ID   FN179278; SV 1; linear; genomic DNA; STD; VRL; 1363 BP.
XX
AC   FN179278;
XX
DT   19-APR-2009 (Rel. 100, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE   Tomato leaf curl New Delhi virus partial segment DNA A, isolated from
DE   Capsicum annuum in Pakistan
XX
KW   .
XX
OS   Tomato leaf curl New Delhi virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1363
RA   Akhter A.;
RT   ;
RL   Submitted (19-FEB-2009) to the INSDC.
RL   Akhter A., Plant Biotechnology, NIBGE, Jhang Road, Faisalabad, 38000,
RL   PAKISTAN.
XX
RN   [2]
RX   DOI; 10.1094/PDIS-93-9-0962B.
RX   AGRICOLA; IND44295003.
RA   Akhter A., Qazi J., Saeed M., Mansoor S.;
RT   "A Severe Leaf Curl Disease on Chilies in Pakistan is Associated with
RT   Multiple Begomovirus Components";
RL   Plant Dis. 93(9):962-962(2009).
XX
DR   MD5; 783e0e7a1bf775717fb02d9d944eae67.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1363
FT                   /organism="Tomato leaf curl New Delhi virus"
FT                   /segment="DNA A"
FT                   /host="Capsicum annuum"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan"
FT                   /isolation_source="host leaf"
FT                   /db_xref="taxon:223347"
FT   CDS             complement(<1..165)
FT                   /gene="AC1"
FT                   /product="replicase associated protein AC1"
FT                   /db_xref="GOA:C1L379"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="UniProtKB/TrEMBL:C1L379"
FT                   /inference="similar to DNA sequence:INSD:EF620534.1"
FT                   /protein_id="CAX51840.1"
FT                   /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQNLETPTAKKFIK
FT                   ICRELHEDGS"
FT   CDS             361..747
FT                   /gene="AV3"
FT                   /product="AV3"
FT                   /db_xref="UniProtKB/TrEMBL:C1L380"
FT                   /protein_id="CAX51841.1"
FT                   /translation="MKFELHCLFSAGGPINRLAHQVWIHKHVGSITARISRKRSWSEVH
FT                   ASCKISPRDRKELFPRHSRIRSCQRSHSCSPSKELWRSDQQISSFQLPHRKYADVELRP
FT                   AHTRAVLLPPLSASQKQRPGPTGR"
FT   CDS             440..778
FT                   /gene="AV2"
FT                   /product="AV2"
FT                   /db_xref="GOA:C1L381"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:C1L381"
FT                   /protein_id="CAX51842.1"
FT                   /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT                   ILVLRAKNYGEATSRYHHFNSRIESTPTSNFDQPIRVPCCCPHCPRHKSKGLDQQADEQ
FT                   KTQNVQNV"
FT   CDS             600..>1363
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:C1L382"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:C1L382"
FT                   /protein_id="CAX51843.1"
FT                   /translation="MAKRPADIIISTPASKVRRRRTSTSPYACRAAAPIVRVTKAKAWT
FT                   NRPMNRKPRMYRMYRSADVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT                   STATVKNMHRDRYQVLRKWHSTVTGGTYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHPSNPVYATLKIRIYFYDSVT"
FT   CDS             complement(630..1115)
FT                   /gene="AC5"
FT                   /product="AC5"
FT                   /db_xref="InterPro:IPR006892"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="UniProtKB/TrEMBL:C1L383"
FT                   /protein_id="CAX51844.1"
FT                   /translation="MHVLHRSCARFIVKHIKNFPKILRGSCRTTVTNQKKHNTVSMVFS
FT                   LDVFIHPYLSQHIDRFHTKSLAYAMCESGSSRNITNTHDFADMRDIVPGFKGLHLTRAF
FT                   TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDADNGGSSTARVWAGRSSTSAYFRCGS"
XX
SQ   Sequence 1363 BP; 393 A; 281 C; 311 G; 378 T; 0 other;
     agacccatcc tcgtgaagct ctctacagat tttaatgaat ttcttcgcag ttggggtttc        60
     taggttttgc aattgggaaa gtgcctcttc tttagtgaga gagcacttag gatatgtaag       120
     gaaatagttt ttggcatcta ttctaaaacg acgtggagga gccatcaaac ttgtcgtttt       180
     gattcggcgt ccctcaactt cctctatgta attggcgtct ggcgtcccat atataggtag       240
     gacgctaaat ggcagaattg taattttggt actaaaatta ctttaattca aaatcctcat       300
     agcggccatt cgttaatatt accgaatggc cgcgcaaatt tttaggtggg ccctcaacca       360
     atgaaattcg agctacattg cttatttagt gctgggggac caataaatag acttgctcac       420
     caagtttgga tccacaaaca tgtgggatcc attactgcac gaatttccag aaagcgttca       480
     tggtctgagg tgcatgctag ctgtaaaata tctccaagag atagaaaaga actattcccc       540
     agacacagtc ggatacgatc ttgtcagaga tctcattctt gttctccgag caaagaacta       600
     tggcgaagcg accagcagat atcatcattt caactcccgc atcgaaagta cgccgacgtc       660
     gaacttcgac cagcccatac gcgtgccgtg ctgctgcccc cattgtccgc gtcacaaaag       720
     caaaggcctg gaccaacagg ccgatgaaca gaaaacccag aatgtacaga atgtatagaa       780
     gtgccgacgt gccaaggggc tgtgaaggcc cttgtaaggt gcagtccttt gaatccaggc       840
     acgatgtctc tcatatcggc aaagtcatgt gtgttagtga tgttacgcga ggaaccggac       900
     tcacacatcg cgtaggcaag cgattttgtg tgaaatctgt ctatgtgctg ggaaagatat       960
     ggatggatga aaacatcaag actaaaaacc atactaacag tgttatgttt tttttggttc      1020
     gtgaccgtcg tcctacagga tcccctcaag attttgggga agtttttaat atgtttgaca      1080
     atgaaccgag cacagctacg gtgaagaaca tgcatcgtga tcgatatcaa gttttacgga      1140
     agtggcactc gactgtgacg ggaggaacat atgcgtcgaa ggaacaagca ttagttaaaa      1200
     agtttgttag ggttaataat tatgttgttt ataatcaaca agaggccggc aagtatgaga      1260
     atcatactga aaatgcatta atgttgtata tggcctgtac tcatccatca aatcctgtat      1320
     atgctacttt gaaaatccgg atctattttt atgattcggt aac                        1363
//