg ctgtcggatg 1800 agtggggata tggatacagc cctagggaat tgtgtcctga tggtcctcat gactaggcag 1860 ctatgcaaga acctctccat accgcacgaa ctgatgaaca acggcgacga ctgcatagtt 1920 atatttgaca ggcagtacct gtccaccttt caggatgcag ttgagccttg gtttagggaa 1980 ctagggttta caatgaaggt cgaggagcca gtctaccatc tcgaaagagt agacttttgc 2040 cagacccgcc ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata 2100 gcgaaggatt gctgttcagt tattgactgg gaacagttac cggcttggtg gaacgccatt 2160 ggagaatgtg gcattgccgt ggctggtggt atacccatac acaacagctt cttgagatgg 2220 ctcctgagat caggtgagag caaccctgat ctcctgaagc atggcgcatg gaaaaatgag 2280 ggcctagcgt ggtaccggat gggcatggac ctatcccatg agagacacgt tagtgatgaa 2340 gcgcgcgcca gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag 2400 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag agtgtgtaaa 2460 cctggtgaaa tggtattggt tgattcactc ccaccgcggc actttaatga ttacttccag 2520 gatgttggaa taggggggag tagcagtgat tacgttgtcc cggggaccca cgagttcgaa 2580 ccggggacgt tgtggacaca atgctagtcg attgagttag ccaggcatat ggttgcaagc 2640 gctggggact tagtccataa agccactggt aaagagcctc cagtaggcag gcccgccttg 2700 atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg gtttcaatgt 2760 ctacgatcat aaatgtcaac actcatccac aaggcagata cgaaagagga gctgctcaac 2820 gctctatacg gggaagtgac gttaagggag ctcgaggaat caaacctcgg cgtgctaacc 2880 ccccaccggg ccgaaaacaa ggtggtaatg accccactgc tgccacccag aagtcaagga 2940 agaatcgcca gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc 3000 atagagaaga ttgtggtggt gttcacgccc cacatcccgg acgatgctgg cggggaggta 3060 gaaatctggg tccacgacaa catgctacca cacctaaaca gcgttgggcc ccgcgtaaga 3120 tttccgatga gcggagggcc caggttgata gcattttatc ccccctactc gataccctta 3180 agttgtcaag tgaggggggc gccccggagc tacttcattg tatcggagta ctccggcgtg 3240 aacttcgtcg caggcgcgag cccgttcagc ctgtacataa tgtgggagcc gaagatagag 3300 tgcgtagcgc acaactatct gatgaggccc cccaaagcga tgccgatttg cagacatctg 3360 gtgaaggaca gtctgtcctc cctaacccta actcaggggg cactgaaaag tgcaatgtcg 3420 aatcggtatg caacaactgc gaccgggctc ccaccaccaa caagtggtga gcaggatatg 3480 gaggtagtgt cccatcctcc aggctaaatt ggacacaaaa cggagctaga tttagtgttg 3540 caattgctag accgttagcc actacgctag acagtgcgac aactgaggtc gtctatgacc 3600 cacagggtgc catcctgtgc aatttccaac ccttggcaag ggtgatccta gaggacgcgg 3660 gcattgactt gcctggggat gcttctagtt acataccgga gtggttgata gacctctgtg 3720 taaggaaaca ggtgtgagac cggatcctgg gaaacaggct gggatggtcc cgtaagttcg 3780 ggcggtgccc ttctggggta accccaccgc cgacgtatca cctcacacgc tgttgaccga 3840 taagccgagg tattggaacc gcaccactct ggaggttccc tctccttatg aggtggaggt 3900 acagcacgcc ttaagtgtct gcgatccggt gttcacgtgc cggtggtccc cctagttaac 3960 gtggtgccac agtctgtggt aggggcagct ggtcggattc cagcagaaac caagtagcaa 4020 gtggacgttg ctacctcgag cctagagtca tgggcccgca tcgacgtttg cggtaactca 4080 cagcgggcga taatagctgt tgagaatgtc ggttcctgac ttagcgggag atgagcactt 4140 tctctcgcgc cc 4152 //